Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48503 * 109.47588 * 269.99720 * 3 2 1 5 5 H 1.48497 * 109.47176 * 30.00227 * 3 2 1 6 6 H 1.48502 * 109.47029 * 149.99907 * 3 2 1 7 7 C 1.37867 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00338 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47485 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47295 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54175 * 68.37184 * 12 11 10 14 14 O 1.42103 * 110.54007 * 291.62685 * 12 11 10 15 15 N 1.65594 * 104.45346 * 180.02562 * 12 11 10 16 16 C 1.47228 * 126.70048 * 89.97572 * 15 12 11 17 17 C 1.53822 * 106.32120 * 148.82976 * 16 15 12 18 18 H 1.09004 * 111.39844 * 257.01347 * 17 16 15 19 19 C 1.53600 * 109.42210 * 133.42917 * 17 16 15 20 20 C 1.53977 * 105.97671 * 264.57610 * 19 17 16 21 21 C 1.53978 * 104.88996 * 330.52694 * 20 19 17 22 22 C 1.53601 * 105.97299 * 29.47434 * 21 20 19 23 23 C 1.53001 * 111.90062 * 219.38658 * 22 21 20 24 24 N 1.46893 * 109.47571 * 299.74329 * 23 22 21 25 25 C 1.47233 * 126.69892 * 269.97389 * 15 12 11 26 26 H 0.97005 * 119.99767 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47354 * 59.99388 * 9 7 2 28 28 H 1.09004 * 109.47030 * 300.00130 * 9 7 2 29 29 H 1.08999 * 109.46882 * 59.99868 * 10 9 7 30 30 H 1.08994 * 109.46821 * 299.99781 * 10 9 7 31 31 H 1.08999 * 109.47300 * 60.00218 * 11 10 9 32 32 H 1.09004 * 109.47141 * 299.99689 * 11 10 9 33 33 H 1.08992 * 110.08977 * 29.61565 * 16 15 12 34 34 H 1.09000 * 110.08445 * 268.03870 * 16 15 12 35 35 H 1.09000 * 110.15412 * 145.45250 * 19 17 16 36 36 H 1.08997 * 110.15268 * 23.69995 * 19 17 16 37 37 H 1.09005 * 110.35373 * 89.38048 * 20 19 17 38 38 H 1.09004 * 110.35680 * 211.67399 * 20 19 17 39 39 H 1.09000 * 110.15130 * 148.59508 * 21 20 19 40 40 H 1.08994 * 110.14958 * 270.34284 * 21 20 19 41 41 H 1.09008 * 109.47395 * 59.74712 * 23 22 21 42 42 H 1.09002 * 109.47215 * 179.73926 * 23 22 21 43 43 H 1.00901 * 111.00094 * 56.04532 * 24 23 22 44 44 H 1.00899 * 111.00671 * 180.02562 * 24 23 22 45 45 H 1.08999 * 110.08400 * 330.38955 * 25 15 12 46 46 H 1.09002 * 110.08558 * 91.89808 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 16 6.1563 -4.3466 -0.0010 13 8 5.8601 -4.9796 -1.2384 14 8 5.8602 -4.9808 1.2357 15 7 7.8059 -4.2017 -0.0003 16 6 8.6819 -4.1250 1.1805 17 6 10.0152 -4.7747 0.7726 18 1 10.1085 -5.7811 1.1810 19 6 11.1787 -3.8783 1.2217 20 6 11.5422 -3.0125 0.0014 21 6 11.1798 -3.8777 -1.2196 22 6 10.0158 -4.7744 -0.7718 23 6 10.1399 -6.1928 -1.3317 24 7 10.1361 -6.1419 -2.7998 25 6 8.6829 -4.1244 -1.1804 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6807 0.8904 28 1 3.8752 -0.6795 -0.8895 29 1 3.6585 -3.1501 -0.8903 30 1 3.6579 -3.1504 0.8896 31 1 5.9149 -2.1227 0.8899 32 1 5.9148 -2.1225 -0.8901 33 1 8.2380 -4.6719 2.0122 34 1 8.8431 -3.0838 1.4600 35 1 12.0319 -4.4895 1.5158 36 1 10.8660 -3.2447 2.0517 37 1 10.9573 -2.0927 0.0014 38 1 12.6082 -2.7849 0.0019 39 1 10.8676 -3.2439 -2.0497 40 1 12.0331 -4.4889 -1.5133 41 1 11.0722 -6.6397 -0.9861 42 1 9.2990 -6.7945 -0.9868 43 1 10.8678 -5.5376 -3.1425 44 1 10.2166 -7.0673 -3.1939 45 1 8.2395 -4.6710 -2.0127 46 1 8.8434 -3.0831 -1.4600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = -90.340520 kcal Electronic energy + Delta-G solvation = -25474.723483 eV Core-core repulsion = 21911.215823 eV Total energy + Delta-G solvation = -3563.507660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64192 -36.91066 -35.75551 -35.18613 -34.77895 -34.59375 -32.19396 -30.58697 -29.34185 -28.33221 -26.14313 -24.94707 -23.56627 -22.75276 -20.65265 -20.39614 -19.16338 -18.83284 -17.52026 -16.90045 -16.54440 -16.15241 -15.93245 -15.51927 -15.32153 -14.71679 -14.65014 -14.18927 -14.16165 -13.67062 -13.45834 -13.39467 -12.87716 -12.77829 -12.34429 -12.30387 -12.10617 -11.93662 -11.89395 -11.81761 -11.55580 -11.47698 -11.20341 -11.03124 -10.97450 -10.95534 -10.92916 -10.85129 -10.67773 -10.07545 -9.86044 -9.69133 -9.26519 -9.03290 -8.93359 -8.57469 -6.07142 -4.06305 0.39535 2.77440 3.27680 3.35027 3.37378 3.84878 3.99085 4.06842 4.16845 4.32845 4.41580 4.49323 4.79410 4.82093 4.85199 4.97383 5.02630 5.04542 5.14228 5.18827 5.23504 5.26734 5.30499 5.42003 5.47619 5.52609 5.64665 5.70497 5.72161 5.78382 5.83588 5.87538 5.96763 5.98991 6.10690 6.15270 6.29257 6.36367 6.69285 6.80029 7.11654 7.14448 7.28459 7.72486 8.49203 8.97376 9.54052 11.06197 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.003170 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.393393 B = 8831.709378 C = 9279.097700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.617 3.383 13 O -0.952 6.952 14 O -0.958 6.958 15 N -1.016 6.016 16 C 0.122 3.878 17 C -0.093 4.093 18 H 0.087 0.913 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.063 4.063 23 C 0.079 3.921 24 N -0.848 5.848 25 C 0.131 3.869 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.339 0.661 44 H 0.343 0.657 45 H 0.099 0.901 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.086 -8.951 -0.765 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.715 3.285 13 O -0.942 6.942 14 O -0.948 6.948 15 N -0.852 5.852 16 C -0.004 4.004 17 C -0.113 4.113 18 H 0.105 0.895 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.149 4.149 22 C -0.066 4.066 23 C -0.052 4.052 24 N -0.378 5.378 25 C 0.005 3.995 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.118 0.882 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 27.607 -9.372 -0.684 29.163 hybrid contribution 1.449 1.293 0.097 1.944 sum 29.056 -8.079 -0.587 30.164 Atomic orbital electron populations 1.69915 1.06280 1.26963 1.50773 1.25022 0.94760 0.99165 0.94469 0.86773 0.80315 0.83615 0.78544 1.20199 1.21262 1.19077 1.21140 0.89261 0.94789 1.51265 0.90714 1.19527 0.97308 0.90730 0.96702 1.21314 0.86710 1.02933 1.02754 1.30666 1.09284 1.23739 1.11036 1.04898 0.71476 0.77977 0.74188 1.93578 1.82353 1.73081 1.45200 1.93558 1.82512 1.73196 1.45548 1.58902 1.23025 1.90113 1.13201 1.21916 0.89578 1.00548 0.88341 1.22402 0.94639 0.99870 0.94437 0.89495 1.22135 0.97379 0.97729 0.98172 1.22146 1.01051 0.98624 0.94236 1.22129 0.96816 0.97571 0.98372 1.21754 0.95429 0.95006 0.94365 1.21758 1.00119 0.95286 0.88043 1.58618 1.55567 1.16783 1.06848 1.21906 0.89027 1.00142 0.88390 0.92632 0.96212 0.96606 0.90996 0.91019 0.85557 0.85489 0.89818 0.91565 0.91595 0.91012 0.91406 0.91552 0.90828 0.91921 0.95324 0.90609 0.84815 0.84412 0.88230 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.53 -15.21 9.66 -34.45 -0.33 -15.55 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 10 C -0.10 -1.97 5.16 -26.73 -0.14 -2.11 16 11 C -0.62 -9.43 6.18 37.16 0.23 -9.20 16 12 S 2.62 40.18 5.69 -107.50 -0.61 39.57 16 13 O -0.95 -17.36 17.28 -57.54 -0.99 -18.35 16 14 O -0.96 -17.17 17.28 -57.54 -0.99 -18.16 16 15 N -1.02 -12.04 3.62 -112.34 -0.41 -12.44 16 16 C 0.12 1.18 6.61 -3.22 -0.02 1.15 16 17 C -0.09 -0.72 3.49 -89.12 -0.31 -1.03 16 18 H 0.09 0.64 7.86 -51.93 -0.41 0.24 16 19 C -0.12 -0.70 6.18 -25.91 -0.16 -0.86 16 20 C -0.12 -0.72 6.84 -25.71 -0.18 -0.90 16 21 C -0.11 -0.68 4.88 -25.91 -0.13 -0.81 16 22 C -0.06 -0.51 0.78 -153.01 -0.12 -0.63 16 23 C 0.08 0.62 5.58 -3.83 -0.02 0.60 16 24 N -0.85 -6.16 8.97 -10.37 -0.09 -6.26 16 25 C 0.13 1.36 6.13 -3.22 -0.02 1.34 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 28 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.08 0.85 7.59 -51.93 -0.39 0.46 16 34 H 0.07 0.54 7.42 -51.93 -0.39 0.16 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.41 7.50 -51.93 -0.39 0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.45 7.50 -51.93 -0.39 0.06 16 40 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 41 H 0.03 0.19 8.14 -51.92 -0.42 -0.23 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.34 1.93 7.89 -39.29 -0.31 1.62 16 44 H 0.34 2.04 9.08 -39.29 -0.36 1.68 16 45 H 0.10 1.22 6.82 -51.93 -0.35 0.87 16 46 H 0.06 0.57 7.42 -51.93 -0.39 0.18 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -35.56 367.10 -10.80 -46.36 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.93 Total: 0.29 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -1.41 Total: -26.31 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.27 Total: -45.91 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.99 Total: -36.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 40.18 SS G_CDS: -0.61 Total: 39.57 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.56 -10.80 -46.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.985 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds