Wall clock time and date at job start Tue Mar 31 2020 11:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.09004 * 115.55807 * 34.41932 * 14 12 11 16 16 C 1.53144 * 117.51862 * 248.66958 * 14 12 11 17 17 C 1.52331 * 117.51791 * 180.16684 * 14 12 11 18 18 C 1.53289 * 128.80213 * 349.56231 * 17 14 12 19 19 N 1.48102 * 85.92325 * 196.85498 * 18 17 14 20 20 C 1.46896 * 110.99994 * 137.12449 * 19 18 17 21 21 C 1.50703 * 109.47150 * 70.41589 * 20 19 18 22 22 C 1.41381 * 126.57817 * 269.71751 * 21 20 19 23 23 C 1.34518 * 106.84021 * 179.83018 * 22 21 20 24 24 O 1.34305 * 108.41652 * 0.43028 * 23 22 21 25 25 C 1.34302 * 109.47936 * 359.71873 * 24 23 22 26 26 C 1.48108 * 90.95709 * 24.14931 * 19 18 17 27 27 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 28 28 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 29 29 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 30 30 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 31 31 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 32 32 H 1.09002 * 117.51864 * 359.97438 * 16 14 12 33 33 H 1.09001 * 117.51700 * 145.12286 * 16 14 12 34 34 H 1.08990 * 113.80449 * 311.10752 * 18 17 14 35 35 H 1.09000 * 113.79792 * 82.61056 * 18 17 14 36 36 H 1.09001 * 109.47508 * 190.41398 * 20 19 18 37 37 H 1.08998 * 109.47283 * 310.41484 * 20 19 18 38 38 H 1.07998 * 126.58315 * 359.97438 * 22 21 20 39 39 H 1.07999 * 125.78870 * 180.10765 * 23 22 21 40 40 H 1.08001 * 125.78966 * 180.02562 * 25 24 23 41 41 H 1.08996 * 113.80255 * 221.59549 * 26 19 18 42 42 H 1.09000 * 113.90247 * 90.11559 * 26 19 18 43 43 H 1.08998 * 113.77108 * 221.06070 * 27 11 10 44 44 H 1.08991 * 113.87349 * 89.66683 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9614 -5.0373 2.4603 16 6 0.3246 -6.3400 3.7738 17 6 -0.4891 -7.2037 2.8163 18 6 -0.0830 -8.5039 2.1133 19 7 -1.1670 -9.1413 2.8957 20 6 -1.9417 -10.0703 2.0621 21 6 -1.1004 -11.2790 1.7421 22 6 -0.2480 -11.4406 0.6258 23 6 0.3088 -12.6604 0.7340 24 8 -0.1659 -13.2464 1.8453 25 6 -1.0209 -12.4133 2.4607 26 6 -1.8655 -7.8425 3.0328 27 6 2.1616 -3.7405 0.0012 28 1 -0.4850 -0.8401 -0.0004 29 1 0.4618 -2.5341 -0.7504 30 1 1.3949 -2.5362 2.2115 31 1 -0.2743 -2.8598 1.5671 32 1 1.3865 -6.5641 3.8758 33 1 -0.1711 -5.9868 4.6781 34 1 -0.2620 -8.4972 1.0382 35 1 0.9147 -8.8540 2.3780 36 1 -2.8362 -10.3826 2.6010 37 1 -2.2305 -9.5731 1.1361 38 1 -0.0750 -10.7218 -0.1614 39 1 1.0135 -13.0966 0.0416 40 1 -1.5538 -12.6190 3.3772 41 1 -2.2800 -7.6686 4.0258 42 1 -2.5767 -7.6369 2.2327 43 1 2.1766 -4.2747 -0.9488 44 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277182112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:37 Heat of formation + Delta-G solvation = 61.961295 kcal Electronic energy + Delta-G solvation = -25551.973120 eV Core-core repulsion = 21859.625811 eV Total energy + Delta-G solvation = -3692.347309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.48575 -41.74433 -40.66060 -38.77564 -36.37394 -34.85933 -34.21765 -31.20736 -30.75244 -28.61788 -27.26532 -27.11290 -26.83632 -24.58067 -24.07968 -22.54002 -22.19228 -21.12212 -20.13249 -19.34957 -19.02871 -18.44611 -18.10681 -17.25283 -16.79335 -16.63377 -16.55588 -16.22757 -15.74850 -15.65313 -15.52399 -15.04452 -14.61360 -14.44550 -14.16966 -13.79503 -13.66843 -13.51617 -13.38796 -13.33743 -13.22375 -12.81838 -12.75396 -12.45740 -12.33475 -11.90814 -11.74004 -11.54064 -11.46392 -11.25386 -11.03140 -10.69177 -10.56343 -10.45174 -9.85553 -9.62994 -9.46116 -8.61793 -6.35263 0.84956 1.41735 1.57952 1.61199 1.66580 1.82700 1.86183 2.27519 2.58089 2.62100 3.05688 3.14294 3.17008 3.46367 3.64611 3.75843 3.84193 3.93066 4.06815 4.10515 4.23190 4.27005 4.29939 4.41517 4.43941 4.48291 4.50796 4.57683 4.62634 4.67991 4.71691 4.74012 4.75047 4.79669 4.90567 4.95836 5.03257 5.03445 5.23119 5.32358 5.37767 5.52365 5.97230 5.99860 6.17586 6.18621 6.57864 6.79456 7.10068 7.44327 8.78746 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.002320 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.723943 B =12066.692549 C =12519.838406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.113 2.887 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.604 4.604 8 H 0.055 0.945 9 C 0.001 3.999 10 C 0.115 3.885 11 N -0.638 5.638 12 C 0.548 3.452 13 O -0.588 6.588 14 C -0.181 4.181 15 H 0.135 0.865 16 C -0.095 4.095 17 C -0.139 4.139 18 C 0.072 3.928 19 N -0.474 5.474 20 C 0.091 3.909 21 C -0.196 4.196 22 C -0.231 4.231 23 C -0.042 4.042 24 O -0.189 6.189 25 C -0.024 4.024 26 C 0.054 3.946 27 C 0.115 3.885 28 H 0.261 0.739 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.137 0.863 39 H 0.230 0.770 40 H 0.230 0.770 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -19.845 8.123 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.221 4.221 3 Si 0.935 3.065 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.007 4.007 11 N -0.371 5.371 12 C 0.340 3.660 13 O -0.470 6.470 14 C -0.203 4.203 15 H 0.152 0.848 16 C -0.132 4.132 17 C -0.140 4.140 18 C -0.057 4.057 19 N -0.197 5.197 20 C -0.037 4.037 21 C -0.197 4.197 22 C -0.251 4.251 23 C -0.109 4.109 24 O -0.084 6.084 25 C -0.092 4.092 26 C -0.074 4.074 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.061 0.939 38 H 0.155 0.845 39 H 0.246 0.754 40 H 0.247 0.753 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.637 -19.603 8.571 21.891 hybrid contribution 0.100 -0.878 -1.470 1.715 sum -4.537 -20.480 7.101 22.146 Atomic orbital electron populations 1.70926 1.07777 1.30283 1.47552 1.27148 0.96517 1.06088 0.92301 0.82960 0.74146 0.71535 0.77861 1.20024 1.19393 1.21275 1.22104 0.94446 0.91791 1.55873 0.92682 1.20594 0.94873 0.93244 0.93120 1.23549 0.99528 0.77382 1.00251 1.50325 1.41882 1.04976 1.39912 1.19986 0.82665 0.80766 0.82600 1.90606 1.57672 1.40915 1.57841 1.22093 1.01080 0.99636 0.97448 0.84764 1.22876 1.00226 0.98130 0.91968 1.22785 0.99294 0.89129 1.02833 1.23033 0.96620 0.90356 0.95658 1.68671 1.07076 1.07622 1.36309 1.20965 0.95612 0.90716 0.96368 1.20436 1.04047 0.97696 0.97562 1.21946 1.02465 0.99092 1.01555 1.24529 1.02480 0.93996 0.89896 1.84075 1.48539 1.42792 1.33011 1.24384 0.95834 0.89098 0.99856 1.23616 0.92593 0.87118 1.04056 1.23214 0.94419 0.91965 0.91090 0.92936 0.95092 0.90052 0.91299 0.89103 0.84178 0.92517 0.91620 0.87572 0.93855 0.84474 0.75374 0.75340 0.86365 0.89956 0.92177 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.14 13.65 21.45 0.29 -51.85 16 2 C -0.02 -1.09 5.46 84.66 0.46 -0.62 16 3 Si 1.11 46.39 29.90 68.60 2.05 48.44 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.60 -30.99 8.77 25.60 0.22 -30.77 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.00 0.05 3.09 -10.88 -0.03 0.01 16 10 C 0.12 4.70 8.12 86.48 0.70 5.40 16 11 N -0.64 -25.63 3.61 -836.80 -3.02 -28.65 16 12 C 0.55 21.02 7.84 87.66 0.69 21.71 16 13 O -0.59 -25.70 15.86 -3.03 -0.05 -25.75 16 14 C -0.18 -5.22 5.94 -11.71 -0.07 -5.29 16 15 H 0.13 3.51 8.14 -2.38 -0.02 3.49 16 16 C -0.09 -2.22 10.24 30.47 0.31 -1.91 16 17 C -0.14 -3.48 3.04 -52.35 -0.16 -3.64 16 18 C 0.07 2.01 5.68 86.17 0.49 2.50 16 19 N -0.47 -10.48 6.25 -922.93 -5.77 -16.25 16 20 C 0.09 1.77 5.34 85.56 0.46 2.23 16 21 C -0.20 -4.14 5.26 -19.94 -0.10 -4.25 16 22 C -0.23 -5.15 10.60 22.19 0.24 -4.91 16 23 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 24 O -0.19 -3.76 10.65 -2.50 -0.03 -3.78 16 25 C -0.02 -0.43 12.01 66.97 0.80 0.38 16 26 C 0.05 1.03 7.99 86.16 0.69 1.71 16 27 C 0.12 4.88 8.39 86.48 0.73 5.60 16 28 H 0.26 14.58 7.04 -92.70 -0.65 13.93 16 29 H 0.03 1.58 7.61 -2.39 -0.02 1.56 16 30 H 0.08 3.28 8.09 -2.39 -0.02 3.27 16 31 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 1.80 7.66 -2.39 -0.02 1.78 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 0.90 7.71 -2.39 -0.02 0.88 16 38 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.23 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.47 7.80 -2.39 -0.02 1.45 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 Total: -1.00 -66.15 372.23 0.82 -65.33 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.11 Total: 24.32 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 6.23 Total: -11.82 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -8.49 Total: -96.74 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.07 Total: -29.53 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.05 Total: 48.44 kcal Total: -66.15 0.82 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277182112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.290 kcal (2) G-P(sol) polarization free energy of solvation -66.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds