Wall clock time and date at job start Tue Mar 31 2020 12:21:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38260 * 119.99949 * 2 1
4 4 C 1.38208 * 120.00062 * 180.27649 * 3 2 1
5 5 C 1.38262 * 120.00321 * 359.73861 * 4 3 2
6 6 C 1.38214 * 119.99579 * 359.97438 * 5 4 3
7 7 C 1.38220 * 120.00506 * 179.74135 * 2 1 3
8 8 C 1.50700 * 119.99499 * 0.02562 * 7 2 1
9 9 N 1.46492 * 109.47502 * 79.72359 * 8 7 2
10 10 C 1.34778 * 120.00351 * 179.97438 * 9 8 7
11 11 O 1.21345 * 119.99684 * 0.02562 * 10 9 8
12 12 C 1.49449 * 120.00001 * 180.02562 * 10 9 8
13 13 O 1.21347 * 120.00228 * 5.09493 * 12 10 9
14 14 N 1.34774 * 120.00048 * 185.09256 * 12 10 9
15 15 C 1.46502 * 120.00331 * 185.04195 * 14 12 10
16 16 C 1.52996 * 109.47063 * 184.77839 * 15 14 12
17 17 C 1.50698 * 115.55121 * 294.81386 * 16 15 14
18 18 H 1.08003 * 119.99766 * 95.20398 * 17 16 15
19 19 C 1.37874 * 119.99926 * 274.92660 * 17 16 15
20 20 N 1.31507 * 120.00401 * 355.41780 * 19 17 16
21 21 Si 1.86807 * 119.99884 * 175.41717 * 19 17 16
22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17
23 23 H 1.48500 * 109.47138 * 120.00273 * 21 19 17
24 24 H 1.48505 * 109.47155 * 240.00161 * 21 19 17
25 25 C 1.53002 * 117.49906 * 80.48488 * 16 15 14
26 26 C 1.53002 * 117.49925 * 149.14404 * 16 15 14
27 27 H 1.09002 * 109.47362 * 270.25272 * 1 2 3
28 28 H 1.09001 * 109.47530 * 30.25759 * 1 2 3
29 29 H 1.09003 * 109.46766 * 150.25904 * 1 2 3
30 30 H 1.07998 * 119.99857 * 0.03899 * 3 2 1
31 31 H 1.08002 * 120.00405 * 179.76606 * 4 3 2
32 32 H 1.07994 * 120.00653 * 179.97438 * 5 4 3
33 33 H 1.08004 * 120.00112 * 179.97438 * 6 5 4
34 34 H 1.08999 * 109.47133 * 319.72039 * 8 7 2
35 35 H 1.09006 * 109.46963 * 199.72612 * 8 7 2
36 36 H 0.97003 * 120.00155 * 0.02562 * 9 8 7
37 37 H 0.97000 * 119.99834 * 5.03638 * 14 12 10
38 38 H 1.08991 * 109.46950 * 64.77719 * 15 14 12
39 39 H 1.09002 * 109.46795 * 304.77265 * 15 14 12
40 40 H 0.97005 * 120.00851 * 184.99676 * 20 19 17
41 41 H 1.09007 * 117.49900 * 214.99948 * 25 16 15
42 42 H 1.08994 * 117.50021 * 0.02562 * 25 16 15
43 43 H 1.09005 * 117.49794 * 359.97438 * 26 16 15
44 44 H 1.09000 * 117.49885 * 144.96827 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5803 1.1974 -0.0058
5 6 4.2717 0.0001 -0.0061
6 6 3.5806 -1.1969 -0.0001
7 6 2.1981 -1.1969 0.0054
8 6 1.4446 -2.5020 0.0107
9 7 0.9876 -2.8076 -1.3471
10 6 0.2875 -3.9345 -1.5850
11 8 0.0354 -4.6957 -0.6742
12 6 -0.1782 -4.2465 -2.9703
13 8 0.1517 -3.5347 -3.8961
14 7 -0.9646 -5.3184 -3.1915
15 6 -1.3306 -5.6884 -4.5610
16 6 -2.3166 -6.8578 -4.5271
17 6 -1.7718 -8.1517 -3.9794
18 1 -1.9191 -8.4023 -2.9392
19 6 -1.0904 -9.0182 -4.8075
20 7 -0.9936 -8.7597 -6.0932
21 14 -0.3047 -10.5597 -4.1030
22 1 -0.5561 -10.6194 -2.6407
23 1 -0.8927 -11.7573 -4.7552
24 1 1.1587 -10.5281 -4.3534
25 6 -3.7858 -6.5352 -4.2473
26 6 -3.3467 -6.9462 -5.6549
27 1 -0.3634 0.0045 1.0277
28 1 -0.3634 0.8876 -0.5178
29 1 -0.3633 -0.8923 -0.5098
30 1 1.6582 2.1326 0.0006
31 1 4.1203 2.1327 -0.0096
32 1 5.3516 0.0000 -0.0110
33 1 4.1207 -2.1322 -0.0008
34 1 0.5837 -2.4218 0.6744
35 1 2.1006 -3.2989 0.3613
36 1 1.1894 -2.1993 -2.0753
37 1 -1.2883 -5.8450 -2.4439
38 1 -0.4359 -5.9834 -5.1090
39 1 -1.7953 -4.8356 -5.0559
40 1 -0.5777 -9.4037 -6.6876
41 1 -4.3584 -7.2589 -3.6670
42 1 -4.0500 -5.4898 -4.0878
43 1 -3.3222 -6.1710 -6.4208
44 1 -3.6300 -7.9402 -6.0010
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001340227135.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:21:19
Heat of formation + Delta-G solvation = -29.304506 kcal
Electronic energy + Delta-G solvation = -25413.223978 eV
Core-core repulsion = 21716.919086 eV
Total energy + Delta-G solvation = -3696.304891 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.48070 -39.67632 -38.14899 -36.72036 -35.31597 -33.43108 -32.92079 -31.97520
-31.56942 -27.83647 -27.12271 -26.19326 -25.32511 -23.04489 -22.31668 -21.17852
-21.01272 -19.95005 -19.52786 -18.14917 -16.73154 -16.51327 -16.21997 -16.10342
-15.44406 -15.30264 -15.07157 -14.69681 -14.51351 -14.08763 -13.94542 -13.70146
-13.46734 -13.24740 -13.06431 -12.77752 -12.65558 -12.43986 -12.29986 -11.88124
-11.62900 -11.34901 -11.31432 -11.22679 -10.99727 -10.96018 -10.51360 -10.25500
-9.64015 -9.39154 -9.26250 -9.10012 -9.08123 -8.91461 -8.53912 -8.39375
-8.18575 -6.09195 -4.18844 0.91037 1.07210 1.77456 2.71725 3.25805
3.35099 3.39056 3.45994 3.59008 4.11767 4.33347 4.35957 4.49057
4.62221 4.72415 4.91363 4.99843 5.02537 5.18516 5.30407 5.33751
5.35579 5.40413 5.44142 5.54760 5.72398 5.89514 5.95599 6.13371
6.18799 6.19298 6.28181 6.31860 6.39626 6.47282 6.66345 6.67184
6.74637 6.98908 7.08139 7.21758 7.32709 7.49628 7.80876 7.84165
8.13867 8.31265 8.51693 8.83754 9.49024 10.97873
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.020442 B = 0.002658 C = 0.002510
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1369.432330 B =10532.982992 C =11152.970818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.064 4.064
3 C -0.124 4.124
4 C -0.109 4.109
5 C -0.129 4.129
6 C -0.094 4.094
7 C -0.111 4.111
8 C 0.160 3.840
9 N -0.703 5.703
10 C 0.508 3.492
11 O -0.518 6.518
12 C 0.495 3.505
13 O -0.540 6.540
14 N -0.666 5.666
15 C 0.159 3.841
16 C 0.021 3.979
17 C -0.500 4.500
18 H 0.063 0.937
19 C 0.073 3.927
20 N -0.876 5.876
21 Si 0.890 3.110
22 H -0.271 1.271
23 H -0.284 1.284
24 H -0.283 1.283
25 C -0.210 4.210
26 C -0.139 4.139
27 H 0.074 0.926
28 H 0.069 0.931
29 H 0.073 0.927
30 H 0.123 0.877
31 H 0.122 0.878
32 H 0.123 0.877
33 H 0.126 0.874
34 H 0.082 0.918
35 H 0.079 0.921
36 H 0.413 0.587
37 H 0.414 0.586
38 H 0.074 0.926
39 H 0.048 0.952
40 H 0.261 0.739
41 H 0.079 0.921
42 H 0.065 0.935
43 H 0.064 0.936
44 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.280 18.372 11.710 22.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.064 4.064
3 C -0.142 4.142
4 C -0.127 4.127
5 C -0.147 4.147
6 C -0.112 4.112
7 C -0.111 4.111
8 C 0.037 3.963
9 N -0.358 5.358
10 C 0.289 3.711
11 O -0.392 6.392
12 C 0.274 3.726
13 O -0.419 6.419
14 N -0.316 5.316
15 C 0.037 3.963
16 C 0.020 3.980
17 C -0.538 4.538
18 H 0.081 0.919
19 C -0.131 4.131
20 N -0.512 5.512
21 Si 0.718 3.282
22 H -0.195 1.195
23 H -0.210 1.210
24 H -0.209 1.209
25 C -0.247 4.247
26 C -0.178 4.178
27 H 0.092 0.908
28 H 0.088 0.912
29 H 0.092 0.908
30 H 0.141 0.859
31 H 0.140 0.860
32 H 0.141 0.859
33 H 0.144 0.856
34 H 0.100 0.900
35 H 0.098 0.902
36 H 0.249 0.751
37 H 0.250 0.750
38 H 0.092 0.908
39 H 0.066 0.934
40 H 0.071 0.929
41 H 0.098 0.902
42 H 0.084 0.916
43 H 0.083 0.917
44 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 6.449 18.219 11.532 22.505
hybrid contribution 0.558 -0.827 0.223 1.022
sum 7.007 17.392 11.754 22.130
Atomic orbital electron populations
1.20928 0.90916 1.03549 1.02721 1.19866 0.96251 0.92493 0.97799
1.21053 0.94295 0.97481 1.01380 1.21203 0.94332 0.98167 0.98994
1.21147 1.00039 0.92398 1.01116 1.21134 0.93331 0.98573 0.98210
1.19736 0.93855 0.93967 1.03591 1.20237 0.98538 0.93567 0.83947
1.45829 1.55319 1.23608 1.11015 1.20528 0.79047 0.81629 0.89896
1.90761 1.55304 1.47608 1.45566 1.19910 0.81246 0.82941 0.88454
1.90717 1.57363 1.49435 1.44410 1.45893 1.46765 1.26910 1.11992
1.21213 0.99742 0.95659 0.79703 1.19038 0.85296 0.93749 0.99938
1.20428 1.35206 1.01997 0.96122 0.91931 1.24990 0.95337 0.97899
0.94876 1.69993 1.43288 1.35150 1.02745 0.86563 0.79296 0.82836
0.79522 1.19549 1.21020 1.20920 1.23034 1.01483 0.98915 1.01270
1.22476 1.04780 1.00717 0.89778 0.90787 0.91202 0.90832 0.85871
0.85980 0.85870 0.85631 0.90020 0.90230 0.75075 0.74997 0.90801
0.93395 0.92902 0.90210 0.91647 0.91739 0.89386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.00 9.26 36.00 0.33 -0.66 16
2 C -0.06 -0.57 5.88 -104.62 -0.62 -1.18 16
3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16
4 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16
5 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16
6 C -0.09 -0.83 9.67 -39.58 -0.38 -1.21 16
7 C -0.11 -1.06 5.25 -104.62 -0.55 -1.61 16
8 C 0.16 1.70 4.93 -5.20 -0.03 1.68 16
9 N -0.70 -8.96 4.86 -61.91 -0.30 -9.26 16
10 C 0.51 8.25 7.89 -11.59 -0.09 8.15 16
11 O -0.52 -9.40 16.50 5.50 0.09 -9.31 16
12 C 0.50 9.26 7.88 -11.59 -0.09 9.17 16
13 O -0.54 -10.97 16.47 5.50 0.09 -10.88 16
14 N -0.67 -13.30 5.46 -60.73 -0.33 -13.63 16
15 C 0.16 3.53 5.53 -4.04 -0.02 3.51 16
16 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16
17 C -0.50 -12.95 8.59 -34.44 -0.30 -13.25 16
18 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16
19 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16
20 N -0.88 -24.07 12.65 55.43 0.70 -23.37 16
21 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16
22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
25 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16
26 C -0.14 -3.15 9.14 -26.69 -0.24 -3.39 16
27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16
29 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16
30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16
31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16
32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16
33 H 0.13 0.98 8.04 -52.48 -0.42 0.56 16
34 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16
35 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16
36 H 0.41 5.07 7.95 -40.82 -0.32 4.74 16
37 H 0.41 8.17 7.84 -40.82 -0.32 7.85 16
38 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16
39 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16
40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16
41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16
44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16
LS Contribution 378.24 15.07 5.70 5.70
Total: -1.00 -29.51 378.24 -9.21 -38.72
By element:
Atomic # 1 Polarization: 17.98 SS G_CDS: -6.38 Total: 11.60 kcal
Atomic # 6 Polarization: -1.58 SS G_CDS: -3.76 Total: -5.34 kcal
Atomic # 7 Polarization: -46.33 SS G_CDS: 0.07 Total: -46.26 kcal
Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.19 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -29.51 -9.21 -38.72 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340227135.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal
(2) G-P(sol) polarization free energy of solvation -29.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds