Wall clock time and date at job start Tue Mar 31 2020 11:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36396 * 119.75287 * 2 1 4 4 C 1.47384 * 120.16971 * 359.97438 * 3 2 1 5 5 O 1.21517 * 119.99970 * 6.41091 * 4 3 2 6 6 O 1.34770 * 119.99859 * 186.40603 * 4 3 2 7 7 C 1.45199 * 117.00217 * 180.02562 * 6 4 3 8 8 C 1.52989 * 109.47226 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47100 * 299.99483 * 8 7 6 10 10 C 1.53001 * 109.47592 * 59.99915 * 8 7 6 11 11 C 1.53004 * 109.46969 * 180.02562 * 8 7 6 12 12 C 1.50704 * 109.46907 * 179.97438 * 11 8 7 13 13 H 1.07999 * 120.00421 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99879 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47305 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46957 * 120.00429 * 16 14 12 19 19 H 1.48502 * 109.47453 * 240.00223 * 16 14 12 20 20 C 1.46541 * 119.65760 * 180.02562 * 3 2 1 21 21 C 1.35518 * 119.03803 * 0.02562 * 20 3 2 22 22 C 1.41237 * 119.43456 * 359.97438 * 21 20 3 23 23 C 1.37904 * 132.95962 * 180.02562 * 22 21 20 24 24 N 1.33456 * 107.65682 * 179.77453 * 23 22 21 25 25 C 1.30735 * 109.94521 * 0.37429 * 24 23 22 26 26 N 1.35939 * 109.20202 * 359.62448 * 25 24 23 27 27 H 1.09003 * 109.46562 * 276.86890 * 1 2 3 28 28 H 1.08996 * 109.46990 * 36.86706 * 1 2 3 29 29 H 1.09000 * 109.47137 * 156.87170 * 1 2 3 30 30 H 1.08997 * 109.46734 * 300.00463 * 7 6 4 31 31 H 1.09003 * 109.47058 * 59.99495 * 7 6 4 32 32 H 1.09006 * 109.46718 * 60.00446 * 9 8 7 33 33 H 1.09002 * 109.47268 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.47340 * 300.00444 * 9 8 7 35 35 H 1.08997 * 109.46875 * 59.99523 * 10 8 7 36 36 H 1.09002 * 109.47204 * 179.97438 * 10 8 7 37 37 H 1.09004 * 109.46660 * 299.99806 * 10 8 7 38 38 H 1.08996 * 109.47176 * 299.99383 * 11 8 7 39 39 H 1.08998 * 109.47270 * 59.99679 * 11 8 7 40 40 H 0.97001 * 119.99252 * 179.97438 * 15 14 12 41 41 H 1.08003 * 120.48023 * 180.02562 * 20 3 2 42 42 H 1.08006 * 120.28015 * 179.97438 * 21 20 3 43 43 H 1.07994 * 126.16918 * 0.02562 * 23 22 21 44 44 H 1.07994 * 125.40204 * 179.88179 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1839 1.1842 0.0000 4 6 1.4452 2.4595 -0.0006 5 8 0.2357 2.4612 0.1165 6 8 2.1113 3.6239 -0.1308 7 6 1.3193 4.8409 -0.1223 8 6 2.2421 6.0509 -0.2807 9 6 3.2417 6.0850 0.8771 10 6 2.9997 5.9447 -1.6057 11 6 1.4076 7.3333 -0.2711 12 6 2.3166 8.5252 -0.4265 13 1 3.3827 8.3824 -0.5229 14 6 1.7870 9.7981 -0.4467 15 7 0.4886 9.9720 -0.3298 16 14 2.9137 11.2756 -0.6386 17 1 4.3208 10.8140 -0.7494 18 1 2.5413 12.0261 -1.8647 19 1 2.7747 12.1613 0.5453 20 6 3.6493 1.1817 -0.0006 21 6 4.3051 -0.0042 -0.0016 22 6 3.5646 -1.2069 -0.0016 23 6 3.9312 -2.5363 -0.0020 24 7 2.8129 -3.2646 0.0033 25 6 1.7685 -2.4782 -0.0010 26 7 2.1835 -1.1837 -0.0010 27 1 -0.3632 0.1229 1.0203 28 1 -0.3633 0.8221 -0.6165 29 1 -0.3633 -0.9451 -0.4037 30 1 0.6074 4.8168 -0.9473 31 1 0.7792 4.9163 0.8215 32 1 3.8363 5.1713 0.8707 33 1 3.8988 6.9473 0.7645 34 1 2.7020 6.1606 1.8210 35 1 2.2875 5.9204 -2.4305 36 1 3.6568 6.8070 -1.7187 37 1 3.5943 5.0311 -1.6120 38 1 0.6952 7.3094 -1.0957 39 1 0.8682 7.4088 0.6730 40 1 0.1161 10.8675 -0.3436 41 1 4.1987 2.1116 -0.0002 42 1 5.3849 -0.0294 -0.0025 43 1 4.9411 -2.9189 -0.0021 44 1 0.7392 -2.8051 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344426028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:23 Heat of formation + Delta-G solvation = -25.297488 kcal Electronic energy + Delta-G solvation = -25951.677959 eV Core-core repulsion = 22255.546825 eV Total energy + Delta-G solvation = -3696.131134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = -0.89 seconds Orbital eigenvalues (eV) -43.88074 -41.61937 -39.12847 -38.04561 -36.95620 -35.02883 -34.39141 -32.75004 -30.07173 -29.33270 -28.72321 -27.93966 -27.77189 -25.58847 -24.63240 -23.68895 -22.45404 -21.93149 -19.95402 -19.53732 -18.37197 -18.06195 -17.85438 -17.63426 -17.11912 -16.95896 -16.49803 -16.05670 -15.42473 -15.32740 -15.01287 -14.74991 -14.57993 -14.43678 -14.19542 -13.95634 -13.90824 -13.76400 -13.63168 -12.96994 -12.70676 -12.69150 -12.66684 -12.52707 -12.31091 -12.23711 -11.93596 -11.84530 -11.70656 -11.46668 -11.39529 -11.33423 -11.02280 -10.87841 -10.52586 -10.41685 -8.60193 -8.15401 -6.22494 -0.64867 -0.01829 1.08886 1.28891 1.42089 1.43699 1.55243 1.80829 1.98510 2.34952 2.44512 3.16172 3.19674 3.43858 3.50565 3.61739 3.74898 3.86838 3.93114 3.95679 4.23909 4.24663 4.39374 4.48074 4.52320 4.55324 4.61418 4.71894 4.75016 4.91653 5.00969 5.03685 5.11746 5.15158 5.15451 5.41799 5.42310 5.44327 5.48111 5.52044 5.54368 5.55786 5.76202 5.88633 5.99346 6.28923 6.59640 6.74184 6.91733 7.45120 8.97352 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.002506 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.267770 B =11168.597144 C =11795.406975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 C -0.165 4.165 4 C 0.514 3.486 5 O -0.523 6.523 6 O -0.335 6.335 7 C 0.091 3.909 8 C -0.054 4.054 9 C -0.120 4.120 10 C -0.120 4.120 11 C 0.039 3.961 12 C -0.512 4.512 13 H 0.072 0.928 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.958 3.042 17 H -0.258 1.258 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.091 4.091 21 C -0.082 4.082 22 C -0.008 4.008 23 C -0.024 4.024 24 N -0.478 5.478 25 C 0.156 3.844 26 N -0.385 5.385 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.067 0.933 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.260 0.740 41 H 0.163 0.837 42 H 0.185 0.815 43 H 0.207 0.793 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.482 -23.816 0.545 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.169 4.169 4 C 0.360 3.640 5 O -0.415 6.415 6 O -0.251 6.251 7 C 0.018 3.982 8 C -0.054 4.054 9 C -0.177 4.177 10 C -0.177 4.177 11 C 0.002 3.998 12 C -0.550 4.550 13 H 0.090 0.910 14 C -0.201 4.201 15 N -0.578 5.578 16 Si 0.784 3.216 17 H -0.181 1.181 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.174 4.174 24 N -0.191 5.191 25 C -0.119 4.119 26 N -0.059 5.059 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.069 0.931 41 H 0.180 0.820 42 H 0.202 0.798 43 H 0.223 0.777 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.881 -24.582 0.586 25.283 hybrid contribution -0.322 2.179 -0.024 2.203 sum 5.559 -22.403 0.562 23.089 Atomic orbital electron populations 1.21423 0.85227 1.05880 1.05739 1.20497 0.96124 0.82853 0.93253 1.19303 0.94966 0.88710 1.13953 1.20743 0.85486 0.84796 0.72924 1.90803 1.15684 1.88002 1.47051 1.86507 1.41443 1.14487 1.82645 1.23190 0.93296 0.80265 1.01498 1.20615 0.95735 0.91433 0.97586 1.21658 0.98374 1.01640 0.96072 1.21655 0.99636 1.01544 0.94896 1.19000 0.94412 0.91616 0.94806 1.21567 0.94271 0.91079 1.48057 0.91024 1.25922 0.96306 1.02366 0.95504 1.70117 1.12777 1.22650 1.52304 0.85493 0.79628 0.79162 0.77356 1.18149 1.21005 1.20992 1.22318 0.90259 1.00190 0.98349 1.20770 1.01785 0.87630 0.99966 1.20212 0.82432 0.98019 1.10783 1.23084 0.98987 0.86835 1.08544 1.70015 0.98772 1.33731 1.16621 1.25860 1.01825 0.75741 1.08476 1.43095 1.07966 1.06540 1.48293 0.88198 0.87888 0.88257 0.92071 0.92077 0.91295 0.92648 0.94308 0.94327 0.92642 0.91362 0.99085 0.99078 0.93115 0.81988 0.79806 0.77657 0.73943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.55 71.24 0.61 -1.45 16 2 C 0.18 3.50 6.83 41.43 0.28 3.79 16 3 C -0.16 -3.69 5.98 -19.13 -0.11 -3.80 16 4 C 0.51 14.20 7.81 70.23 0.55 14.75 16 5 O -0.52 -16.15 13.01 19.78 0.26 -15.89 16 6 O -0.34 -9.85 8.27 -56.81 -0.47 -10.32 16 7 C 0.09 3.15 4.33 71.98 0.31 3.47 16 8 C -0.05 -2.04 0.61 -52.18 -0.03 -2.07 16 9 C -0.12 -4.19 8.08 71.98 0.58 -3.60 16 10 C -0.12 -4.20 8.08 71.98 0.58 -3.61 16 11 C 0.04 1.93 4.04 29.85 0.12 2.05 16 12 C -0.51 -27.10 7.65 25.60 0.20 -26.90 16 13 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 14 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 15 N -0.94 -55.98 13.29 21.45 0.28 -55.69 16 16 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 C -0.09 -1.66 9.84 23.81 0.23 -1.43 16 21 C -0.08 -1.24 10.09 22.38 0.23 -1.02 16 22 C -0.01 -0.14 6.78 38.81 0.26 0.12 16 23 C -0.02 -0.41 12.00 84.37 1.01 0.60 16 24 N -0.48 -9.58 11.18 -197.51 -2.21 -11.79 16 25 C 0.16 2.57 12.09 179.91 2.17 4.75 16 26 N -0.38 -7.21 2.94 -336.57 -0.99 -8.20 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 2.12 5.78 -2.39 -0.01 2.10 16 29 H 0.10 0.99 7.15 -2.39 -0.02 0.97 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.99 7.68 -2.38 -0.02 1.97 16 33 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 37 H 0.07 1.99 7.68 -2.39 -0.02 1.97 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.16 2.60 7.78 -2.91 -0.02 2.58 16 42 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.24 2.03 7.55 -2.91 -0.02 2.01 16 Total: -1.00 -67.86 361.71 7.37 -60.50 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.01 Total: 10.38 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 7.46 Total: -14.13 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -2.91 Total: -75.67 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.21 Total: -26.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.86 7.37 -60.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344426028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.202 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.89 seconds