Wall clock time and date at job start Tue Mar 31 2020 11:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46971 * 299.99776 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99521 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 C 1.34505 * 125.78931 * 89.71722 * 19 18 17 21 21 C 1.41387 * 106.84103 * 179.89262 * 20 19 18 22 22 C 1.34513 * 106.83741 * 0.36401 * 21 20 19 23 23 O 1.34296 * 108.42150 * 359.78110 * 22 21 20 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.07997 * 126.58041 * 0.02562 * 20 19 18 37 37 H 1.08004 * 126.57916 * 180.16822 * 21 20 19 38 38 H 1.08001 * 125.78389 * 179.74866 * 22 21 20 39 39 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 40 40 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 41 41 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 42 42 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 43 43 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 44 44 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1614 -3.7405 0.0005 11 7 1.2205 -4.3066 -0.9855 12 6 0.8822 -5.5566 -1.3586 13 8 1.4092 -6.5115 -0.8281 14 6 -0.1511 -5.7681 -2.4351 15 6 -1.6346 -5.3237 -2.4657 16 6 -1.4825 -6.0579 -3.8470 17 7 -2.4874 -6.2858 -4.8940 18 6 -2.9927 -5.0127 -5.4248 19 6 -4.0185 -5.2862 -6.4944 20 6 -5.3410 -5.4322 -6.2971 21 6 -5.9203 -5.6710 -7.5645 22 6 -4.9161 -5.6647 -8.4594 23 8 -3.7665 -5.4313 -7.8056 24 6 -0.6905 -7.0923 -3.0181 25 6 -0.1340 -5.2986 -3.9110 26 6 0.7991 -2.9540 -1.3990 27 1 -0.4850 0.8401 -0.0004 28 1 0.4602 -2.5346 0.7498 29 1 3.1580 -3.5544 -0.3997 30 1 2.1761 -4.2746 0.9506 31 1 -2.2818 -5.8304 -1.7498 32 1 -1.7912 -4.2461 -2.5160 33 1 -3.2428 -6.8600 -4.5512 34 1 -3.4513 -4.4396 -4.6190 35 1 -2.1667 -4.4434 -5.8511 36 1 -5.8608 -5.3755 -5.3522 37 1 -6.9678 -5.8312 -7.7735 38 1 -5.0172 -5.8215 -9.5232 39 1 0.0364 -7.6750 -3.5839 40 1 -1.2905 -7.6869 -2.3293 41 1 -0.1970 -4.2195 -4.0514 42 1 0.6143 -5.7819 -4.5391 43 1 -0.2738 -2.8602 -1.5663 44 1 1.3956 -2.5369 -2.2104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277399054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:21 Heat of formation + Delta-G solvation = 116.602397 kcal Electronic energy + Delta-G solvation = -25611.957441 eV Core-core repulsion = 21921.979548 eV Total energy + Delta-G solvation = -3689.977893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.77208 -41.96408 -38.98090 -36.82531 -35.35524 -33.12278 -32.70406 -30.12323 -29.29517 -26.26332 -25.80505 -25.58623 -25.26214 -25.07468 -23.26374 -21.97613 -20.68164 -20.17920 -18.74948 -17.86810 -17.69196 -16.90935 -16.51102 -16.23994 -15.74852 -15.39617 -14.79776 -14.54217 -14.47697 -14.27120 -14.18483 -13.85264 -13.58331 -13.23315 -13.06320 -12.89889 -12.39683 -12.18363 -11.77366 -11.65220 -11.52661 -11.38354 -11.20134 -11.17120 -11.00098 -10.81348 -10.46627 -10.38794 -10.22271 -10.16242 -9.68069 -9.32848 -9.06424 -8.84954 -8.64309 -8.60525 -7.89570 -6.22036 -4.27374 1.44693 2.34278 2.73674 2.94207 3.20166 3.29247 3.32110 3.38174 3.73579 4.14579 4.18914 4.30264 4.39408 4.46514 4.61156 4.70181 4.77211 4.81026 4.98599 5.06721 5.09612 5.23509 5.55388 5.56000 5.60401 5.65967 5.72356 5.84352 5.85661 5.89698 5.95645 6.00629 6.07727 6.17300 6.23308 6.25888 6.35796 6.54317 6.62712 6.67840 6.78325 6.87545 7.00804 7.51556 7.75791 8.12982 8.45349 8.73828 8.76622 9.39712 10.87580 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002918 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.818390 B = 9592.123078 C =11275.475115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.104 3.896 11 N -0.632 5.632 12 C 0.586 3.414 13 O -0.559 6.559 14 C -0.142 4.142 15 C -0.135 4.135 16 C 0.044 3.956 17 N -0.621 5.621 18 C 0.137 3.863 19 C -0.004 4.004 20 C -0.206 4.206 21 C -0.216 4.216 22 C -0.039 4.039 23 O -0.168 6.168 24 C -0.077 4.077 25 C -0.087 4.087 26 C 0.106 3.894 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.353 0.647 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.202 0.798 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 -9.423 -13.398 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.018 4.018 11 N -0.364 5.364 12 C 0.374 3.626 13 O -0.440 6.440 14 C -0.146 4.146 15 C -0.176 4.176 16 C -0.049 4.049 17 N -0.250 5.250 18 C 0.009 3.991 19 C -0.055 4.055 20 C -0.226 4.226 21 C -0.235 4.235 22 C -0.107 4.107 23 O -0.063 6.063 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.016 4.016 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.219 0.781 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.616 -10.055 -13.835 19.621 hybrid contribution -0.590 1.202 0.570 1.456 sum -10.206 -8.852 -13.265 18.934 Atomic orbital electron populations 1.69955 1.06043 1.27000 1.49323 1.25022 0.94872 0.99386 0.94287 0.86495 0.80235 0.83350 0.77716 1.19561 1.20903 1.20879 1.21009 0.93103 0.89639 1.51877 0.91792 1.20510 0.94360 0.91351 0.92346 1.23539 0.94364 0.93441 0.90444 1.50340 1.41770 1.04546 1.39788 1.18126 0.81382 0.81958 0.81162 1.90643 1.56095 1.40729 1.56483 1.23338 0.96045 0.99602 0.95631 1.25174 0.93773 1.01233 0.97437 1.24332 0.93383 0.97843 0.89315 1.59853 1.16657 1.15352 1.33135 1.20282 0.95327 0.91541 0.91990 1.22222 0.95052 1.05570 0.82632 1.21655 0.93470 1.08038 0.99432 1.21828 1.00522 1.08401 0.92799 1.24064 0.82716 1.05320 0.98621 1.84051 1.34310 1.68850 1.19084 1.23773 0.97183 0.94500 0.96061 1.24095 0.95134 1.00295 0.93045 1.23730 0.99247 0.76623 1.02027 0.92715 0.91711 0.90654 0.91945 0.90636 0.89939 0.82711 0.91037 0.88624 0.83495 0.83488 0.78148 0.90128 0.90499 0.89952 0.90248 0.91923 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.53 13.27 55.43 0.74 -22.79 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.91 8.77 -34.44 -0.30 -13.21 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.77 3.62 -90.85 -0.33 0.44 16 10 C 0.10 2.13 8.39 -2.97 -0.02 2.11 16 11 N -0.63 -12.75 3.61 -178.43 -0.64 -13.39 16 12 C 0.59 11.62 8.17 -10.99 -0.09 11.54 16 13 O -0.56 -12.76 17.82 5.56 0.10 -12.66 16 14 C -0.14 -2.22 3.11 -172.27 -0.54 -2.75 16 15 C -0.14 -1.79 7.95 -24.71 -0.20 -1.99 16 16 C 0.04 0.52 3.89 -146.94 -0.57 -0.06 16 17 N -0.62 -6.45 6.84 -117.64 -0.81 -7.26 16 18 C 0.14 1.35 6.22 -4.98 -0.03 1.32 16 19 C 0.00 -0.04 6.83 -35.63 -0.24 -0.28 16 20 C -0.21 -1.94 10.81 -39.70 -0.43 -2.36 16 21 C -0.22 -1.84 10.91 -39.70 -0.43 -2.27 16 22 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 23 O -0.17 -1.85 10.65 5.73 0.06 -1.79 16 24 C -0.08 -1.01 7.78 -26.71 -0.21 -1.22 16 25 C -0.09 -1.16 7.84 -25.99 -0.20 -1.36 16 26 C 0.11 2.16 8.17 -2.98 -0.02 2.14 16 27 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 1.62 8.13 -51.93 -0.42 1.20 16 29 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 32 H 0.08 1.12 7.45 -51.93 -0.39 0.73 16 33 H 0.35 3.21 8.81 -39.30 -0.35 2.86 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.20 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.08 1.05 7.94 -51.93 -0.41 0.64 16 40 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 41 H 0.08 1.08 7.97 -51.92 -0.41 0.67 16 42 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 43 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 44 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -29.57 375.62 -9.81 -39.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.53 Total: 4.43 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.36 Total: -6.32 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.71 Total: -43.44 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.16 Total: -14.45 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.57 -9.81 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277399054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.985 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds