Wall clock time and date at job start Tue Mar 31 2020 12:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38260 * 119.99949 * 2 1 4 4 C 1.38208 * 120.00062 * 180.27649 * 3 2 1 5 5 C 1.38262 * 120.00321 * 359.73861 * 4 3 2 6 6 C 1.38214 * 119.99579 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.00506 * 179.74135 * 2 1 3 8 8 C 1.50700 * 119.99499 * 0.02562 * 7 2 1 9 9 N 1.46492 * 109.47502 * 79.72359 * 8 7 2 10 10 C 1.34778 * 120.00351 * 179.97438 * 9 8 7 11 11 O 1.21345 * 119.99684 * 0.02562 * 10 9 8 12 12 C 1.49449 * 120.00001 * 180.02562 * 10 9 8 13 13 O 1.21347 * 120.00228 * 5.09493 * 12 10 9 14 14 N 1.34774 * 120.00048 * 185.09256 * 12 10 9 15 15 C 1.46502 * 120.00331 * 185.04195 * 14 12 10 16 16 C 1.52996 * 109.47063 * 184.77839 * 15 14 12 17 17 C 1.50698 * 115.55121 * 294.81386 * 16 15 14 18 18 H 1.08003 * 119.99766 * 95.20398 * 17 16 15 19 19 C 1.37874 * 119.99926 * 274.92660 * 17 16 15 20 20 N 1.31507 * 120.00401 * 355.41780 * 19 17 16 21 21 Si 1.86807 * 119.99884 * 175.41717 * 19 17 16 22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47138 * 120.00273 * 21 19 17 24 24 H 1.48505 * 109.47155 * 240.00161 * 21 19 17 25 25 C 1.53002 * 117.49906 * 80.48488 * 16 15 14 26 26 C 1.53002 * 117.49925 * 149.14404 * 16 15 14 27 27 H 1.09002 * 109.47362 * 270.25272 * 1 2 3 28 28 H 1.09001 * 109.47530 * 30.25759 * 1 2 3 29 29 H 1.09003 * 109.46766 * 150.25904 * 1 2 3 30 30 H 1.07998 * 119.99857 * 0.03899 * 3 2 1 31 31 H 1.08002 * 120.00405 * 179.76606 * 4 3 2 32 32 H 1.07994 * 120.00653 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.00112 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47133 * 319.72039 * 8 7 2 35 35 H 1.09006 * 109.46963 * 199.72612 * 8 7 2 36 36 H 0.97003 * 120.00155 * 0.02562 * 9 8 7 37 37 H 0.97000 * 119.99834 * 5.03638 * 14 12 10 38 38 H 1.08991 * 109.46950 * 64.77719 * 15 14 12 39 39 H 1.09002 * 109.46795 * 304.77265 * 15 14 12 40 40 H 0.97005 * 120.00851 * 184.99676 * 20 19 17 41 41 H 1.09007 * 117.49900 * 214.99948 * 25 16 15 42 42 H 1.08994 * 117.50021 * 0.02562 * 25 16 15 43 43 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 44 44 H 1.09000 * 117.49885 * 144.96827 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0061 6 6 3.5806 -1.1969 -0.0001 7 6 2.1981 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0107 9 7 0.9876 -2.8076 -1.3471 10 6 0.2875 -3.9345 -1.5850 11 8 0.0354 -4.6957 -0.6742 12 6 -0.1782 -4.2465 -2.9703 13 8 0.1517 -3.5347 -3.8961 14 7 -0.9646 -5.3184 -3.1915 15 6 -1.3306 -5.6884 -4.5610 16 6 -2.3166 -6.8578 -4.5271 17 6 -1.7718 -8.1517 -3.9794 18 1 -1.9191 -8.4023 -2.9392 19 6 -1.0904 -9.0182 -4.8075 20 7 -0.9936 -8.7597 -6.0932 21 14 -0.3047 -10.5597 -4.1030 22 1 -0.5561 -10.6194 -2.6407 23 1 -0.8927 -11.7573 -4.7552 24 1 1.1587 -10.5281 -4.3534 25 6 -3.7858 -6.5352 -4.2473 26 6 -3.3467 -6.9462 -5.6549 27 1 -0.3634 0.0045 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6582 2.1326 0.0006 31 1 4.1203 2.1327 -0.0096 32 1 5.3516 0.0000 -0.0110 33 1 4.1207 -2.1322 -0.0008 34 1 0.5837 -2.4218 0.6744 35 1 2.1006 -3.2989 0.3613 36 1 1.1894 -2.1993 -2.0753 37 1 -1.2883 -5.8450 -2.4439 38 1 -0.4359 -5.9834 -5.1090 39 1 -1.7953 -4.8356 -5.0559 40 1 -0.5777 -9.4037 -6.6876 41 1 -4.3584 -7.2589 -3.6670 42 1 -4.0500 -5.4898 -4.0878 43 1 -3.3222 -6.1710 -6.4208 44 1 -3.6300 -7.9402 -6.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340227135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:19 Heat of formation + Delta-G solvation = -29.304506 kcal Electronic energy + Delta-G solvation = -25413.223978 eV Core-core repulsion = 21716.919086 eV Total energy + Delta-G solvation = -3696.304891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48070 -39.67632 -38.14899 -36.72036 -35.31597 -33.43108 -32.92079 -31.97520 -31.56942 -27.83647 -27.12271 -26.19326 -25.32511 -23.04489 -22.31668 -21.17852 -21.01272 -19.95005 -19.52786 -18.14917 -16.73154 -16.51327 -16.21997 -16.10342 -15.44406 -15.30264 -15.07157 -14.69681 -14.51351 -14.08763 -13.94542 -13.70146 -13.46734 -13.24740 -13.06431 -12.77752 -12.65558 -12.43986 -12.29986 -11.88124 -11.62900 -11.34901 -11.31432 -11.22679 -10.99727 -10.96018 -10.51360 -10.25500 -9.64015 -9.39154 -9.26250 -9.10012 -9.08123 -8.91461 -8.53912 -8.39375 -8.18575 -6.09195 -4.18844 0.91037 1.07210 1.77456 2.71725 3.25805 3.35099 3.39056 3.45994 3.59008 4.11767 4.33347 4.35957 4.49057 4.62221 4.72415 4.91363 4.99843 5.02537 5.18516 5.30407 5.33751 5.35579 5.40413 5.44142 5.54760 5.72398 5.89514 5.95599 6.13371 6.18799 6.19298 6.28181 6.31860 6.39626 6.47282 6.66345 6.67184 6.74637 6.98908 7.08139 7.21758 7.32709 7.49628 7.80876 7.84165 8.13867 8.31265 8.51693 8.83754 9.49024 10.97873 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002658 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.432330 B =10532.982992 C =11152.970818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 C -0.124 4.124 4 C -0.109 4.109 5 C -0.129 4.129 6 C -0.094 4.094 7 C -0.111 4.111 8 C 0.160 3.840 9 N -0.703 5.703 10 C 0.508 3.492 11 O -0.518 6.518 12 C 0.495 3.505 13 O -0.540 6.540 14 N -0.666 5.666 15 C 0.159 3.841 16 C 0.021 3.979 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.413 0.587 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 18.372 11.710 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.127 4.127 5 C -0.147 4.147 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.037 3.963 9 N -0.358 5.358 10 C 0.289 3.711 11 O -0.392 6.392 12 C 0.274 3.726 13 O -0.419 6.419 14 N -0.316 5.316 15 C 0.037 3.963 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.718 3.282 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.247 4.247 26 C -0.178 4.178 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.449 18.219 11.532 22.505 hybrid contribution 0.558 -0.827 0.223 1.022 sum 7.007 17.392 11.754 22.130 Atomic orbital electron populations 1.20928 0.90916 1.03549 1.02721 1.19866 0.96251 0.92493 0.97799 1.21053 0.94295 0.97481 1.01380 1.21203 0.94332 0.98167 0.98994 1.21147 1.00039 0.92398 1.01116 1.21134 0.93331 0.98573 0.98210 1.19736 0.93855 0.93967 1.03591 1.20237 0.98538 0.93567 0.83947 1.45829 1.55319 1.23608 1.11015 1.20528 0.79047 0.81629 0.89896 1.90761 1.55304 1.47608 1.45566 1.19910 0.81246 0.82941 0.88454 1.90717 1.57363 1.49435 1.44410 1.45893 1.46765 1.26910 1.11992 1.21213 0.99742 0.95659 0.79703 1.19038 0.85296 0.93749 0.99938 1.20428 1.35206 1.01997 0.96122 0.91931 1.24990 0.95337 0.97899 0.94876 1.69993 1.43288 1.35150 1.02745 0.86563 0.79296 0.82836 0.79522 1.19549 1.21020 1.20920 1.23034 1.01483 0.98915 1.01270 1.22476 1.04780 1.00717 0.89778 0.90787 0.91202 0.90832 0.85871 0.85980 0.85870 0.85631 0.90020 0.90230 0.75075 0.74997 0.90801 0.93395 0.92902 0.90210 0.91647 0.91739 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.26 36.00 0.33 -0.66 16 2 C -0.06 -0.57 5.88 -104.62 -0.62 -1.18 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16 5 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 6 C -0.09 -0.83 9.67 -39.58 -0.38 -1.21 16 7 C -0.11 -1.06 5.25 -104.62 -0.55 -1.61 16 8 C 0.16 1.70 4.93 -5.20 -0.03 1.68 16 9 N -0.70 -8.96 4.86 -61.91 -0.30 -9.26 16 10 C 0.51 8.25 7.89 -11.59 -0.09 8.15 16 11 O -0.52 -9.40 16.50 5.50 0.09 -9.31 16 12 C 0.50 9.26 7.88 -11.59 -0.09 9.17 16 13 O -0.54 -10.97 16.47 5.50 0.09 -10.88 16 14 N -0.67 -13.30 5.46 -60.73 -0.33 -13.63 16 15 C 0.16 3.53 5.53 -4.04 -0.02 3.51 16 16 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16 17 C -0.50 -12.95 8.59 -34.44 -0.30 -13.25 16 18 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 19 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 20 N -0.88 -24.07 12.65 55.43 0.70 -23.37 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 26 C -0.14 -3.15 9.14 -26.69 -0.24 -3.39 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.98 8.04 -52.48 -0.42 0.56 16 34 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 35 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16 36 H 0.41 5.07 7.95 -40.82 -0.32 4.74 16 37 H 0.41 8.17 7.84 -40.82 -0.32 7.85 16 38 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -29.51 378.24 -9.21 -38.72 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.38 Total: 11.60 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.76 Total: -5.34 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.07 Total: -46.26 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.51 -9.21 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340227135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds