Wall clock time and date at job start Tue Mar 31 2020 11:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 120.00392 * 2 1 4 4 H 1.48509 * 109.47317 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47410 * 240.00092 * 3 2 1 6 6 H 1.48504 * 109.47585 * 119.99808 * 3 2 1 7 7 C 1.38799 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00175 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47396 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99541 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00166 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63080 * 354.65956 * 13 11 10 15 15 C 1.52760 * 109.01088 * 233.58570 * 14 13 11 16 16 C 1.53047 * 109.38190 * 305.58959 * 15 14 13 17 17 C 1.53038 * 109.53850 * 61.23848 * 16 15 14 18 18 C 1.46924 * 120.63234 * 174.94529 * 13 11 10 19 19 H 1.08997 * 109.58671 * 246.15566 * 18 13 11 20 20 C 1.53001 * 109.58657 * 6.57533 * 18 13 11 21 21 N 1.46895 * 109.47335 * 181.06897 * 20 18 13 22 22 C 1.46905 * 111.00217 * 185.56856 * 21 20 18 23 23 C 1.52998 * 109.47098 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47074 * 180.02562 * 23 22 21 25 25 O 1.42895 * 109.47386 * 179.97438 * 24 23 22 26 26 H 0.96999 * 120.00304 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47467 * 300.00244 * 10 9 7 28 28 H 1.09003 * 109.47202 * 60.00052 * 10 9 7 29 29 H 1.08995 * 109.58637 * 353.42393 * 14 13 11 30 30 H 1.09007 * 109.58545 * 113.84803 * 14 13 11 31 31 H 1.08991 * 109.56662 * 185.55668 * 15 14 13 32 32 H 1.08995 * 109.38650 * 65.51624 * 15 14 13 33 33 H 1.08993 * 109.45962 * 301.21897 * 16 15 14 34 34 H 1.09002 * 109.45996 * 181.25829 * 16 15 14 35 35 H 1.08998 * 109.50127 * 178.67744 * 17 16 15 36 36 H 1.09010 * 109.49669 * 58.58309 * 17 16 15 37 37 H 1.08999 * 109.47369 * 301.07887 * 20 18 13 38 38 H 1.09007 * 109.46920 * 61.07203 * 20 18 13 39 39 H 1.00901 * 110.99791 * 61.62019 * 21 20 18 40 40 H 1.08999 * 109.46719 * 300.00248 * 22 21 20 41 41 H 1.08999 * 109.46265 * 60.00265 * 22 21 20 42 42 H 1.08995 * 109.47013 * 300.00016 * 23 22 21 43 43 H 1.08996 * 109.46964 * 60.00400 * 23 22 21 44 44 H 1.09003 * 109.47262 * 300.00068 * 24 23 22 45 45 H 1.09007 * 109.47027 * 59.99775 * 24 23 22 46 46 H 0.96698 * 114.00076 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7465 -0.0006 5 1 3.1041 1.6963 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0038 13 7 2.8438 -6.3432 0.0049 14 6 4.2915 -6.1210 -0.1119 15 6 4.8323 -6.9613 -1.2673 16 6 4.4353 -8.4248 -1.0603 17 6 2.9096 -8.5442 -1.0466 18 6 2.3474 -7.7215 0.1169 19 1 2.6769 -8.1528 1.0621 20 6 0.8187 -7.7228 0.0546 21 7 0.3241 -9.0991 0.1925 22 6 -1.1318 -9.1566 0.0055 23 6 -1.6087 -10.6025 0.1567 24 6 -3.1250 -10.6624 -0.0386 25 8 -3.5704 -12.0129 0.1020 26 1 -0.4850 -0.8400 0.0004 27 1 3.1243 -3.7322 -0.8872 28 1 3.1243 -3.7307 0.8928 29 1 4.4847 -5.0662 -0.3072 30 1 4.7829 -6.4192 0.8143 31 1 5.9187 -6.8803 -1.3004 32 1 4.4118 -6.5995 -2.2056 33 1 4.8357 -8.7788 -0.1105 34 1 4.8395 -9.0291 -1.8725 35 1 2.6276 -9.5897 -0.9227 36 1 2.5067 -8.1672 -1.9867 37 1 0.4215 -7.1110 0.8646 38 1 0.4937 -7.3141 -0.9023 39 1 0.5900 -9.4913 1.0833 40 1 -1.6192 -8.5333 0.7552 41 1 -1.3848 -8.7924 -0.9902 42 1 -1.1213 -11.2260 -0.5926 43 1 -1.3557 -10.9662 1.1526 44 1 -3.6129 -10.0387 0.7105 45 1 -3.3777 -10.2987 -1.0347 46 1 -4.5243 -12.1260 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317181451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:31 Heat of formation + Delta-G solvation = -90.825313 kcal Electronic energy + Delta-G solvation = -24547.944035 eV Core-core repulsion = 20984.415353 eV Total energy + Delta-G solvation = -3563.528682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.42821 -37.65203 -37.24532 -36.18102 -33.12188 -32.76169 -32.54617 -30.55167 -29.14202 -26.44976 -24.90325 -24.56325 -23.73978 -21.85161 -21.47776 -20.98589 -19.07645 -18.16152 -17.63185 -16.82452 -16.19722 -16.08438 -15.54287 -15.11129 -14.86536 -14.57359 -14.42248 -14.22614 -13.90728 -13.85342 -13.46137 -13.35718 -13.31207 -12.99621 -12.41339 -12.25758 -12.15365 -12.04147 -11.85502 -11.64341 -11.38175 -11.28886 -11.07204 -11.00438 -10.93826 -10.77783 -10.59587 -10.24923 -10.19436 -9.58421 -9.24445 -9.03800 -8.57388 -8.24949 -8.17007 -6.69750 -6.64602 -4.02496 2.77323 2.91036 3.28865 3.35858 3.38942 3.55725 3.77396 4.21978 4.40051 4.58971 4.67324 4.72355 4.74157 4.87345 4.98419 5.00125 5.05917 5.16477 5.18552 5.20042 5.29938 5.33918 5.37719 5.44054 5.52314 5.56103 5.60628 5.72492 5.77504 5.82060 5.89266 5.93746 5.96294 5.98497 6.01297 6.06759 6.18526 6.29269 6.65446 6.95663 7.28958 7.33291 7.49571 7.89249 8.45316 8.47612 9.24547 10.79310 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003039 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.187070 B = 9210.124764 C =11254.311988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.083 2.917 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.065 0.935 9 S -0.117 6.117 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.614 5.614 14 C 0.109 3.891 15 C -0.137 4.137 16 C -0.121 4.121 17 C -0.120 4.120 18 C 0.153 3.847 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.697 5.697 22 C 0.067 3.933 23 C -0.117 4.117 24 C 0.075 3.925 25 O -0.577 6.577 26 H 0.278 0.722 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.333 0.667 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -20.990 -0.393 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.909 3.091 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.755 4.755 8 H 0.083 0.917 9 S 0.109 5.891 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.351 5.351 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.158 4.158 17 C -0.159 4.159 18 C 0.050 3.950 19 H 0.083 0.917 20 C -0.062 4.062 21 N -0.329 5.329 22 C -0.063 4.063 23 C -0.155 4.155 24 C -0.003 4.003 25 O -0.382 6.382 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.684 -19.869 -0.948 20.230 hybrid contribution 1.047 -0.782 0.713 1.489 sum 4.731 -20.651 -0.235 21.187 Atomic orbital electron populations 1.70801 1.06705 1.30950 1.43356 1.26052 0.96324 1.02135 0.93009 0.83337 0.74778 0.74219 0.76724 1.20266 1.21122 1.21126 1.23690 0.95988 0.92177 1.63625 0.91661 1.84769 1.08254 0.98861 1.97205 1.23384 1.04964 0.94753 1.04915 1.20302 0.86330 0.86144 0.75106 1.90702 1.15436 1.84407 1.48350 1.48143 1.06840 1.05573 1.74497 1.21642 0.80012 1.01228 0.98561 1.21859 1.00817 0.95782 0.99024 1.21549 0.96391 0.96085 1.01803 1.21875 0.94548 1.00908 0.98525 1.21153 0.94472 0.81239 0.98172 0.91657 1.22636 0.92445 0.86692 1.04392 1.60465 1.11882 1.21998 1.38551 1.21717 0.87953 0.94999 1.01596 1.21465 0.93642 0.97203 1.03159 1.22142 0.95475 0.82904 0.99760 1.86457 1.28429 1.27874 1.95468 0.91011 0.89114 0.89122 0.89318 0.91514 0.90775 0.91374 0.92014 0.91823 0.89881 0.91757 0.91936 0.89551 0.85004 0.94943 0.90816 0.90482 0.91526 0.93613 0.93428 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.41 13.67 55.49 0.76 -26.65 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 24.81 29.92 -169.99 -5.09 19.73 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.61 -17.39 9.50 30.94 0.29 -17.09 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 9 S -0.12 -3.13 19.60 -107.50 -2.11 -5.23 16 10 C -0.13 -2.60 4.56 36.01 0.16 -2.43 16 11 C 0.53 9.78 7.63 -10.99 -0.08 9.70 16 12 O -0.51 -10.84 11.27 5.55 0.06 -10.78 16 13 N -0.61 -8.59 2.98 -165.48 -0.49 -9.08 16 14 C 0.11 1.19 6.30 -3.93 -0.02 1.17 16 15 C -0.14 -1.27 6.07 -26.83 -0.16 -1.43 16 16 C -0.12 -1.06 5.89 -26.69 -0.16 -1.22 16 17 C -0.12 -1.27 5.15 -26.61 -0.14 -1.40 16 18 C 0.15 1.88 3.17 -67.60 -0.21 1.67 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.07 0.92 3.52 -3.83 -0.01 0.91 16 21 N -0.70 -7.82 5.90 -113.78 -0.67 -8.49 16 22 C 0.07 0.73 5.68 -3.82 -0.02 0.71 16 23 C -0.12 -1.12 5.84 -26.73 -0.16 -1.27 16 24 C 0.08 0.66 7.05 37.16 0.26 0.92 16 25 O -0.58 -5.28 13.66 -35.23 -0.48 -5.76 16 26 H 0.28 8.78 7.12 -40.82 -0.29 8.48 16 27 H 0.09 1.72 7.47 -51.92 -0.39 1.33 16 28 H 0.09 1.72 8.12 -51.91 -0.42 1.30 16 29 H 0.09 1.00 5.96 -51.93 -0.31 0.69 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 1.05 6.35 -51.93 -0.33 0.72 16 38 H 0.09 1.44 7.11 -51.93 -0.37 1.07 16 39 H 0.33 3.30 8.79 -39.29 -0.35 2.96 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 46 H 0.38 1.71 9.12 45.56 0.42 2.12 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -34.25 375.67 -9.85 -44.10 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.15 Total: 5.35 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.35 Total: -8.85 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.41 Total: -44.22 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.42 Total: -16.54 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.09 Total: 19.73 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.25 -9.85 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317181451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.725 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds