Wall clock time and date at job start Tue Mar 31 2020 11:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36660 * 119.77686 * 2 1 4 4 C 1.39663 * 119.70764 * 180.02562 * 3 2 1 5 5 C 1.46253 * 134.19179 * 180.02562 * 4 3 2 6 6 C 1.35806 * 106.08094 * 179.97438 * 5 4 3 7 7 C 1.46973 * 125.12788 * 179.97438 * 6 5 4 8 8 O 1.21661 * 119.99830 * 353.22795 * 7 6 5 9 9 N 1.34772 * 120.00423 * 173.22309 * 7 6 5 10 10 C 1.46506 * 119.99843 * 3.21877 * 9 7 6 11 11 C 1.46499 * 120.00688 * 183.21891 * 9 7 6 12 12 C 1.53001 * 109.47393 * 89.99966 * 11 9 7 13 13 N 1.46497 * 109.47071 * 180.02562 * 12 11 9 14 14 C 1.36939 * 119.99903 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99887 * 180.02562 * 14 13 12 17 17 N 1.31612 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47195 * 59.99696 * 18 16 14 20 20 H 1.48505 * 109.47085 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47178 * 299.99607 * 18 16 14 22 22 O 1.34952 * 109.74332 * 0.02562 * 6 5 4 23 23 C 1.34713 * 110.86412 * 0.02562 * 22 6 5 24 24 C 1.38986 * 133.24317 * 180.02562 * 23 22 6 25 25 C 1.37843 * 119.84819 * 180.25429 * 24 23 22 26 26 C 1.50708 * 119.62411 * 179.72204 * 25 24 23 27 27 H 1.09000 * 109.47371 * 90.00727 * 1 2 3 28 28 H 1.09008 * 109.47295 * 210.00513 * 1 2 3 29 29 H 1.09000 * 109.47218 * 330.00063 * 1 2 3 30 30 H 1.07995 * 120.14139 * 0.03835 * 3 2 1 31 31 H 1.08004 * 126.95874 * 359.95785 * 5 4 3 32 32 H 1.09004 * 109.46515 * 84.00790 * 10 9 7 33 33 H 1.08995 * 109.46941 * 204.01080 * 10 9 7 34 34 H 1.09000 * 109.46778 * 324.01072 * 10 9 7 35 35 H 1.08999 * 109.47463 * 210.00286 * 11 9 7 36 36 H 1.09009 * 109.46774 * 329.99898 * 11 9 7 37 37 H 1.08999 * 109.47077 * 300.00556 * 12 11 9 38 38 H 1.08997 * 109.46966 * 59.99914 * 12 11 9 39 39 H 0.96998 * 120.00506 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99325 * 180.02562 * 17 16 14 41 41 H 1.07992 * 120.08005 * 359.97433 * 24 23 22 42 42 H 1.09002 * 109.46831 * 90.00393 * 26 25 24 43 43 H 1.09005 * 109.46745 * 209.99711 * 26 25 24 44 44 H 1.08998 * 109.46924 * 330.00058 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6030 2.2319 -0.0002 6 6 5.8001 1.5906 -0.0005 7 6 7.1132 2.2508 -0.0009 8 8 7.1867 3.4588 -0.1252 9 7 8.2360 1.5180 0.1365 10 6 8.1524 0.0575 0.2154 11 6 9.5400 2.1819 0.2070 12 6 9.8735 2.4975 1.6665 13 7 11.1773 3.1619 1.7368 14 6 11.6879 3.5412 2.9495 15 1 11.1292 3.3510 3.8540 16 6 12.9230 4.1712 3.0161 17 7 13.6035 4.4035 1.9138 18 14 13.6191 4.6893 4.6703 19 1 13.7790 3.4937 5.5365 20 1 14.9411 5.3356 4.4706 21 1 12.6910 5.6500 5.3190 22 8 5.6021 0.2556 -0.0016 23 6 4.2865 -0.0343 -0.0025 24 6 3.5745 -1.2279 -0.0033 25 6 2.1963 -1.2046 -0.0096 26 6 1.4294 -2.5019 -0.0167 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6444 2.1207 0.0006 31 1 4.4382 3.2993 -0.0001 32 1 8.1104 -0.3589 -0.7911 33 1 9.0307 -0.3292 0.7323 34 1 7.2540 -0.2259 0.7637 35 1 10.3051 1.5249 -0.2066 36 1 9.5076 3.1082 -0.3669 37 1 9.1084 3.1545 2.0801 38 1 9.9058 1.5713 2.2402 39 1 11.6792 3.3324 0.9245 40 1 14.4668 4.8434 1.9604 41 1 4.0998 -2.1715 -0.0036 42 1 1.2397 -2.8175 1.0092 43 1 0.4807 -2.3602 -0.5345 44 1 2.0130 -3.2661 -0.5301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691558680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:09 Heat of formation + Delta-G solvation = 9.344524 kcal Electronic energy + Delta-G solvation = -25272.532627 eV Core-core repulsion = 21577.903683 eV Total energy + Delta-G solvation = -3694.628944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.75401 -39.75379 -38.84993 -36.10586 -34.39782 -33.62440 -32.61368 -31.57648 -31.14676 -28.59135 -27.52090 -27.13909 -26.26017 -24.14130 -22.90512 -22.02799 -21.63838 -21.19936 -19.68727 -17.70073 -17.55645 -17.15301 -16.70496 -15.98069 -15.57592 -15.43334 -15.18345 -14.55455 -14.41139 -14.35162 -14.09155 -13.50853 -13.39779 -13.27363 -13.25113 -13.22591 -12.97356 -12.84861 -12.74484 -12.53050 -12.09916 -11.84160 -11.75517 -11.31152 -11.20658 -11.00170 -10.88808 -10.67128 -10.33287 -10.26180 -10.11200 -9.72284 -8.85975 -8.72113 -8.69543 -8.35325 -6.92763 -5.74724 -3.04231 0.33528 1.00426 1.63756 2.24869 2.94886 3.11750 3.30356 3.46527 3.50380 3.51947 4.06079 4.29855 4.38772 4.59891 4.62521 4.69193 4.77615 4.84440 5.07427 5.14989 5.17104 5.20575 5.22001 5.31743 5.39790 5.40747 5.47384 5.56206 5.61499 5.65327 5.68501 5.79367 5.90459 5.93909 6.01962 6.07894 6.08711 6.17415 6.28925 6.48783 6.69079 6.80984 6.87217 7.32426 7.71351 8.01251 8.43569 9.54541 10.09922 10.45316 11.48036 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.029147 B = 0.002194 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.424754 B =12760.751332 C =12856.838625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.107 4.107 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.016 4.016 7 C 0.591 3.409 8 O -0.508 6.508 9 N -0.598 5.598 10 C 0.073 3.927 11 C 0.106 3.894 12 C 0.142 3.858 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 O -0.177 6.177 23 C 0.062 3.938 24 C -0.110 4.110 25 C -0.053 4.053 26 C -0.116 4.116 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.170 0.830 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.023 0.977 38 H 0.020 0.980 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.134 0.866 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.617 -15.428 -7.137 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.065 4.065 7 C 0.378 3.622 8 O -0.385 6.385 9 N -0.329 5.329 10 C -0.070 4.070 11 C -0.016 4.016 12 C 0.013 3.987 13 N -0.375 5.375 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.741 3.259 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 O -0.079 6.079 23 C 0.014 3.986 24 C -0.128 4.128 25 C -0.053 4.053 26 C -0.172 4.172 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.187 0.813 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.152 0.848 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.287 -14.962 -7.034 31.905 hybrid contribution 0.655 0.415 0.688 1.037 sum -26.632 -14.547 -6.346 31.002 Atomic orbital electron populations 1.20797 0.90610 1.03037 1.02434 1.19369 0.96387 0.92067 1.02861 1.20202 0.91122 0.98256 0.98078 1.19880 0.94492 0.92483 1.07409 1.22719 0.89180 1.00135 1.01796 1.22090 0.95942 0.80382 1.08130 1.16811 0.81361 0.86088 0.77986 1.90921 1.85215 1.12396 1.49945 1.47721 1.06700 1.07602 1.70903 1.22067 1.03735 0.78891 1.02278 1.21848 0.81487 0.98690 0.99536 1.20918 0.89497 0.95701 0.92556 1.42186 1.17327 1.70774 1.07172 1.19160 1.00496 1.31505 0.85897 0.91222 1.24757 0.97509 1.01552 0.97161 1.69651 1.14728 1.47948 1.25835 0.86225 0.78125 0.78317 0.83258 1.21259 1.21633 1.21213 1.84325 1.23702 1.23658 1.76204 1.19814 0.81690 0.95552 1.01579 1.19766 0.92386 0.94777 1.05862 1.19557 0.92065 0.95416 0.98263 1.20859 1.00015 0.93539 1.02790 0.91114 0.91157 0.91413 0.85196 0.81286 0.92256 0.89973 0.89986 0.89859 0.89217 0.95872 0.96224 0.78196 0.93418 0.84788 0.90639 0.90820 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.15 36.00 0.33 -0.23 16 2 C -0.11 -0.84 5.85 -104.99 -0.61 -1.45 16 3 C -0.06 -0.54 9.68 -39.62 -0.38 -0.93 16 4 C -0.14 -1.65 6.38 -105.19 -0.67 -2.32 16 5 C -0.12 -1.51 10.81 -37.24 -0.40 -1.91 16 6 C -0.02 -0.22 6.73 -36.92 -0.25 -0.47 16 7 C 0.59 9.79 7.65 -12.72 -0.10 9.69 16 8 O -0.51 -10.05 16.39 5.22 0.09 -9.97 16 9 N -0.60 -9.19 2.87 -183.01 -0.53 -9.72 16 10 C 0.07 0.85 9.60 59.85 0.57 1.42 16 11 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 12 C 0.14 3.05 6.58 -4.04 -0.03 3.03 16 13 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16 14 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 15 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 18 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 O -0.18 -2.23 7.12 2.76 0.02 -2.21 16 23 C 0.06 0.71 7.41 -38.35 -0.28 0.43 16 24 C -0.11 -0.99 9.70 -39.45 -0.38 -1.37 16 25 C -0.05 -0.41 5.88 -104.56 -0.61 -1.02 16 26 C -0.12 -0.54 9.15 36.01 0.33 -0.21 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.27 6.69 -51.92 -0.35 -0.07 16 29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.17 1.97 8.06 -52.48 -0.42 1.54 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.08 0.93 5.38 -51.93 -0.28 0.65 16 35 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.09 1.71 7.38 -51.92 -0.38 1.33 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.27 6.69 -51.93 -0.35 -0.08 16 44 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -34.31 368.57 -8.53 -42.84 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.27 Total: 4.32 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.76 Total: -1.10 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.14 Total: -57.33 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.11 Total: -12.17 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.31 -8.53 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691558680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.185 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds