Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48503 * 109.47588 * 269.99720 * 3 2 1 5 5 H 1.48497 * 109.47176 * 30.00227 * 3 2 1 6 6 H 1.48502 * 109.47029 * 149.99907 * 3 2 1 7 7 C 1.37867 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00338 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47485 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47295 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54175 * 68.37184 * 12 11 10 14 14 O 1.42103 * 110.54007 * 291.62685 * 12 11 10 15 15 N 1.65594 * 104.45346 * 180.02562 * 12 11 10 16 16 C 1.47228 * 126.70048 * 89.97572 * 15 12 11 17 17 C 1.53822 * 106.32120 * 148.82976 * 16 15 12 18 18 H 1.09004 * 111.39844 * 257.01347 * 17 16 15 19 19 C 1.53600 * 109.42210 * 133.42917 * 17 16 15 20 20 C 1.53977 * 105.97671 * 264.57610 * 19 17 16 21 21 C 1.53978 * 104.88996 * 330.52694 * 20 19 17 22 22 C 1.53601 * 105.97299 * 29.47434 * 21 20 19 23 23 C 1.53001 * 111.90062 * 219.38658 * 22 21 20 24 24 N 1.46893 * 109.47571 * 299.74329 * 23 22 21 25 25 C 1.47233 * 126.69892 * 269.97389 * 15 12 11 26 26 H 0.97005 * 119.99767 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47354 * 59.99388 * 9 7 2 28 28 H 1.09004 * 109.47030 * 300.00130 * 9 7 2 29 29 H 1.08999 * 109.46882 * 59.99868 * 10 9 7 30 30 H 1.08994 * 109.46821 * 299.99781 * 10 9 7 31 31 H 1.08999 * 109.47300 * 60.00218 * 11 10 9 32 32 H 1.09004 * 109.47141 * 299.99689 * 11 10 9 33 33 H 1.08992 * 110.08977 * 29.61565 * 16 15 12 34 34 H 1.09000 * 110.08445 * 268.03870 * 16 15 12 35 35 H 1.09000 * 110.15412 * 145.45250 * 19 17 16 36 36 H 1.08997 * 110.15268 * 23.69995 * 19 17 16 37 37 H 1.09005 * 110.35373 * 89.38048 * 20 19 17 38 38 H 1.09004 * 110.35680 * 211.67399 * 20 19 17 39 39 H 1.09000 * 110.15130 * 148.59508 * 21 20 19 40 40 H 1.08994 * 110.14958 * 270.34284 * 21 20 19 41 41 H 1.09008 * 109.47395 * 59.74712 * 23 22 21 42 42 H 1.09002 * 109.47215 * 179.73926 * 23 22 21 43 43 H 1.00901 * 111.00094 * 56.04532 * 24 23 22 44 44 H 1.00899 * 111.00671 * 180.02562 * 24 23 22 45 45 H 1.08999 * 110.08400 * 330.38955 * 25 15 12 46 46 H 1.09002 * 110.08558 * 91.89808 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 16 6.1563 -4.3466 -0.0010 13 8 5.8601 -4.9796 -1.2384 14 8 5.8602 -4.9808 1.2357 15 7 7.8059 -4.2017 -0.0003 16 6 8.6819 -4.1250 1.1805 17 6 10.0152 -4.7747 0.7726 18 1 10.1085 -5.7811 1.1810 19 6 11.1787 -3.8783 1.2217 20 6 11.5422 -3.0125 0.0014 21 6 11.1798 -3.8777 -1.2196 22 6 10.0158 -4.7744 -0.7718 23 6 10.1399 -6.1928 -1.3317 24 7 10.1361 -6.1419 -2.7998 25 6 8.6829 -4.1244 -1.1804 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6807 0.8904 28 1 3.8752 -0.6795 -0.8895 29 1 3.6585 -3.1501 -0.8903 30 1 3.6579 -3.1504 0.8896 31 1 5.9149 -2.1227 0.8899 32 1 5.9148 -2.1225 -0.8901 33 1 8.2380 -4.6719 2.0122 34 1 8.8431 -3.0838 1.4600 35 1 12.0319 -4.4895 1.5158 36 1 10.8660 -3.2447 2.0517 37 1 10.9573 -2.0927 0.0014 38 1 12.6082 -2.7849 0.0019 39 1 10.8676 -3.2439 -2.0497 40 1 12.0331 -4.4889 -1.5133 41 1 11.0722 -6.6397 -0.9861 42 1 9.2990 -6.7945 -0.9868 43 1 10.8678 -5.5376 -3.1425 44 1 10.2166 -7.0673 -3.1939 45 1 8.2395 -4.6710 -2.0127 46 1 8.8434 -3.0831 -1.4600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -117.653094 kcal Electronic energy + Delta-G solvation = -25475.907845 eV Core-core repulsion = 21911.215823 eV Total energy + Delta-G solvation = -3564.692022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27449 -38.24916 -37.09446 -36.54199 -35.92950 -35.15186 -34.27084 -31.19582 -30.22691 -29.91365 -26.76309 -25.78328 -25.26454 -23.46573 -22.17659 -21.15551 -19.98873 -19.79712 -19.01126 -18.58652 -17.37910 -17.22493 -17.08411 -16.37592 -16.21816 -15.92843 -15.90558 -15.18955 -15.14137 -14.90801 -14.38016 -14.28771 -14.05777 -14.00009 -13.69790 -13.48102 -13.27476 -13.26027 -13.17726 -12.89862 -12.83461 -12.71831 -12.58783 -11.92148 -11.86604 -11.82048 -11.67814 -11.64148 -11.55547 -11.45757 -11.43135 -11.32333 -11.13828 -10.79061 -9.95545 -9.51803 -8.31355 -6.37711 -0.83335 1.35780 1.38526 1.50241 1.67801 2.35329 2.78655 3.00734 3.03611 3.40494 3.44487 3.61167 3.67691 3.85922 3.97610 4.22229 4.24084 4.28867 4.30728 4.41348 4.50913 4.55783 4.58612 4.64805 4.73128 4.75468 4.79175 4.83245 4.91543 5.02881 5.08172 5.14575 5.20084 5.22903 5.29847 5.30463 5.32761 5.39535 5.42776 5.54146 5.58129 5.60332 6.23419 6.28879 6.67078 6.70216 7.27006 8.85736 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.003170 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.393393 B = 8831.709378 C = 9279.097700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.104 4.104 11 C -0.607 4.607 12 S 2.633 3.367 13 O -0.987 6.987 14 O -0.989 6.989 15 N -1.013 6.013 16 C 0.112 3.888 17 C -0.092 4.092 18 H 0.087 0.913 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.106 4.106 22 C -0.061 4.061 23 C 0.080 3.920 24 N -0.859 5.859 25 C 0.124 3.876 26 H 0.268 0.732 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.349 0.651 44 H 0.349 0.651 45 H 0.077 0.923 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.070 -7.064 -0.630 33.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.047 0.953 9 C -0.042 4.042 10 C -0.143 4.143 11 C -0.739 4.739 12 S 2.732 3.268 13 O -0.978 6.978 14 O -0.979 6.979 15 N -0.851 5.851 16 C -0.013 4.013 17 C -0.113 4.113 18 H 0.105 0.895 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.064 4.064 23 C -0.051 4.051 24 N -0.391 5.391 25 C -0.001 4.001 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 31.604 -7.513 -0.552 32.490 hybrid contribution 0.165 0.595 0.042 0.619 sum 31.769 -6.917 -0.510 32.518 Atomic orbital electron populations 1.70087 1.08528 1.28375 1.52255 1.26121 0.95724 1.03931 0.93793 0.85575 0.79655 0.77495 0.79436 1.18878 1.20951 1.16219 1.21546 0.92302 0.93342 1.51188 0.95252 1.19492 0.93750 0.93245 0.97723 1.21190 0.90412 1.00655 1.02066 1.30556 1.05411 1.24231 1.13677 1.04078 0.72257 0.77768 0.72727 1.93529 1.83558 1.74156 1.46515 1.93513 1.83640 1.74167 1.46620 1.58548 1.21793 1.89917 1.14825 1.22222 0.89871 1.02011 0.87161 1.22432 0.94313 1.00282 0.94228 0.89472 1.22124 0.96791 0.97581 0.98445 1.22156 1.01815 0.98256 0.93673 1.22104 0.96231 0.97387 0.98641 1.21774 0.94845 0.95161 0.94576 1.21690 0.99812 0.95109 0.88465 1.58587 1.56304 1.17564 1.06627 1.22118 0.89640 1.01183 0.87158 0.92362 0.94900 0.95093 0.92009 0.91911 0.82858 0.83002 0.90787 0.89428 0.90516 0.90459 0.91650 0.90307 0.90650 0.90653 0.93692 0.93166 0.83666 0.83753 0.90463 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.44 0.30 -60.46 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.96 43.68 27.47 68.60 1.88 45.56 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 7 C -0.55 -32.27 9.66 25.60 0.25 -32.02 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C 0.00 -0.17 4.04 29.85 0.12 -0.04 16 10 C -0.10 -4.17 5.16 30.59 0.16 -4.01 16 11 C -0.61 -17.37 6.18 71.98 0.44 -16.92 16 12 S 2.63 80.10 5.69 -56.49 -0.32 79.78 16 13 O -0.99 -36.70 17.28 -127.65 -2.21 -38.90 16 14 O -0.99 -35.81 17.28 -127.65 -2.21 -38.02 16 15 N -1.01 -22.65 3.62 -509.35 -1.85 -24.49 16 16 C 0.11 1.94 6.61 86.52 0.57 2.51 16 17 C -0.09 -1.21 3.49 -9.82 -0.03 -1.25 16 18 H 0.09 1.15 7.86 -2.38 -0.02 1.13 16 19 C -0.11 -0.96 6.18 31.13 0.19 -0.77 16 20 C -0.12 -0.97 6.84 31.25 0.21 -0.76 16 21 C -0.11 -0.96 4.88 31.13 0.15 -0.81 16 22 C -0.06 -0.85 0.78 -51.21 -0.04 -0.89 16 23 C 0.08 1.16 5.58 86.30 0.48 1.65 16 24 N -0.86 -11.50 8.97 -186.72 -1.68 -13.17 16 25 C 0.12 2.38 6.13 86.51 0.53 2.91 16 26 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 27 H 0.03 1.44 7.20 -2.39 -0.02 1.43 16 28 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 29 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.15 3.60 8.14 -2.39 -0.02 3.59 16 33 H 0.07 1.42 7.59 -2.39 -0.02 1.41 16 34 H 0.09 1.15 7.42 -2.39 -0.02 1.13 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.61 7.50 -2.39 -0.02 0.59 16 37 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 0.69 7.50 -2.39 -0.02 0.67 16 40 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 41 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.35 3.31 7.89 -89.69 -0.71 2.61 16 44 H 0.35 3.86 9.08 -89.69 -0.81 3.05 16 45 H 0.08 1.86 6.82 -2.39 -0.02 1.84 16 46 H 0.08 1.25 7.42 -2.39 -0.02 1.23 16 Total: -1.00 -79.39 367.10 -3.17 -82.56 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.60 Total: 17.03 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 3.50 Total: -49.88 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.22 Total: -98.13 kcal Atomic # 8 Polarization: -72.51 SS G_CDS: -4.41 Total: -76.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 16 Polarization: 80.10 SS G_CDS: -0.32 Total: 79.78 kcal Total: -79.39 -3.17 -82.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.091 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds