Wall clock time and date at job start Tue Mar 31 2020 11:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00265 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46953 * 300.00578 * 3 2 1 6 6 H 1.48504 * 109.46731 * 60.00449 * 3 2 1 7 7 C 1.38812 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 163.06050 * 7 2 1 9 9 N 1.36931 * 120.00262 * 343.06320 * 7 2 1 10 10 C 1.46925 * 120.63124 * 331.83605 * 9 7 2 11 11 C 1.53190 * 108.78132 * 233.63355 * 10 9 7 12 12 C 1.53035 * 109.31018 * 305.36640 * 11 10 9 13 13 N 1.46507 * 109.45897 * 181.38306 * 12 11 10 14 14 C 1.38578 * 120.00004 * 154.99858 * 13 12 11 15 15 C 1.39462 * 120.49454 * 359.97438 * 14 13 12 16 16 C 1.39183 * 118.22809 * 179.97438 * 15 14 13 17 17 C 1.48424 * 120.50973 * 180.02562 * 16 15 14 18 18 N 1.34065 * 126.67210 * 359.97438 * 17 16 15 19 19 N 1.28987 * 107.26522 * 179.97438 * 18 17 16 20 20 N 1.28736 * 108.94793 * 0.02562 * 19 18 17 21 21 H 0.97000 * 125.33438 * 179.97438 * 20 19 18 22 22 N 1.28867 * 109.32013 * 359.74532 * 20 19 18 23 23 N 1.33363 * 118.98978 * 0.02562 * 16 15 14 24 24 C 1.31632 * 120.88371 * 359.97438 * 23 16 15 25 25 N 1.31801 * 121.97034 * 0.25579 * 24 23 16 26 26 C 1.53036 * 109.54141 * 61.36393 * 12 11 10 27 27 C 1.46924 * 120.63597 * 151.86373 * 9 7 2 28 28 H 0.97003 * 119.99918 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58753 * 113.84153 * 10 9 7 30 30 H 1.09002 * 109.70151 * 353.49025 * 10 9 7 31 31 H 1.08998 * 109.49969 * 185.41012 * 11 10 9 32 32 H 1.09012 * 109.52001 * 65.33093 * 11 10 9 33 33 H 1.08998 * 109.45951 * 301.34947 * 12 11 10 34 34 H 0.96996 * 119.99644 * 334.99428 * 13 12 11 35 35 H 1.08005 * 120.88527 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.01571 * 179.97438 * 24 23 16 37 37 H 1.09003 * 109.50169 * 58.58502 * 26 12 11 38 38 H 1.09001 * 109.49953 * 178.68249 * 26 12 11 39 39 H 1.08993 * 109.58940 * 246.15799 * 27 9 7 40 40 H 1.09004 * 109.58658 * 6.43579 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2731 9 7 1.3700 -2.3625 0.3444 10 6 0.2263 -2.3409 1.2665 11 6 0.4984 -3.3200 2.4127 12 6 0.8133 -4.7014 1.8343 13 7 1.0416 -5.6483 2.9287 14 6 0.8330 -7.0034 2.7274 15 6 0.4053 -7.4770 1.4873 16 6 0.2111 -8.8470 1.3372 17 6 -0.2429 -9.4060 0.0393 18 7 -0.5079 -8.7175 -1.0801 19 7 -0.8714 -9.5703 -1.9770 20 7 -0.8443 -10.7516 -1.4659 21 1 -1.0744 -11.5702 -1.9327 22 7 -0.4591 -10.6764 -0.2385 23 7 0.4392 -9.6500 2.3773 24 6 0.8424 -9.1624 3.5316 25 7 1.0335 -7.8713 3.7153 26 6 2.0684 -4.6173 0.9627 27 6 1.8141 -3.6529 -0.2000 28 1 -0.4850 0.8401 0.0004 29 1 -0.6768 -2.6416 0.7355 30 1 0.0967 -1.3356 1.6676 31 1 -0.3820 -3.3853 3.0521 32 1 1.3480 -2.9684 2.9983 33 1 -0.0268 -5.0418 1.2291 34 1 1.3389 -5.3266 3.7942 35 1 0.2301 -6.7988 0.6652 36 1 1.0177 -9.8401 4.3540 37 1 2.9034 -4.2533 1.5614 38 1 2.3055 -5.6061 0.5700 39 1 1.0405 -4.0607 -0.8505 40 1 2.7333 -3.5126 -0.7689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:50 Heat of formation + Delta-G solvation = 203.755139 kcal Electronic energy + Delta-G solvation = -25716.486396 eV Core-core repulsion = 21991.332888 eV Total energy + Delta-G solvation = -3725.153508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -44.69973 -40.95816 -38.27445 -35.73178 -34.82764 -34.11053 -32.84470 -31.94826 -31.04053 -29.96818 -29.17249 -25.70649 -25.41384 -24.79392 -23.67812 -22.54369 -22.10109 -21.45836 -19.75025 -19.33581 -17.86513 -17.63138 -17.38953 -16.76861 -15.52868 -15.26783 -15.01910 -14.81897 -14.73017 -14.31885 -14.01562 -13.86517 -13.63855 -13.23423 -12.98208 -12.53739 -12.42137 -11.99308 -11.59810 -11.53485 -11.38817 -11.20746 -11.18856 -10.96173 -10.78084 -10.62281 -10.43851 -10.27140 -10.03636 -9.80944 -9.68164 -9.61225 -9.36147 -8.53446 -8.06661 -6.74601 -5.84260 -3.26701 0.39745 0.95885 1.22991 1.96397 2.17519 2.99096 3.15658 3.34873 3.43251 3.45171 3.80090 3.87874 4.41454 4.45942 4.62762 4.72948 5.00617 5.13540 5.26929 5.30272 5.38739 5.44573 5.46393 5.51440 5.70184 5.93074 6.04183 6.11978 6.17641 6.34634 6.39617 6.41485 6.50916 6.69725 6.75884 6.89828 7.21712 7.25212 7.54049 7.60813 7.76274 7.90105 8.18695 8.39572 9.15810 9.78678 10.34728 11.24741 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.003115 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.989192 B = 8985.172842 C =10099.571177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.694 5.694 14 C 0.448 3.552 15 C -0.243 4.243 16 C 0.272 3.728 17 C 0.218 3.782 18 N -0.247 5.247 19 N -0.047 5.047 20 N -0.229 5.229 21 H 0.476 0.524 22 N -0.256 5.256 23 N -0.546 5.546 24 C 0.343 3.657 25 N -0.578 5.578 26 C -0.145 4.145 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.023 0.977 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.407 0.593 35 H 0.157 0.843 36 H 0.200 0.800 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 -20.128 2.982 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.324 5.324 14 C 0.202 3.798 15 C -0.274 4.274 16 C 0.129 3.871 17 C -0.063 4.063 18 N -0.122 5.122 19 N -0.042 5.042 20 N -0.075 5.075 21 H 0.331 0.669 22 N -0.109 5.109 23 N -0.267 5.267 24 C 0.053 3.947 25 N -0.303 5.303 26 C -0.186 4.186 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.243 0.757 35 H 0.175 0.825 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.338 -20.382 2.892 20.630 hybrid contribution 0.359 0.907 -0.148 0.986 sum -0.979 -19.476 2.744 19.692 Atomic orbital electron populations 1.70024 1.05246 1.25504 1.53855 1.25052 0.95296 0.98453 1.00742 0.86234 0.79395 0.83910 0.77298 1.20245 1.21690 1.21550 1.19224 0.92638 0.84691 1.41761 0.91557 1.44088 1.35797 1.01675 1.49891 1.20757 0.88942 0.97988 0.87550 1.22547 1.00934 0.94055 1.01035 1.21297 0.98276 0.88605 0.87034 1.45164 1.69635 1.01422 1.16130 1.18477 0.86503 0.86522 0.88290 1.22111 1.09455 0.96044 0.99800 1.17584 0.93104 0.88695 0.87750 1.23066 1.02948 0.85504 0.94827 1.76192 1.14327 1.24092 0.97553 1.79001 1.15118 0.88359 1.21710 1.47886 1.42085 1.10848 1.06723 0.66900 1.75121 1.16432 1.21357 0.97966 1.68216 1.18727 1.39441 1.00271 1.24560 0.88495 0.88600 0.93069 1.67975 1.24647 1.04355 1.33359 1.22513 0.97318 0.99710 0.99032 1.20885 0.98179 0.86567 0.92419 0.93602 0.95921 0.88864 0.92427 0.91852 0.90105 0.75653 0.82512 0.78395 0.91758 0.92766 0.95924 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.03 2.99 -172.33 -0.52 -14.55 16 10 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 11 C -0.15 -2.48 5.55 -26.62 -0.15 -2.63 16 12 C 0.15 2.32 2.12 -67.89 -0.14 2.17 16 13 N -0.69 -9.34 5.23 -53.77 -0.28 -9.63 16 14 C 0.45 6.20 7.69 -154.77 -1.19 5.01 16 15 C -0.24 -3.38 8.58 -38.77 -0.33 -3.71 16 16 C 0.27 3.78 6.79 -82.65 -0.56 3.22 16 17 C 0.22 2.92 8.06 -156.29 -1.26 1.66 16 18 N -0.25 -3.39 12.30 32.15 0.40 -2.99 16 19 N -0.05 -0.53 13.47 60.35 0.81 0.29 16 20 N -0.23 -1.89 7.90 60.35 0.48 -1.41 16 21 H 0.48 1.40 8.96 -340.36 -3.05 -1.65 16 22 N -0.26 -2.93 12.40 32.17 0.40 -2.53 16 23 N -0.55 -7.22 10.40 -11.18 -0.12 -7.34 16 24 C 0.34 3.99 12.28 -92.29 -1.13 2.86 16 25 N -0.58 -7.61 10.46 -13.86 -0.15 -7.76 16 26 C -0.15 -2.37 5.62 -26.61 -0.15 -2.52 16 27 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.08 1.27 6.51 -51.93 -0.34 0.93 16 34 H 0.41 5.07 8.73 -40.82 -0.36 4.72 16 35 H 0.16 2.22 6.23 -52.48 -0.33 1.89 16 36 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.82 7.78 -51.93 -0.40 0.41 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -31.59 337.41 -10.78 -42.37 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.29 Total: 1.15 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -5.19 Total: 5.92 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: 1.65 Total: -70.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.59 -10.78 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.121 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds