Wall clock time and date at job start Tue Mar 31 2020 11:40:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.36660 * 119.77686 * 2 1
4 4 C 1.39663 * 119.70764 * 180.02562 * 3 2 1
5 5 C 1.46253 * 134.19179 * 180.02562 * 4 3 2
6 6 C 1.35806 * 106.08094 * 179.97438 * 5 4 3
7 7 C 1.46973 * 125.12788 * 179.97438 * 6 5 4
8 8 O 1.21661 * 119.99830 * 353.22795 * 7 6 5
9 9 N 1.34772 * 120.00423 * 173.22309 * 7 6 5
10 10 C 1.46506 * 119.99843 * 3.21877 * 9 7 6
11 11 C 1.46499 * 120.00688 * 183.21891 * 9 7 6
12 12 C 1.53001 * 109.47393 * 89.99966 * 11 9 7
13 13 N 1.46497 * 109.47071 * 180.02562 * 12 11 9
14 14 C 1.36939 * 119.99903 * 180.02562 * 13 12 11
15 15 H 1.08000 * 119.99869 * 359.97438 * 14 13 12
16 16 C 1.38812 * 119.99887 * 180.02562 * 14 13 12
17 17 N 1.31612 * 119.99955 * 359.97438 * 16 14 13
18 18 Si 1.86803 * 119.99601 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.47195 * 59.99696 * 18 16 14
20 20 H 1.48505 * 109.47085 * 179.97438 * 18 16 14
21 21 H 1.48499 * 109.47178 * 299.99607 * 18 16 14
22 22 O 1.34952 * 109.74332 * 0.02562 * 6 5 4
23 23 C 1.34713 * 110.86412 * 0.02562 * 22 6 5
24 24 C 1.38986 * 133.24317 * 180.02562 * 23 22 6
25 25 C 1.37843 * 119.84819 * 180.25429 * 24 23 22
26 26 C 1.50708 * 119.62411 * 179.72204 * 25 24 23
27 27 H 1.09000 * 109.47371 * 90.00727 * 1 2 3
28 28 H 1.09008 * 109.47295 * 210.00513 * 1 2 3
29 29 H 1.09000 * 109.47218 * 330.00063 * 1 2 3
30 30 H 1.07995 * 120.14139 * 0.03835 * 3 2 1
31 31 H 1.08004 * 126.95874 * 359.95785 * 5 4 3
32 32 H 1.09004 * 109.46515 * 84.00790 * 10 9 7
33 33 H 1.08995 * 109.46941 * 204.01080 * 10 9 7
34 34 H 1.09000 * 109.46778 * 324.01072 * 10 9 7
35 35 H 1.08999 * 109.47463 * 210.00286 * 11 9 7
36 36 H 1.09009 * 109.46774 * 329.99898 * 11 9 7
37 37 H 1.08999 * 109.47077 * 300.00556 * 12 11 9
38 38 H 1.08997 * 109.46966 * 59.99914 * 12 11 9
39 39 H 0.96998 * 120.00506 * 359.97438 * 13 12 11
40 40 H 0.97003 * 119.99325 * 180.02562 * 17 16 14
41 41 H 1.07992 * 120.08005 * 359.97433 * 24 23 22
42 42 H 1.09002 * 109.46831 * 90.00393 * 26 25 24
43 43 H 1.09005 * 109.46745 * 209.99711 * 26 25 24
44 44 H 1.08998 * 109.46924 * 330.00058 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1857 1.1862 0.0000
4 6 3.5823 1.1845 -0.0005
5 6 4.6030 2.2319 -0.0002
6 6 5.8001 1.5906 -0.0005
7 6 7.1132 2.2508 -0.0009
8 8 7.1867 3.4588 -0.1252
9 7 8.2360 1.5180 0.1365
10 6 8.1524 0.0575 0.2154
11 6 9.5400 2.1819 0.2070
12 6 9.8735 2.4975 1.6665
13 7 11.1773 3.1619 1.7368
14 6 11.6879 3.5412 2.9495
15 1 11.1292 3.3510 3.8540
16 6 12.9230 4.1712 3.0161
17 7 13.6035 4.4035 1.9138
18 14 13.6191 4.6893 4.6703
19 1 13.7790 3.4937 5.5365
20 1 14.9411 5.3356 4.4706
21 1 12.6910 5.6500 5.3190
22 8 5.6021 0.2556 -0.0016
23 6 4.2865 -0.0343 -0.0025
24 6 3.5745 -1.2279 -0.0033
25 6 2.1963 -1.2046 -0.0096
26 6 1.4294 -2.5019 -0.0167
27 1 -0.3634 -0.0001 -1.0276
28 1 -0.3634 -0.8900 0.5139
29 1 -0.3634 0.8900 0.5138
30 1 1.6444 2.1207 0.0006
31 1 4.4382 3.2993 -0.0001
32 1 8.1104 -0.3589 -0.7911
33 1 9.0307 -0.3292 0.7323
34 1 7.2540 -0.2259 0.7637
35 1 10.3051 1.5249 -0.2066
36 1 9.5076 3.1082 -0.3669
37 1 9.1084 3.1545 2.0801
38 1 9.9058 1.5713 2.2402
39 1 11.6792 3.3324 0.9245
40 1 14.4668 4.8434 1.9604
41 1 4.0998 -2.1715 -0.0036
42 1 1.2397 -2.8175 1.0092
43 1 0.4807 -2.3602 -0.5345
44 1 2.0130 -3.2661 -0.5301
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691558680.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:40:09
Heat of formation + Delta-G solvation = 9.344524 kcal
Electronic energy + Delta-G solvation = -25272.532627 eV
Core-core repulsion = 21577.903683 eV
Total energy + Delta-G solvation = -3694.628944 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 2.11 seconds
Orbital eigenvalues (eV)
-42.75401 -39.75379 -38.84993 -36.10586 -34.39782 -33.62440 -32.61368 -31.57648
-31.14676 -28.59135 -27.52090 -27.13909 -26.26017 -24.14130 -22.90512 -22.02799
-21.63838 -21.19936 -19.68727 -17.70073 -17.55645 -17.15301 -16.70496 -15.98069
-15.57592 -15.43334 -15.18345 -14.55455 -14.41139 -14.35162 -14.09155 -13.50853
-13.39779 -13.27363 -13.25113 -13.22591 -12.97356 -12.84861 -12.74484 -12.53050
-12.09916 -11.84160 -11.75517 -11.31152 -11.20658 -11.00170 -10.88808 -10.67128
-10.33287 -10.26180 -10.11200 -9.72284 -8.85975 -8.72113 -8.69543 -8.35325
-6.92763 -5.74724 -3.04231 0.33528 1.00426 1.63756 2.24869 2.94886
3.11750 3.30356 3.46527 3.50380 3.51947 4.06079 4.29855 4.38772
4.59891 4.62521 4.69193 4.77615 4.84440 5.07427 5.14989 5.17104
5.20575 5.22001 5.31743 5.39790 5.40747 5.47384 5.56206 5.61499
5.65327 5.68501 5.79367 5.90459 5.93909 6.01962 6.07894 6.08711
6.17415 6.28925 6.48783 6.69079 6.80984 6.87217 7.32426 7.71351
8.01251 8.43569 9.54541 10.09922 10.45316 11.48036
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.029147 B = 0.002194 C = 0.002177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 960.424754 B =12760.751332 C =12856.838625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.107 4.107
3 C -0.058 4.058
4 C -0.142 4.142
5 C -0.118 4.118
6 C -0.016 4.016
7 C 0.591 3.409
8 O -0.508 6.508
9 N -0.598 5.598
10 C 0.073 3.927
11 C 0.106 3.894
12 C 0.142 3.858
13 N -0.730 5.730
14 C -0.239 4.239
15 H 0.070 0.930
16 C -0.014 4.014
17 N -0.933 5.933
18 Si 0.910 3.090
19 H -0.286 1.286
20 H -0.290 1.290
21 H -0.285 1.285
22 O -0.177 6.177
23 C 0.062 3.938
24 C -0.110 4.110
25 C -0.053 4.053
26 C -0.116 4.116
27 H 0.070 0.930
28 H 0.070 0.930
29 H 0.067 0.933
30 H 0.130 0.870
31 H 0.170 0.830
32 H 0.059 0.941
33 H 0.082 0.918
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.023 0.977
38 H 0.020 0.980
39 H 0.384 0.616
40 H 0.256 0.744
41 H 0.134 0.866
42 H 0.075 0.925
43 H 0.073 0.927
44 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.617 -15.428 -7.137 32.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.107 4.107
3 C -0.077 4.077
4 C -0.143 4.143
5 C -0.138 4.138
6 C -0.065 4.065
7 C 0.378 3.622
8 O -0.385 6.385
9 N -0.329 5.329
10 C -0.070 4.070
11 C -0.016 4.016
12 C 0.013 3.987
13 N -0.375 5.375
14 C -0.371 4.371
15 H 0.088 0.912
16 C -0.210 4.210
17 N -0.582 5.582
18 Si 0.741 3.259
19 H -0.213 1.213
20 H -0.216 1.216
21 H -0.212 1.212
22 O -0.079 6.079
23 C 0.014 3.986
24 C -0.128 4.128
25 C -0.053 4.053
26 C -0.172 4.172
27 H 0.089 0.911
28 H 0.088 0.912
29 H 0.086 0.914
30 H 0.148 0.852
31 H 0.187 0.813
32 H 0.077 0.923
33 H 0.100 0.900
34 H 0.100 0.900
35 H 0.101 0.899
36 H 0.108 0.892
37 H 0.041 0.959
38 H 0.038 0.962
39 H 0.218 0.782
40 H 0.066 0.934
41 H 0.152 0.848
42 H 0.094 0.906
43 H 0.092 0.908
44 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -27.287 -14.962 -7.034 31.905
hybrid contribution 0.655 0.415 0.688 1.037
sum -26.632 -14.547 -6.346 31.002
Atomic orbital electron populations
1.20797 0.90610 1.03037 1.02434 1.19369 0.96387 0.92067 1.02861
1.20202 0.91122 0.98256 0.98078 1.19880 0.94492 0.92483 1.07409
1.22719 0.89180 1.00135 1.01796 1.22090 0.95942 0.80382 1.08130
1.16811 0.81361 0.86088 0.77986 1.90921 1.85215 1.12396 1.49945
1.47721 1.06700 1.07602 1.70903 1.22067 1.03735 0.78891 1.02278
1.21848 0.81487 0.98690 0.99536 1.20918 0.89497 0.95701 0.92556
1.42186 1.17327 1.70774 1.07172 1.19160 1.00496 1.31505 0.85897
0.91222 1.24757 0.97509 1.01552 0.97161 1.69651 1.14728 1.47948
1.25835 0.86225 0.78125 0.78317 0.83258 1.21259 1.21633 1.21213
1.84325 1.23702 1.23658 1.76204 1.19814 0.81690 0.95552 1.01579
1.19766 0.92386 0.94777 1.05862 1.19557 0.92065 0.95416 0.98263
1.20859 1.00015 0.93539 1.02790 0.91114 0.91157 0.91413 0.85196
0.81286 0.92256 0.89973 0.89986 0.89859 0.89217 0.95872 0.96224
0.78196 0.93418 0.84788 0.90639 0.90820 0.91146
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.56 9.15 36.00 0.33 -0.23 16
2 C -0.11 -0.84 5.85 -104.99 -0.61 -1.45 16
3 C -0.06 -0.54 9.68 -39.62 -0.38 -0.93 16
4 C -0.14 -1.65 6.38 -105.19 -0.67 -2.32 16
5 C -0.12 -1.51 10.81 -37.24 -0.40 -1.91 16
6 C -0.02 -0.22 6.73 -36.92 -0.25 -0.47 16
7 C 0.59 9.79 7.65 -12.72 -0.10 9.69 16
8 O -0.51 -10.05 16.39 5.22 0.09 -9.97 16
9 N -0.60 -9.19 2.87 -183.01 -0.53 -9.72 16
10 C 0.07 0.85 9.60 59.85 0.57 1.42 16
11 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16
12 C 0.14 3.05 6.58 -4.04 -0.03 3.03 16
13 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16
14 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16
15 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16
16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
17 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16
18 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16
19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
22 O -0.18 -2.23 7.12 2.76 0.02 -2.21 16
23 C 0.06 0.71 7.41 -38.35 -0.28 0.43 16
24 C -0.11 -0.99 9.70 -39.45 -0.38 -1.37 16
25 C -0.05 -0.41 5.88 -104.56 -0.61 -1.02 16
26 C -0.12 -0.54 9.15 36.01 0.33 -0.21 16
27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.07 0.27 6.69 -51.92 -0.35 -0.07 16
29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16
30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16
31 H 0.17 1.97 8.06 -52.48 -0.42 1.54 16
32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16
34 H 0.08 0.93 5.38 -51.93 -0.28 0.65 16
35 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16
36 H 0.09 1.71 7.38 -51.92 -0.38 1.33 16
37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
39 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16
40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
43 H 0.07 0.27 6.69 -51.93 -0.35 -0.08 16
44 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16
LS Contribution 368.57 15.07 5.55 5.55
Total: -1.00 -34.31 368.57 -8.53 -42.84
By element:
Atomic # 1 Polarization: 10.59 SS G_CDS: -6.27 Total: 4.32 kcal
Atomic # 6 Polarization: 1.67 SS G_CDS: -2.76 Total: -1.10 kcal
Atomic # 7 Polarization: -57.19 SS G_CDS: -0.14 Total: -57.33 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: 0.11 Total: -12.17 kcal
Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -34.31 -8.53 -42.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691558680.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.185 kcal
(2) G-P(sol) polarization free energy of solvation -34.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.11 seconds