Wall clock time and date at job start Tue Mar 31 2020 12:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38260 * 119.99949 * 2 1 4 4 C 1.38208 * 120.00062 * 180.27649 * 3 2 1 5 5 C 1.38262 * 120.00321 * 359.73861 * 4 3 2 6 6 C 1.38214 * 119.99579 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.00506 * 179.74135 * 2 1 3 8 8 C 1.50700 * 119.99499 * 0.02562 * 7 2 1 9 9 N 1.46492 * 109.47502 * 79.72359 * 8 7 2 10 10 C 1.34778 * 120.00351 * 179.97438 * 9 8 7 11 11 O 1.21345 * 119.99684 * 0.02562 * 10 9 8 12 12 C 1.49449 * 120.00001 * 180.02562 * 10 9 8 13 13 O 1.21347 * 120.00228 * 5.09493 * 12 10 9 14 14 N 1.34774 * 120.00048 * 185.09256 * 12 10 9 15 15 C 1.46502 * 120.00331 * 185.04195 * 14 12 10 16 16 C 1.52996 * 109.47063 * 184.77839 * 15 14 12 17 17 C 1.50698 * 115.55121 * 294.81386 * 16 15 14 18 18 H 1.08003 * 119.99766 * 95.20398 * 17 16 15 19 19 C 1.37874 * 119.99926 * 274.92660 * 17 16 15 20 20 N 1.31507 * 120.00401 * 355.41780 * 19 17 16 21 21 Si 1.86807 * 119.99884 * 175.41717 * 19 17 16 22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47138 * 120.00273 * 21 19 17 24 24 H 1.48505 * 109.47155 * 240.00161 * 21 19 17 25 25 C 1.53002 * 117.49906 * 80.48488 * 16 15 14 26 26 C 1.53002 * 117.49925 * 149.14404 * 16 15 14 27 27 H 1.09002 * 109.47362 * 270.25272 * 1 2 3 28 28 H 1.09001 * 109.47530 * 30.25759 * 1 2 3 29 29 H 1.09003 * 109.46766 * 150.25904 * 1 2 3 30 30 H 1.07998 * 119.99857 * 0.03899 * 3 2 1 31 31 H 1.08002 * 120.00405 * 179.76606 * 4 3 2 32 32 H 1.07994 * 120.00653 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.00112 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47133 * 319.72039 * 8 7 2 35 35 H 1.09006 * 109.46963 * 199.72612 * 8 7 2 36 36 H 0.97003 * 120.00155 * 0.02562 * 9 8 7 37 37 H 0.97000 * 119.99834 * 5.03638 * 14 12 10 38 38 H 1.08991 * 109.46950 * 64.77719 * 15 14 12 39 39 H 1.09002 * 109.46795 * 304.77265 * 15 14 12 40 40 H 0.97005 * 120.00851 * 184.99676 * 20 19 17 41 41 H 1.09007 * 117.49900 * 214.99948 * 25 16 15 42 42 H 1.08994 * 117.50021 * 0.02562 * 25 16 15 43 43 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 44 44 H 1.09000 * 117.49885 * 144.96827 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0061 6 6 3.5806 -1.1969 -0.0001 7 6 2.1981 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0107 9 7 0.9876 -2.8076 -1.3471 10 6 0.2875 -3.9345 -1.5850 11 8 0.0354 -4.6957 -0.6742 12 6 -0.1782 -4.2465 -2.9703 13 8 0.1517 -3.5347 -3.8961 14 7 -0.9646 -5.3184 -3.1915 15 6 -1.3306 -5.6884 -4.5610 16 6 -2.3166 -6.8578 -4.5271 17 6 -1.7718 -8.1517 -3.9794 18 1 -1.9191 -8.4023 -2.9392 19 6 -1.0904 -9.0182 -4.8075 20 7 -0.9936 -8.7597 -6.0932 21 14 -0.3047 -10.5597 -4.1030 22 1 -0.5561 -10.6194 -2.6407 23 1 -0.8927 -11.7573 -4.7552 24 1 1.1587 -10.5281 -4.3534 25 6 -3.7858 -6.5352 -4.2473 26 6 -3.3467 -6.9462 -5.6549 27 1 -0.3634 0.0045 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6582 2.1326 0.0006 31 1 4.1203 2.1327 -0.0096 32 1 5.3516 0.0000 -0.0110 33 1 4.1207 -2.1322 -0.0008 34 1 0.5837 -2.4218 0.6744 35 1 2.1006 -3.2989 0.3613 36 1 1.1894 -2.1993 -2.0753 37 1 -1.2883 -5.8450 -2.4439 38 1 -0.4359 -5.9834 -5.1090 39 1 -1.7953 -4.8356 -5.0559 40 1 -0.5777 -9.4037 -6.6876 41 1 -4.3584 -7.2589 -3.6670 42 1 -4.0500 -5.4898 -4.0878 43 1 -3.3222 -6.1710 -6.4208 44 1 -3.6300 -7.9402 -6.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340227135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:16 Heat of formation + Delta-G solvation = -46.749068 kcal Electronic energy + Delta-G solvation = -25413.980431 eV Core-core repulsion = 21716.919086 eV Total energy + Delta-G solvation = -3697.061344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73777 -40.54761 -39.56058 -38.46567 -36.39884 -34.98420 -33.96699 -33.61709 -32.36909 -29.02803 -28.21421 -27.51248 -26.91730 -24.34397 -23.01347 -22.89898 -21.74100 -21.44481 -21.18288 -19.61470 -18.13215 -17.85864 -17.28701 -17.21264 -16.70822 -16.56889 -16.40470 -16.21038 -15.72656 -15.52240 -15.14423 -14.85208 -14.55869 -14.41516 -14.05693 -13.85653 -13.75912 -13.59079 -13.47313 -13.10060 -12.95506 -12.92761 -12.86902 -12.77942 -12.35705 -12.01449 -11.92136 -11.88152 -11.42412 -10.97361 -10.82202 -10.46417 -10.37877 -10.13363 -9.97141 -9.80019 -9.56831 -8.11188 -6.24780 0.23695 0.36144 0.45717 1.39350 1.43813 1.44905 1.53429 2.15585 2.41418 2.64182 2.93957 3.16512 3.43170 3.58339 3.61430 3.86059 4.01003 4.15751 4.19791 4.32390 4.43500 4.51444 4.54887 4.62471 4.68690 4.68744 4.76744 4.82529 4.91664 4.92079 5.02359 5.06523 5.11493 5.28554 5.28620 5.34342 5.52464 5.53409 5.59481 5.66512 5.68520 5.77162 5.97065 6.07974 6.35501 6.43536 6.74488 6.82787 6.98807 7.45071 8.95569 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002658 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.432330 B =10532.982992 C =11152.970818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.110 4.110 5 C -0.136 4.136 6 C -0.105 4.105 7 C -0.125 4.125 8 C 0.162 3.838 9 N -0.683 5.683 10 C 0.515 3.485 11 O -0.539 6.539 12 C 0.496 3.504 13 O -0.557 6.557 14 N -0.669 5.669 15 C 0.175 3.825 16 C -0.003 4.003 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.028 3.972 20 N -0.904 5.904 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.286 1.286 25 C -0.180 4.180 26 C -0.146 4.146 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 19.998 13.029 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.153 4.153 6 C -0.124 4.124 7 C -0.125 4.125 8 C 0.040 3.960 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.416 6.416 12 C 0.277 3.723 13 O -0.436 6.436 14 N -0.318 5.318 15 C 0.052 3.948 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.173 4.173 20 N -0.541 5.541 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.213 1.213 25 C -0.217 4.217 26 C -0.184 4.184 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.252 0.748 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.892 19.876 12.871 24.662 hybrid contribution 0.464 -1.217 -0.163 1.313 sum 7.356 18.659 12.708 23.744 Atomic orbital electron populations 1.20924 0.90524 1.03298 1.03205 1.20037 0.96714 0.92728 0.97919 1.21331 0.94775 0.97844 1.00926 1.21549 0.94399 0.99065 0.97752 1.21433 1.01136 0.92171 1.00596 1.21313 0.93233 0.99444 0.98366 1.19663 0.94152 0.93449 1.05238 1.20345 0.98804 0.94473 0.82386 1.45817 1.53461 1.22087 1.12250 1.19992 0.79648 0.82475 0.88311 1.90758 1.56651 1.48600 1.45565 1.20334 0.80350 0.82116 0.89528 1.90702 1.57697 1.49857 1.45378 1.45799 1.47453 1.27493 1.11092 1.20829 0.97964 0.95436 0.80620 1.19074 0.86751 0.93441 1.01152 1.20690 1.34863 1.03005 0.95906 0.92386 1.25635 0.95977 1.00530 0.95188 1.70087 1.44355 1.36025 1.03629 0.85700 0.78094 0.80025 0.79014 1.19100 1.20663 1.21267 1.23024 0.99032 1.00368 0.99318 1.22396 1.05093 1.00031 0.90857 0.89971 0.90134 0.92324 0.84077 0.83688 0.84043 0.85114 0.89684 0.90178 0.74629 0.74826 0.94207 0.92618 0.93070 0.89898 0.89151 0.90650 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.26 71.23 0.66 -1.13 16 2 C -0.07 -1.20 5.88 -19.87 -0.12 -1.31 16 3 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 4 C -0.11 -1.38 10.05 22.27 0.22 -1.15 16 5 C -0.14 -1.85 10.05 22.27 0.22 -1.63 16 6 C -0.11 -1.71 9.67 22.27 0.22 -1.50 16 7 C -0.12 -2.22 5.25 -19.86 -0.10 -2.33 16 8 C 0.16 3.30 4.93 85.63 0.42 3.72 16 9 N -0.68 -16.88 4.86 -468.16 -2.27 -19.15 16 10 C 0.52 16.46 7.89 87.27 0.69 17.15 16 11 O -0.54 -19.30 16.50 -3.23 -0.05 -19.35 16 12 C 0.50 18.44 7.88 87.27 0.69 19.13 16 13 O -0.56 -22.45 16.47 -3.24 -0.05 -22.50 16 14 N -0.67 -26.63 5.46 -464.43 -2.54 -29.16 16 15 C 0.17 7.79 5.53 86.38 0.48 8.27 16 16 C 0.00 -0.16 1.47 -52.93 -0.08 -0.24 16 17 C -0.51 -26.36 8.59 25.60 0.22 -26.14 16 18 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 19 C 0.03 1.48 5.43 84.65 0.46 1.94 16 20 N -0.90 -50.47 12.65 21.45 0.27 -50.20 16 21 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 C -0.18 -7.21 9.96 30.62 0.30 -6.91 16 26 C -0.15 -6.54 9.14 30.62 0.28 -6.26 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 0.97 8.09 -2.39 -0.02 0.96 16 29 H 0.06 1.02 6.33 -2.39 -0.02 1.01 16 30 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.13 1.89 8.04 -2.91 -0.02 1.87 16 34 H 0.09 1.71 7.30 -2.39 -0.02 1.69 16 35 H 0.08 1.65 8.00 -2.38 -0.02 1.63 16 36 H 0.42 9.87 7.95 -92.71 -0.74 9.13 16 37 H 0.42 16.32 7.84 -92.71 -0.73 15.59 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 40 H 0.26 13.96 8.32 -92.70 -0.77 13.19 16 41 H 0.08 3.26 8.14 -2.38 -0.02 3.25 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -62.45 378.24 1.72 -60.73 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.44 Total: 34.62 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 4.78 Total: 0.03 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.54 Total: -98.51 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.11 Total: -41.85 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -62.45 1.72 -60.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340227135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.982 kcal (2) G-P(sol) polarization free energy of solvation -62.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds