Wall clock time and date at job start Tue Mar 31 2020 11:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36396 * 119.75287 * 2 1 4 4 C 1.47384 * 120.16971 * 359.97438 * 3 2 1 5 5 O 1.21517 * 119.99970 * 6.41091 * 4 3 2 6 6 O 1.34770 * 119.99859 * 186.40603 * 4 3 2 7 7 C 1.45199 * 117.00217 * 180.02562 * 6 4 3 8 8 C 1.52989 * 109.47226 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47100 * 299.99483 * 8 7 6 10 10 C 1.53001 * 109.47592 * 59.99915 * 8 7 6 11 11 C 1.53004 * 109.46969 * 180.02562 * 8 7 6 12 12 C 1.50704 * 109.46907 * 179.97438 * 11 8 7 13 13 H 1.07999 * 120.00421 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99879 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47305 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46957 * 120.00429 * 16 14 12 19 19 H 1.48502 * 109.47453 * 240.00223 * 16 14 12 20 20 C 1.46541 * 119.65760 * 180.02562 * 3 2 1 21 21 C 1.35518 * 119.03803 * 0.02562 * 20 3 2 22 22 C 1.41237 * 119.43456 * 359.97438 * 21 20 3 23 23 C 1.37904 * 132.95962 * 180.02562 * 22 21 20 24 24 N 1.33456 * 107.65682 * 179.77453 * 23 22 21 25 25 C 1.30735 * 109.94521 * 0.37429 * 24 23 22 26 26 N 1.35939 * 109.20202 * 359.62448 * 25 24 23 27 27 H 1.09003 * 109.46562 * 276.86890 * 1 2 3 28 28 H 1.08996 * 109.46990 * 36.86706 * 1 2 3 29 29 H 1.09000 * 109.47137 * 156.87170 * 1 2 3 30 30 H 1.08997 * 109.46734 * 300.00463 * 7 6 4 31 31 H 1.09003 * 109.47058 * 59.99495 * 7 6 4 32 32 H 1.09006 * 109.46718 * 60.00446 * 9 8 7 33 33 H 1.09002 * 109.47268 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.47340 * 300.00444 * 9 8 7 35 35 H 1.08997 * 109.46875 * 59.99523 * 10 8 7 36 36 H 1.09002 * 109.47204 * 179.97438 * 10 8 7 37 37 H 1.09004 * 109.46660 * 299.99806 * 10 8 7 38 38 H 1.08996 * 109.47176 * 299.99383 * 11 8 7 39 39 H 1.08998 * 109.47270 * 59.99679 * 11 8 7 40 40 H 0.97001 * 119.99252 * 179.97438 * 15 14 12 41 41 H 1.08003 * 120.48023 * 180.02562 * 20 3 2 42 42 H 1.08006 * 120.28015 * 179.97438 * 21 20 3 43 43 H 1.07994 * 126.16918 * 0.02562 * 23 22 21 44 44 H 1.07994 * 125.40204 * 179.88179 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1839 1.1842 0.0000 4 6 1.4452 2.4595 -0.0006 5 8 0.2357 2.4612 0.1165 6 8 2.1113 3.6239 -0.1308 7 6 1.3193 4.8409 -0.1223 8 6 2.2421 6.0509 -0.2807 9 6 3.2417 6.0850 0.8771 10 6 2.9997 5.9447 -1.6057 11 6 1.4076 7.3333 -0.2711 12 6 2.3166 8.5252 -0.4265 13 1 3.3827 8.3824 -0.5229 14 6 1.7870 9.7981 -0.4467 15 7 0.4886 9.9720 -0.3298 16 14 2.9137 11.2756 -0.6386 17 1 4.3208 10.8140 -0.7494 18 1 2.5413 12.0261 -1.8647 19 1 2.7747 12.1613 0.5453 20 6 3.6493 1.1817 -0.0006 21 6 4.3051 -0.0042 -0.0016 22 6 3.5646 -1.2069 -0.0016 23 6 3.9312 -2.5363 -0.0020 24 7 2.8129 -3.2646 0.0033 25 6 1.7685 -2.4782 -0.0010 26 7 2.1835 -1.1837 -0.0010 27 1 -0.3632 0.1229 1.0203 28 1 -0.3633 0.8221 -0.6165 29 1 -0.3633 -0.9451 -0.4037 30 1 0.6074 4.8168 -0.9473 31 1 0.7792 4.9163 0.8215 32 1 3.8363 5.1713 0.8707 33 1 3.8988 6.9473 0.7645 34 1 2.7020 6.1606 1.8210 35 1 2.2875 5.9204 -2.4305 36 1 3.6568 6.8070 -1.7187 37 1 3.5943 5.0311 -1.6120 38 1 0.6952 7.3094 -1.0957 39 1 0.8682 7.4088 0.6730 40 1 0.1161 10.8675 -0.3436 41 1 4.1987 2.1116 -0.0002 42 1 5.3849 -0.0294 -0.0025 43 1 4.9411 -2.9189 -0.0021 44 1 0.7392 -2.8051 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344426028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:26 Heat of formation + Delta-G solvation = -11.369249 kcal Electronic energy + Delta-G solvation = -25951.073985 eV Core-core repulsion = 22255.546825 eV Total energy + Delta-G solvation = -3695.527160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.14157 -40.48108 -37.97642 -36.94794 -35.59325 -34.27586 -32.39626 -31.93239 -29.29003 -28.09561 -27.25440 -26.47134 -26.46095 -24.44556 -23.02680 -22.89705 -21.60865 -20.98507 -18.68948 -18.38633 -17.11719 -16.84715 -16.61620 -16.39257 -16.17419 -16.00509 -15.28783 -14.58264 -14.46929 -14.05873 -13.96886 -13.76813 -13.42989 -13.36568 -13.06652 -12.98005 -12.47520 -12.39387 -12.10768 -11.91508 -11.80412 -11.33380 -11.02736 -10.98784 -10.85515 -10.67820 -10.66539 -10.51209 -10.39958 -10.29886 -10.21664 -9.81869 -9.60074 -9.28447 -8.99147 -8.41351 -7.88419 -6.05459 -4.06595 0.18279 0.70183 1.94568 2.23908 2.75123 2.83586 3.14420 3.27521 3.35803 3.38626 3.88606 4.20016 4.28119 4.38966 4.40683 4.47830 4.57186 5.00501 5.12304 5.13893 5.20697 5.30306 5.38858 5.43070 5.44038 5.59057 5.72670 5.75410 5.83297 5.98455 6.11340 6.11699 6.22582 6.30346 6.44549 6.51937 6.64988 6.68602 6.73436 7.04988 7.05413 7.07637 7.46860 7.55349 7.66559 7.73438 7.93094 8.34419 8.97917 9.56831 11.06197 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.002506 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.267770 B =11168.597144 C =11795.406975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.172 3.828 3 C -0.147 4.147 4 C 0.515 3.485 5 O -0.505 6.505 6 O -0.339 6.339 7 C 0.080 3.920 8 C -0.058 4.058 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.034 3.966 12 C -0.509 4.509 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.075 4.075 21 C -0.095 4.095 22 C 0.014 3.986 23 C -0.023 4.023 24 N -0.450 5.450 25 C 0.151 3.849 26 N -0.378 5.378 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.183 0.817 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -22.083 0.649 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.068 3.932 3 C -0.152 4.152 4 C 0.360 3.640 5 O -0.396 6.396 6 O -0.255 6.255 7 C 0.007 3.993 8 C -0.058 4.058 9 C -0.184 4.184 10 C -0.184 4.184 11 C -0.003 4.003 12 C -0.547 4.547 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.095 4.095 21 C -0.115 4.115 22 C -0.093 4.093 23 C -0.175 4.175 24 N -0.163 5.163 25 C -0.124 4.124 26 N -0.051 5.051 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.200 0.800 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.854 -22.828 0.691 23.162 hybrid contribution 0.341 1.827 -0.063 1.860 sum 4.195 -21.001 0.628 21.425 Atomic orbital electron populations 1.21433 0.86184 1.05028 1.05817 1.20364 0.95476 0.82953 0.94416 1.19365 0.94037 0.89731 1.12050 1.20340 0.85493 0.84602 0.73614 1.90801 1.14835 1.87845 1.46159 1.86543 1.41984 1.14753 1.82196 1.23600 0.93897 0.79638 1.02134 1.20824 0.95872 0.93052 0.96061 1.21725 0.98832 1.00715 0.97086 1.21723 0.99915 1.00691 0.96035 1.19138 0.94641 0.88984 0.97513 1.21177 0.93583 0.90447 1.49526 0.92005 1.25021 0.94957 0.99095 0.95488 1.69976 1.10804 1.22050 1.50621 0.86558 0.80998 0.82934 0.77648 1.19705 1.21097 1.21091 1.22236 0.91117 0.99260 0.96928 1.20434 1.00371 0.88709 1.01966 1.19839 0.82210 0.97306 1.09951 1.22594 0.98129 0.86963 1.09776 1.69973 0.97936 1.32968 1.15409 1.25143 1.00693 0.76227 1.10323 1.42968 1.07705 1.06463 1.47983 0.88444 0.86125 0.91120 0.91366 0.91341 0.94231 0.91483 0.93726 0.93741 0.91488 0.94205 0.96311 0.96305 0.93045 0.82768 0.82885 0.79971 0.76992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.55 36.00 0.31 -0.82 16 2 C 0.17 1.83 6.83 -81.25 -0.55 1.27 16 3 C -0.15 -1.73 5.98 -103.49 -0.62 -2.35 16 4 C 0.51 7.23 7.81 34.45 0.27 7.50 16 5 O -0.51 -7.75 13.01 -19.28 -0.25 -8.00 16 6 O -0.34 -5.13 8.27 -40.68 -0.34 -5.47 16 7 C 0.08 1.38 4.33 37.15 0.16 1.54 16 8 C -0.06 -1.10 0.61 -154.51 -0.09 -1.20 16 9 C -0.13 -2.26 8.08 37.16 0.30 -1.96 16 10 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 11 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 12 C -0.51 -13.33 7.65 -34.44 -0.26 -13.59 16 13 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 14 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.08 -0.76 9.84 -37.21 -0.37 -1.13 16 21 C -0.10 -0.84 10.09 -39.41 -0.40 -1.24 16 22 C 0.01 0.15 6.78 -84.01 -0.57 -0.42 16 23 C -0.02 -0.23 12.00 -16.97 -0.20 -0.43 16 24 N -0.45 -4.99 11.18 -13.78 -0.15 -5.15 16 25 C 0.15 1.43 12.09 -89.36 -1.08 0.35 16 26 N -0.38 -3.92 2.94 -57.73 -0.17 -4.09 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.12 1.26 5.78 -51.93 -0.30 0.96 16 29 H 0.07 0.44 7.15 -51.93 -0.37 0.07 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.15 1.41 7.78 -52.48 -0.41 1.00 16 42 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.21 1.22 7.55 -52.49 -0.40 0.82 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -31.02 361.71 -8.96 -39.98 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.20 Total: -1.04 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.02 Total: -12.32 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.41 Total: -34.51 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.59 Total: -13.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.02 -8.96 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344426028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.614 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds