Wall clock time and date at job start Tue Mar 31 2020 11:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00265 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46953 * 300.00578 * 3 2 1 6 6 H 1.48504 * 109.46731 * 60.00449 * 3 2 1 7 7 C 1.38812 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 163.06050 * 7 2 1 9 9 N 1.36931 * 120.00262 * 343.06320 * 7 2 1 10 10 C 1.46925 * 120.63124 * 331.83605 * 9 7 2 11 11 C 1.53190 * 108.78132 * 233.63355 * 10 9 7 12 12 C 1.53035 * 109.31018 * 305.36640 * 11 10 9 13 13 N 1.46507 * 109.45897 * 181.38306 * 12 11 10 14 14 C 1.38578 * 120.00004 * 154.99858 * 13 12 11 15 15 C 1.39462 * 120.49454 * 359.97438 * 14 13 12 16 16 C 1.39183 * 118.22809 * 179.97438 * 15 14 13 17 17 C 1.48424 * 120.50973 * 180.02562 * 16 15 14 18 18 N 1.34065 * 126.67210 * 359.97438 * 17 16 15 19 19 N 1.28987 * 107.26522 * 179.97438 * 18 17 16 20 20 N 1.28736 * 108.94793 * 0.02562 * 19 18 17 21 21 H 0.97000 * 125.33438 * 179.97438 * 20 19 18 22 22 N 1.28867 * 109.32013 * 359.74532 * 20 19 18 23 23 N 1.33363 * 118.98978 * 0.02562 * 16 15 14 24 24 C 1.31632 * 120.88371 * 359.97438 * 23 16 15 25 25 N 1.31801 * 121.97034 * 0.25579 * 24 23 16 26 26 C 1.53036 * 109.54141 * 61.36393 * 12 11 10 27 27 C 1.46924 * 120.63597 * 151.86373 * 9 7 2 28 28 H 0.97003 * 119.99918 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58753 * 113.84153 * 10 9 7 30 30 H 1.09002 * 109.70151 * 353.49025 * 10 9 7 31 31 H 1.08998 * 109.49969 * 185.41012 * 11 10 9 32 32 H 1.09012 * 109.52001 * 65.33093 * 11 10 9 33 33 H 1.08998 * 109.45951 * 301.34947 * 12 11 10 34 34 H 0.96996 * 119.99644 * 334.99428 * 13 12 11 35 35 H 1.08005 * 120.88527 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.01571 * 179.97438 * 24 23 16 37 37 H 1.09003 * 109.50169 * 58.58502 * 26 12 11 38 38 H 1.09001 * 109.49953 * 178.68249 * 26 12 11 39 39 H 1.08993 * 109.58940 * 246.15799 * 27 9 7 40 40 H 1.09004 * 109.58658 * 6.43579 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2731 9 7 1.3700 -2.3625 0.3444 10 6 0.2263 -2.3409 1.2665 11 6 0.4984 -3.3200 2.4127 12 6 0.8133 -4.7014 1.8343 13 7 1.0416 -5.6483 2.9287 14 6 0.8330 -7.0034 2.7274 15 6 0.4053 -7.4770 1.4873 16 6 0.2111 -8.8470 1.3372 17 6 -0.2429 -9.4060 0.0393 18 7 -0.5079 -8.7175 -1.0801 19 7 -0.8714 -9.5703 -1.9770 20 7 -0.8443 -10.7516 -1.4659 21 1 -1.0744 -11.5702 -1.9327 22 7 -0.4591 -10.6764 -0.2385 23 7 0.4392 -9.6500 2.3773 24 6 0.8424 -9.1624 3.5316 25 7 1.0335 -7.8713 3.7153 26 6 2.0684 -4.6173 0.9627 27 6 1.8141 -3.6529 -0.2000 28 1 -0.4850 0.8401 0.0004 29 1 -0.6768 -2.6416 0.7355 30 1 0.0967 -1.3356 1.6676 31 1 -0.3820 -3.3853 3.0521 32 1 1.3480 -2.9684 2.9983 33 1 -0.0268 -5.0418 1.2291 34 1 1.3389 -5.3266 3.7942 35 1 0.2301 -6.7988 0.6652 36 1 1.0177 -9.8401 4.3540 37 1 2.9034 -4.2533 1.5614 38 1 2.3055 -5.6061 0.5700 39 1 1.0405 -4.0607 -0.8505 40 1 2.7333 -3.5126 -0.7689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:47 Heat of formation + Delta-G solvation = 182.449224 kcal Electronic energy + Delta-G solvation = -25717.410290 eV Core-core repulsion = 21991.332888 eV Total energy + Delta-G solvation = -3726.077402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.58378 -41.96801 -39.67972 -37.11237 -35.79055 -35.13019 -34.30780 -33.14432 -32.37255 -31.47568 -30.64400 -27.01965 -26.66561 -25.86571 -24.82314 -23.95870 -23.46742 -22.72646 -21.03848 -20.43285 -19.09250 -18.66493 -18.41986 -18.26655 -16.90435 -16.59723 -16.28889 -16.03037 -15.81598 -15.50401 -15.32940 -15.22631 -14.95994 -14.77033 -14.57391 -14.00701 -13.42419 -13.27079 -13.03361 -12.97641 -12.64043 -12.54636 -12.48957 -12.30430 -12.26848 -12.05286 -11.96363 -11.78767 -11.65036 -11.32487 -11.29978 -10.65949 -10.53326 -10.36662 -9.17091 -8.68098 -7.86612 -5.31154 -0.57939 0.07557 0.23267 1.18732 1.28740 1.47833 1.50689 1.60409 1.90594 2.24000 2.53051 2.88036 2.88997 3.29783 3.50383 3.64415 3.67228 3.73562 3.84955 4.00252 4.03717 4.26115 4.35865 4.43497 4.47896 4.59480 4.67398 4.82306 4.85881 4.96063 5.06927 5.16684 5.26207 5.35101 5.50133 5.54559 5.65031 5.67209 5.74238 6.15523 6.41278 6.56496 6.99906 7.16970 7.20438 7.87163 8.38177 9.20336 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.003115 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.989192 B = 8985.172842 C =10099.571177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.130 4.130 12 C 0.166 3.834 13 N -0.688 5.688 14 C 0.444 3.556 15 C -0.253 4.253 16 C 0.268 3.732 17 C 0.202 3.798 18 N -0.276 5.276 19 N -0.051 5.051 20 N -0.195 5.195 21 H 0.497 0.503 22 N -0.257 5.257 23 N -0.554 5.554 24 C 0.346 3.654 25 N -0.583 5.583 26 C -0.130 4.130 27 C 0.144 3.856 28 H 0.250 0.750 29 H 0.002 0.998 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.238 0.762 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -22.125 3.878 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.170 4.170 12 C 0.062 3.938 13 N -0.318 5.318 14 C 0.198 3.802 15 C -0.284 4.284 16 C 0.125 3.875 17 C -0.079 4.079 18 N -0.149 5.149 19 N -0.046 5.046 20 N -0.047 5.047 21 H 0.357 0.643 22 N -0.110 5.110 23 N -0.274 5.274 24 C 0.057 3.943 25 N -0.308 5.308 26 C -0.170 4.170 27 C 0.018 3.982 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.168 0.832 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.637 -22.434 3.789 22.760 hybrid contribution 0.112 1.339 -0.496 1.432 sum -0.525 -21.095 3.293 21.357 Atomic orbital electron populations 1.70168 1.06534 1.25779 1.55399 1.25746 0.96007 1.01312 1.01250 0.85265 0.78658 0.80131 0.76722 1.19225 1.22146 1.21621 1.19520 0.92831 0.85951 1.40864 0.91652 1.44338 1.35938 1.02289 1.50734 1.20547 0.87949 0.97583 0.88598 1.22259 1.01889 0.93714 0.99089 1.20924 0.97631 0.88035 0.87236 1.44804 1.70081 1.01167 1.15778 1.18509 0.86627 0.86535 0.88502 1.22062 1.10373 0.96190 0.99792 1.17738 0.92783 0.88804 0.88204 1.23087 1.03919 0.86050 0.94863 1.76179 1.15477 1.25189 0.98066 1.78938 1.15264 0.88980 1.21386 1.47930 1.39748 1.11169 1.05827 0.64260 1.75071 1.16403 1.20608 0.98965 1.68297 1.19057 1.39484 1.00592 1.25374 0.86863 0.88593 0.93487 1.68044 1.24877 1.04874 1.33044 1.22300 0.97671 0.99313 0.97715 1.20990 0.97719 0.85734 0.93792 0.94083 0.97984 0.92158 0.90521 0.91638 0.90373 0.74820 0.83184 0.74588 0.91963 0.91108 0.96295 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 11.19 21.65 0.24 -53.64 16 2 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 3 Si 0.96 44.07 29.59 68.60 2.03 46.10 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.26 -14.01 9.58 84.03 0.81 -13.20 16 8 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -29.33 2.99 -699.12 -2.09 -31.42 16 10 C 0.18 8.13 5.30 86.36 0.46 8.59 16 11 C -0.13 -4.33 5.55 30.67 0.17 -4.16 16 12 C 0.17 4.90 2.12 45.01 0.10 4.99 16 13 N -0.69 -17.25 5.23 -324.02 -1.69 -18.94 16 14 C 0.44 11.49 7.69 133.10 1.02 12.51 16 15 C -0.25 -6.77 8.58 22.79 0.20 -6.57 16 16 C 0.27 7.11 6.79 41.85 0.28 7.39 16 17 C 0.20 5.19 8.06 137.36 1.11 6.30 16 18 N -0.28 -7.37 12.30 -52.19 -0.64 -8.01 16 19 N -0.05 -1.08 13.47 37.02 0.50 -0.58 16 20 N -0.19 -2.84 7.90 37.02 0.29 -2.55 16 21 H 0.50 1.74 8.96 -347.53 -3.12 -1.38 16 22 N -0.26 -5.43 12.40 -52.14 -0.65 -6.08 16 23 N -0.55 -13.50 10.40 -189.29 -1.97 -15.47 16 24 C 0.35 7.11 12.28 180.93 2.22 9.34 16 25 N -0.58 -13.95 10.46 -197.77 -2.07 -16.02 16 26 C -0.13 -4.09 5.62 30.67 0.17 -3.91 16 27 C 0.14 5.71 6.52 86.36 0.56 6.27 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.06 3.13 6.06 -2.39 -0.01 3.11 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.08 2.40 6.51 -2.39 -0.02 2.39 16 34 H 0.41 9.39 8.73 -92.71 -0.81 8.58 16 35 H 0.15 4.19 6.23 -2.91 -0.02 4.17 16 36 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.02 7.78 -2.39 -0.02 2.01 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 Total: -1.00 -68.55 337.41 -1.34 -69.89 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.80 Total: 11.38 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 7.51 Total: 25.36 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -8.08 Total: -152.72 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.55 -1.34 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.335 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds