Wall clock time and date at job start Tue Mar 31 2020 11:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46971 * 299.99776 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99521 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 C 1.34505 * 125.78931 * 89.71722 * 19 18 17 21 21 C 1.41387 * 106.84103 * 179.89262 * 20 19 18 22 22 C 1.34513 * 106.83741 * 0.36401 * 21 20 19 23 23 O 1.34296 * 108.42150 * 359.78110 * 22 21 20 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.07997 * 126.58041 * 0.02562 * 20 19 18 37 37 H 1.08004 * 126.57916 * 180.16822 * 21 20 19 38 38 H 1.08001 * 125.78389 * 179.74866 * 22 21 20 39 39 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 40 40 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 41 41 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 42 42 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 43 43 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 44 44 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1614 -3.7405 0.0005 11 7 1.2205 -4.3066 -0.9855 12 6 0.8822 -5.5566 -1.3586 13 8 1.4092 -6.5115 -0.8281 14 6 -0.1511 -5.7681 -2.4351 15 6 -1.6346 -5.3237 -2.4657 16 6 -1.4825 -6.0579 -3.8470 17 7 -2.4874 -6.2858 -4.8940 18 6 -2.9927 -5.0127 -5.4248 19 6 -4.0185 -5.2862 -6.4944 20 6 -5.3410 -5.4322 -6.2971 21 6 -5.9203 -5.6710 -7.5645 22 6 -4.9161 -5.6647 -8.4594 23 8 -3.7665 -5.4313 -7.8056 24 6 -0.6905 -7.0923 -3.0181 25 6 -0.1340 -5.2986 -3.9110 26 6 0.7991 -2.9540 -1.3990 27 1 -0.4850 0.8401 -0.0004 28 1 0.4602 -2.5346 0.7498 29 1 3.1580 -3.5544 -0.3997 30 1 2.1761 -4.2746 0.9506 31 1 -2.2818 -5.8304 -1.7498 32 1 -1.7912 -4.2461 -2.5160 33 1 -3.2428 -6.8600 -4.5512 34 1 -3.4513 -4.4396 -4.6190 35 1 -2.1667 -4.4434 -5.8511 36 1 -5.8608 -5.3755 -5.3522 37 1 -6.9678 -5.8312 -7.7735 38 1 -5.0172 -5.8215 -9.5232 39 1 0.0364 -7.6750 -3.5839 40 1 -1.2905 -7.6869 -2.3293 41 1 -0.1970 -4.2195 -4.0514 42 1 0.6143 -5.7819 -4.5391 43 1 -0.2738 -2.8602 -1.5663 44 1 1.3956 -2.5369 -2.2104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277399054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:19 Heat of formation + Delta-G solvation = 99.025112 kcal Electronic energy + Delta-G solvation = -25612.719650 eV Core-core repulsion = 21921.979548 eV Total energy + Delta-G solvation = -3690.740101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.46472 -43.06867 -40.61993 -38.50823 -36.19310 -34.62593 -33.80353 -31.19255 -30.68643 -27.65872 -27.02354 -26.88472 -26.67301 -26.17176 -24.64326 -22.64368 -21.79978 -21.36276 -20.02511 -19.21919 -18.69461 -18.41475 -17.84486 -17.27071 -16.97891 -16.60094 -16.32346 -16.12580 -15.50713 -15.35927 -15.16005 -14.86174 -14.75269 -14.67075 -14.11971 -13.71168 -13.68467 -13.47764 -13.32859 -13.15616 -12.81920 -12.70826 -12.61456 -12.52047 -12.30049 -12.23148 -12.21283 -11.51133 -11.37991 -11.31035 -11.13058 -10.84700 -10.75633 -10.54107 -9.70293 -9.57993 -9.36868 -8.16357 -6.26906 0.75731 1.43011 1.45736 1.49984 1.59767 1.69126 1.88466 2.10166 2.46062 2.77760 3.11867 3.14637 3.18281 3.26362 3.44847 3.52446 3.67006 3.83647 4.15181 4.16694 4.28573 4.36407 4.41824 4.42410 4.51574 4.55757 4.57064 4.64020 4.67601 4.81701 4.83423 4.86256 4.90069 4.94994 4.97501 5.01340 5.03167 5.10132 5.21697 5.60035 5.61527 5.77910 5.81826 6.15156 6.22649 6.28223 6.80828 6.83718 7.13231 7.42985 8.93416 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002918 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.818390 B = 9592.123078 C =11275.475115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.107 3.893 11 N -0.633 5.633 12 C 0.582 3.418 13 O -0.594 6.594 14 C -0.173 4.173 15 C -0.130 4.130 16 C 0.076 3.924 17 N -0.619 5.619 18 C 0.140 3.860 19 C -0.027 4.027 20 C -0.209 4.209 21 C -0.229 4.229 22 C -0.040 4.040 23 O -0.190 6.190 24 C -0.073 4.073 25 C -0.084 4.084 26 C 0.124 3.876 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.363 0.637 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 -9.518 -15.031 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.005 3.995 10 C -0.015 4.015 11 N -0.365 5.365 12 C 0.372 3.628 13 O -0.476 6.476 14 C -0.177 4.177 15 C -0.170 4.170 16 C -0.017 4.017 17 N -0.249 5.249 18 C 0.012 3.988 19 C -0.077 4.077 20 C -0.229 4.229 21 C -0.248 4.248 22 C -0.107 4.107 23 O -0.086 6.086 24 C -0.111 4.111 25 C -0.122 4.122 26 C 0.002 3.998 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.184 0.816 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.251 0.749 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.474 -10.155 -15.476 21.268 hybrid contribution -0.356 1.187 1.081 1.645 sum -10.829 -8.968 -14.395 20.122 Atomic orbital electron populations 1.70049 1.07258 1.27718 1.50377 1.25712 0.95573 1.02349 0.94130 0.85542 0.79227 0.79602 0.77498 1.18989 1.20555 1.21027 1.21280 0.93321 0.90585 1.51482 0.91695 1.20407 0.94221 0.91800 0.93116 1.23454 0.94583 0.92467 0.90996 1.50327 1.41659 1.04850 1.39686 1.18762 0.81576 0.81012 0.81442 1.90611 1.57564 1.41483 1.57983 1.23302 0.96392 1.02287 0.95734 1.25183 0.91908 1.01248 0.98709 1.23926 0.92858 0.96240 0.88633 1.59854 1.16972 1.15946 1.32132 1.20253 0.95220 0.91095 0.92236 1.22295 0.95496 1.07206 0.82676 1.21954 0.93326 1.07114 1.00467 1.22180 1.01705 1.08459 0.92464 1.24811 0.81920 1.03923 1.00078 1.84034 1.35685 1.69410 1.19517 1.23787 0.97316 0.93833 0.96172 1.24104 0.96287 1.00645 0.91154 1.23459 0.99340 0.76492 1.00538 0.92673 0.94528 0.89661 0.91842 0.90011 0.90346 0.81564 0.90165 0.89237 0.82269 0.81466 0.74938 0.89935 0.89752 0.89822 0.89849 0.91720 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.87 13.27 21.45 0.28 -48.59 16 2 C 0.02 1.15 5.46 84.66 0.46 1.62 16 3 Si 0.96 40.26 29.54 68.60 2.03 42.28 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -26.36 8.77 25.60 0.22 -26.14 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.02 1.11 3.62 -10.88 -0.04 1.07 16 10 C 0.11 4.43 8.39 86.48 0.73 5.16 16 11 N -0.63 -25.65 3.61 -836.83 -3.02 -28.66 16 12 C 0.58 23.14 8.17 87.66 0.72 23.86 16 13 O -0.59 -27.32 17.82 -3.03 -0.05 -27.38 16 14 C -0.17 -5.28 3.11 -63.68 -0.20 -5.48 16 15 C -0.13 -3.27 7.95 31.90 0.25 -3.02 16 16 C 0.08 1.66 3.89 -6.41 -0.02 1.64 16 17 N -0.62 -11.65 6.84 -526.10 -3.60 -15.25 16 18 C 0.14 2.55 6.22 85.56 0.53 3.08 16 19 C -0.03 -0.51 6.83 24.83 0.17 -0.34 16 20 C -0.21 -3.55 10.81 22.19 0.24 -3.31 16 21 C -0.23 -3.40 10.91 22.19 0.24 -3.16 16 22 C -0.04 -0.58 12.09 66.97 0.81 0.22 16 23 O -0.19 -3.95 10.65 -2.42 -0.03 -3.97 16 24 C -0.07 -1.82 7.78 30.61 0.24 -1.58 16 25 C -0.08 -2.12 7.84 31.07 0.24 -1.87 16 26 C 0.12 5.07 8.17 86.48 0.71 5.77 16 27 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 28 H 0.04 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.09 3.35 8.09 -2.39 -0.02 3.33 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 1.96 7.91 -2.39 -0.02 1.94 16 32 H 0.08 2.05 7.45 -2.39 -0.02 2.03 16 33 H 0.36 5.78 8.81 -89.70 -0.79 4.99 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.08 2.03 7.94 -2.39 -0.02 2.02 16 40 H 0.08 1.98 7.91 -2.39 -0.02 1.96 16 41 H 0.08 2.10 7.97 -2.38 -0.02 2.08 16 42 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 43 H 0.06 2.61 7.63 -2.39 -0.02 2.59 16 44 H 0.08 3.17 8.09 -2.38 -0.02 3.15 16 Total: -1.00 -62.91 375.62 1.13 -61.78 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.22 Total: 22.28 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 5.30 Total: -2.49 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -6.33 Total: -92.51 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.08 Total: -31.35 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Total: -62.91 1.13 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277399054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.803 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds