Wall clock time and date at job start Tue Mar 31 2020 11:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 120.00392 * 2 1 4 4 H 1.48509 * 109.47317 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47410 * 240.00092 * 3 2 1 6 6 H 1.48504 * 109.47585 * 119.99808 * 3 2 1 7 7 C 1.38799 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00175 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47396 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99541 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00166 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63080 * 354.65956 * 13 11 10 15 15 C 1.52760 * 109.01088 * 233.58570 * 14 13 11 16 16 C 1.53047 * 109.38190 * 305.58959 * 15 14 13 17 17 C 1.53038 * 109.53850 * 61.23848 * 16 15 14 18 18 C 1.46924 * 120.63234 * 174.94529 * 13 11 10 19 19 H 1.08997 * 109.58671 * 246.15566 * 18 13 11 20 20 C 1.53001 * 109.58657 * 6.57533 * 18 13 11 21 21 N 1.46895 * 109.47335 * 181.06897 * 20 18 13 22 22 C 1.46905 * 111.00217 * 185.56856 * 21 20 18 23 23 C 1.52998 * 109.47098 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47074 * 180.02562 * 23 22 21 25 25 O 1.42895 * 109.47386 * 179.97438 * 24 23 22 26 26 H 0.96999 * 120.00304 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47467 * 300.00244 * 10 9 7 28 28 H 1.09003 * 109.47202 * 60.00052 * 10 9 7 29 29 H 1.08995 * 109.58637 * 353.42393 * 14 13 11 30 30 H 1.09007 * 109.58545 * 113.84803 * 14 13 11 31 31 H 1.08991 * 109.56662 * 185.55668 * 15 14 13 32 32 H 1.08995 * 109.38650 * 65.51624 * 15 14 13 33 33 H 1.08993 * 109.45962 * 301.21897 * 16 15 14 34 34 H 1.09002 * 109.45996 * 181.25829 * 16 15 14 35 35 H 1.08998 * 109.50127 * 178.67744 * 17 16 15 36 36 H 1.09010 * 109.49669 * 58.58309 * 17 16 15 37 37 H 1.08999 * 109.47369 * 301.07887 * 20 18 13 38 38 H 1.09007 * 109.46920 * 61.07203 * 20 18 13 39 39 H 1.00901 * 110.99791 * 61.62019 * 21 20 18 40 40 H 1.08999 * 109.46719 * 300.00248 * 22 21 20 41 41 H 1.08999 * 109.46265 * 60.00265 * 22 21 20 42 42 H 1.08995 * 109.47013 * 300.00016 * 23 22 21 43 43 H 1.08996 * 109.46964 * 60.00400 * 23 22 21 44 44 H 1.09003 * 109.47262 * 300.00068 * 24 23 22 45 45 H 1.09007 * 109.47027 * 59.99775 * 24 23 22 46 46 H 0.96698 * 114.00076 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7465 -0.0006 5 1 3.1041 1.6963 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0038 13 7 2.8438 -6.3432 0.0049 14 6 4.2915 -6.1210 -0.1119 15 6 4.8323 -6.9613 -1.2673 16 6 4.4353 -8.4248 -1.0603 17 6 2.9096 -8.5442 -1.0466 18 6 2.3474 -7.7215 0.1169 19 1 2.6769 -8.1528 1.0621 20 6 0.8187 -7.7228 0.0546 21 7 0.3241 -9.0991 0.1925 22 6 -1.1318 -9.1566 0.0055 23 6 -1.6087 -10.6025 0.1567 24 6 -3.1250 -10.6624 -0.0386 25 8 -3.5704 -12.0129 0.1020 26 1 -0.4850 -0.8400 0.0004 27 1 3.1243 -3.7322 -0.8872 28 1 3.1243 -3.7307 0.8928 29 1 4.4847 -5.0662 -0.3072 30 1 4.7829 -6.4192 0.8143 31 1 5.9187 -6.8803 -1.3004 32 1 4.4118 -6.5995 -2.2056 33 1 4.8357 -8.7788 -0.1105 34 1 4.8395 -9.0291 -1.8725 35 1 2.6276 -9.5897 -0.9227 36 1 2.5067 -8.1672 -1.9867 37 1 0.4215 -7.1110 0.8646 38 1 0.4937 -7.3141 -0.9023 39 1 0.5900 -9.4913 1.0833 40 1 -1.6192 -8.5333 0.7552 41 1 -1.3848 -8.7924 -0.9902 42 1 -1.1213 -11.2260 -0.5926 43 1 -1.3557 -10.9662 1.1526 44 1 -3.6129 -10.0387 0.7105 45 1 -3.3777 -10.2987 -1.0347 46 1 -4.5243 -12.1260 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317181451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:28 Heat of formation + Delta-G solvation = -116.762654 kcal Electronic energy + Delta-G solvation = -24549.068763 eV Core-core repulsion = 20984.415353 eV Total energy + Delta-G solvation = -3564.653410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65629 -38.59719 -38.27602 -37.08201 -34.76736 -34.20004 -33.69489 -31.49786 -30.54211 -27.50549 -27.01536 -25.55920 -24.65703 -22.89466 -22.38391 -21.93342 -20.65252 -19.84331 -18.39007 -18.02678 -17.42153 -17.08979 -16.82101 -16.45424 -15.98360 -15.75373 -15.54968 -15.42563 -15.28224 -15.02360 -14.68719 -14.39313 -14.37700 -14.28477 -14.04455 -13.76769 -13.56219 -13.12697 -13.08297 -12.75023 -12.57970 -12.21909 -12.08116 -11.99538 -11.96479 -11.90169 -11.60996 -11.55336 -11.43545 -11.10990 -10.93249 -10.58244 -10.33392 -9.70702 -9.28305 -8.94047 -8.88549 -6.29139 1.16099 1.46815 1.50553 1.59376 1.79474 1.95485 2.32643 2.90841 3.00768 3.09726 3.48737 3.63649 3.78004 3.84662 3.93707 3.99357 4.07251 4.12069 4.20291 4.24485 4.28010 4.31059 4.34155 4.46860 4.49749 4.59810 4.66593 4.70099 4.74021 4.93411 4.97201 5.00525 5.08967 5.11391 5.17105 5.22751 5.24422 5.47137 5.60199 5.62363 5.89295 6.13245 6.24927 6.40461 6.84232 7.04496 7.07814 8.49419 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003039 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.187070 B = 9210.124764 C =11254.311988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.136 2.864 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.613 4.613 8 H 0.074 0.926 9 S -0.194 6.194 10 C -0.104 4.104 11 C 0.528 3.472 12 O -0.551 6.551 13 N -0.602 5.602 14 C 0.099 3.901 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.112 4.112 18 C 0.152 3.848 19 H 0.088 0.912 20 C 0.081 3.919 21 N -0.685 5.685 22 C 0.069 3.931 23 C -0.107 4.107 24 C 0.075 3.925 25 O -0.594 6.594 26 H 0.260 0.740 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.345 0.655 40 H 0.022 0.978 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 -22.368 -0.113 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.953 3.047 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.761 4.761 8 H 0.092 0.908 9 S 0.033 5.967 10 C -0.256 4.256 11 C 0.316 3.684 12 O -0.430 6.430 13 N -0.337 5.337 14 C -0.023 4.023 15 C -0.170 4.170 16 C -0.153 4.153 17 C -0.150 4.150 18 C 0.049 3.951 19 H 0.106 0.894 20 C -0.048 4.048 21 N -0.318 5.318 22 C -0.060 4.060 23 C -0.145 4.145 24 C -0.003 4.003 25 O -0.402 6.402 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.163 0.837 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.672 -21.317 -0.668 22.347 hybrid contribution 0.143 -0.516 0.627 0.825 sum 6.814 -21.833 -0.041 22.872 Atomic orbital electron populations 1.70919 1.08013 1.29992 1.45931 1.27835 0.96317 1.06376 0.91693 0.82731 0.73968 0.69507 0.78480 1.20537 1.18767 1.18732 1.24023 0.96467 0.92805 1.62765 0.90766 1.84992 1.13171 1.01080 1.97431 1.23267 1.01962 0.94146 1.06221 1.20071 0.86275 0.86380 0.75678 1.90720 1.17040 1.84808 1.50384 1.48172 1.07850 1.05185 1.72494 1.21985 0.77872 1.01698 1.00731 1.21855 1.02277 0.95645 0.97258 1.21547 0.94478 0.95925 1.03376 1.21807 0.96153 1.00708 0.96367 1.21326 0.93143 0.80457 1.00171 0.89431 1.22241 0.93947 0.87351 1.01225 1.60443 1.12084 1.20039 1.39233 1.21689 0.87719 0.95996 1.00630 1.21343 0.94396 0.95625 1.03117 1.22112 0.94835 0.83055 1.00292 1.86397 1.30462 1.27821 1.95537 0.92879 0.87727 0.87621 0.89728 0.88916 0.88044 0.92983 0.90256 0.90357 0.88849 0.93908 0.95265 0.92911 0.83670 0.95930 0.91937 0.90878 0.91232 0.93092 0.92901 0.75173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.18 13.67 21.65 0.30 -57.89 16 2 C -0.02 -1.11 5.49 84.86 0.47 -0.65 16 3 Si 1.14 49.20 29.92 68.60 2.05 51.26 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.61 -35.41 9.50 67.95 0.65 -34.77 16 8 H 0.07 4.02 7.80 -2.91 -0.02 3.99 16 9 S -0.19 -10.68 19.60 -56.49 -1.11 -11.79 16 10 C -0.10 -4.21 4.56 71.24 0.32 -3.88 16 11 C 0.53 19.66 7.63 87.66 0.67 20.33 16 12 O -0.55 -24.46 11.27 -3.05 -0.03 -24.50 16 13 N -0.60 -16.15 2.98 -795.85 -2.37 -18.52 16 14 C 0.10 1.89 6.30 86.22 0.54 2.43 16 15 C -0.13 -2.02 6.07 30.53 0.19 -1.83 16 16 C -0.12 -1.60 5.89 30.62 0.18 -1.42 16 17 C -0.11 -2.13 5.15 30.67 0.16 -1.98 16 18 C 0.15 3.53 3.17 44.97 0.14 3.68 16 19 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.08 2.33 3.52 86.30 0.30 2.63 16 21 N -0.68 -15.27 5.90 -513.88 -3.03 -18.30 16 22 C 0.07 1.55 5.68 86.30 0.49 2.04 16 23 C -0.11 -1.99 5.84 30.59 0.18 -1.81 16 24 C 0.08 1.27 7.05 71.98 0.51 1.78 16 25 O -0.59 -10.18 13.66 -148.98 -2.03 -12.22 16 26 H 0.26 17.24 7.12 -92.71 -0.66 16.58 16 27 H 0.10 3.89 7.47 -2.39 -0.02 3.87 16 28 H 0.11 3.91 8.12 -2.39 -0.02 3.89 16 29 H 0.08 1.70 5.96 -2.39 -0.01 1.68 16 30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.62 7.84 -2.39 -0.02 1.60 16 36 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.03 1.04 6.35 -2.39 -0.02 1.03 16 38 H 0.05 1.88 7.11 -2.38 -0.02 1.86 16 39 H 0.35 6.45 8.79 -89.69 -0.79 5.66 16 40 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 Total: -1.00 -77.68 375.67 -1.82 -79.50 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.38 Total: 25.91 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.79 Total: -13.45 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -5.11 Total: -94.71 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.07 Total: -36.72 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.26 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.11 Total: -11.79 kcal Total: -77.68 -1.82 -79.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317181451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.265 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds