Wall clock time and date at job start Tue Mar 31 2020 11:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36660 * 119.77686 * 2 1 4 4 C 1.39663 * 119.70764 * 180.02562 * 3 2 1 5 5 C 1.46253 * 134.19179 * 180.02562 * 4 3 2 6 6 C 1.35806 * 106.08094 * 179.97438 * 5 4 3 7 7 C 1.46973 * 125.12788 * 179.97438 * 6 5 4 8 8 O 1.21661 * 119.99830 * 353.22795 * 7 6 5 9 9 N 1.34772 * 120.00423 * 173.22309 * 7 6 5 10 10 C 1.46506 * 119.99843 * 3.21877 * 9 7 6 11 11 C 1.46499 * 120.00688 * 183.21891 * 9 7 6 12 12 C 1.53001 * 109.47393 * 89.99966 * 11 9 7 13 13 N 1.46497 * 109.47071 * 180.02562 * 12 11 9 14 14 C 1.36939 * 119.99903 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99887 * 180.02562 * 14 13 12 17 17 N 1.31612 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47195 * 59.99696 * 18 16 14 20 20 H 1.48505 * 109.47085 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47178 * 299.99607 * 18 16 14 22 22 O 1.34952 * 109.74332 * 0.02562 * 6 5 4 23 23 C 1.34713 * 110.86412 * 0.02562 * 22 6 5 24 24 C 1.38986 * 133.24317 * 180.02562 * 23 22 6 25 25 C 1.37843 * 119.84819 * 180.25429 * 24 23 22 26 26 C 1.50708 * 119.62411 * 179.72204 * 25 24 23 27 27 H 1.09000 * 109.47371 * 90.00727 * 1 2 3 28 28 H 1.09008 * 109.47295 * 210.00513 * 1 2 3 29 29 H 1.09000 * 109.47218 * 330.00063 * 1 2 3 30 30 H 1.07995 * 120.14139 * 0.03835 * 3 2 1 31 31 H 1.08004 * 126.95874 * 359.95785 * 5 4 3 32 32 H 1.09004 * 109.46515 * 84.00790 * 10 9 7 33 33 H 1.08995 * 109.46941 * 204.01080 * 10 9 7 34 34 H 1.09000 * 109.46778 * 324.01072 * 10 9 7 35 35 H 1.08999 * 109.47463 * 210.00286 * 11 9 7 36 36 H 1.09009 * 109.46774 * 329.99898 * 11 9 7 37 37 H 1.08999 * 109.47077 * 300.00556 * 12 11 9 38 38 H 1.08997 * 109.46966 * 59.99914 * 12 11 9 39 39 H 0.96998 * 120.00506 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99325 * 180.02562 * 17 16 14 41 41 H 1.07992 * 120.08005 * 359.97433 * 24 23 22 42 42 H 1.09002 * 109.46831 * 90.00393 * 26 25 24 43 43 H 1.09005 * 109.46745 * 209.99711 * 26 25 24 44 44 H 1.08998 * 109.46924 * 330.00058 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6030 2.2319 -0.0002 6 6 5.8001 1.5906 -0.0005 7 6 7.1132 2.2508 -0.0009 8 8 7.1867 3.4588 -0.1252 9 7 8.2360 1.5180 0.1365 10 6 8.1524 0.0575 0.2154 11 6 9.5400 2.1819 0.2070 12 6 9.8735 2.4975 1.6665 13 7 11.1773 3.1619 1.7368 14 6 11.6879 3.5412 2.9495 15 1 11.1292 3.3510 3.8540 16 6 12.9230 4.1712 3.0161 17 7 13.6035 4.4035 1.9138 18 14 13.6191 4.6893 4.6703 19 1 13.7790 3.4937 5.5365 20 1 14.9411 5.3356 4.4706 21 1 12.6910 5.6500 5.3190 22 8 5.6021 0.2556 -0.0016 23 6 4.2865 -0.0343 -0.0025 24 6 3.5745 -1.2279 -0.0033 25 6 2.1963 -1.2046 -0.0096 26 6 1.4294 -2.5019 -0.0167 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6444 2.1207 0.0006 31 1 4.4382 3.2993 -0.0001 32 1 8.1104 -0.3589 -0.7911 33 1 9.0307 -0.3292 0.7323 34 1 7.2540 -0.2259 0.7637 35 1 10.3051 1.5249 -0.2066 36 1 9.5076 3.1082 -0.3669 37 1 9.1084 3.1545 2.0801 38 1 9.9058 1.5713 2.2402 39 1 11.6792 3.3324 0.9245 40 1 14.4668 4.8434 1.9604 41 1 4.0998 -2.1715 -0.0036 42 1 1.2397 -2.8175 1.0092 43 1 0.4807 -2.3602 -0.5345 44 1 2.0130 -3.2661 -0.5301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691558680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:07 Heat of formation + Delta-G solvation = -11.428977 kcal Electronic energy + Delta-G solvation = -25273.433433 eV Core-core repulsion = 21577.903683 eV Total energy + Delta-G solvation = -3695.529750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64360 -40.97129 -39.59522 -37.60126 -36.20937 -34.42188 -33.57490 -33.12952 -32.10817 -30.18632 -28.21427 -27.92682 -27.44150 -25.78517 -24.10340 -23.20005 -22.49167 -22.44734 -20.78516 -19.30501 -18.73890 -18.35269 -17.73228 -17.34879 -16.73033 -16.38590 -16.19193 -16.13774 -15.48397 -15.22749 -15.16325 -15.04369 -14.88939 -14.60644 -14.37543 -14.11339 -13.93199 -13.56910 -13.31671 -13.11651 -13.07679 -12.97101 -12.86768 -12.76737 -12.43177 -12.39785 -12.26977 -12.18365 -11.91102 -11.88981 -11.54696 -11.20466 -10.99500 -9.96039 -9.42648 -9.21042 -9.09495 -7.99327 -5.30611 -0.55171 0.28315 0.71400 1.24841 1.45392 1.49560 1.55687 1.79076 1.95202 2.54169 2.58521 3.11152 3.33571 3.54845 3.78863 3.80911 3.94261 3.97382 4.06872 4.10312 4.14496 4.23344 4.27999 4.43068 4.49643 4.59547 4.68206 4.73445 4.75069 4.85308 4.86765 4.89379 4.90672 5.00789 5.07216 5.16362 5.22156 5.27587 5.30471 5.33260 5.44168 5.54580 5.64435 5.97544 6.12425 6.21616 6.74939 7.28128 7.98360 8.24803 9.23593 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.029147 B = 0.002194 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.424754 B =12760.751332 C =12856.838625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.068 4.068 4 C -0.165 4.165 5 C -0.112 4.112 6 C -0.040 4.040 7 C 0.589 3.411 8 O -0.554 6.554 9 N -0.596 5.596 10 C 0.071 3.929 11 C 0.121 3.879 12 C 0.148 3.852 13 N -0.741 5.741 14 C -0.254 4.254 15 H 0.073 0.927 16 C -0.073 4.073 17 N -0.966 5.966 18 Si 0.979 3.021 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.280 1.280 22 O -0.177 6.177 23 C 0.045 3.955 24 C -0.120 4.120 25 C -0.045 4.045 26 C -0.116 4.116 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.172 0.828 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.001 0.999 38 H 0.032 0.968 39 H 0.377 0.623 40 H 0.254 0.746 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.941 -17.784 -6.600 35.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.133 4.133 6 C -0.089 4.089 7 C 0.377 3.623 8 O -0.434 6.434 9 N -0.327 5.327 10 C -0.070 4.070 11 C -0.002 4.002 12 C 0.020 3.980 13 N -0.385 5.385 14 C -0.385 4.385 15 H 0.091 0.909 16 C -0.265 4.265 17 N -0.616 5.616 18 Si 0.807 3.193 19 H -0.199 1.199 20 H -0.217 1.217 21 H -0.206 1.206 22 O -0.080 6.080 23 C -0.003 4.003 24 C -0.138 4.138 25 C -0.045 4.045 26 C -0.172 4.172 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.163 0.837 31 H 0.189 0.811 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.019 0.981 38 H 0.050 0.950 39 H 0.209 0.791 40 H 0.063 0.937 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.651 -17.377 -6.491 34.975 hybrid contribution 1.150 1.036 0.501 1.627 sum -28.501 -16.341 -5.990 33.395 Atomic orbital electron populations 1.20883 0.88236 1.04197 1.03506 1.19805 0.98122 0.91563 1.01149 1.20500 0.90276 0.99801 0.98007 1.20038 0.95443 0.91975 1.09109 1.22937 0.89552 1.00700 1.00112 1.21553 0.94876 0.81366 1.11116 1.17122 0.82375 0.85735 0.77087 1.90879 1.86096 1.14297 1.52148 1.47773 1.05532 1.09060 1.70294 1.22282 1.04519 0.76408 1.03786 1.21525 0.83285 0.98805 0.96587 1.20949 0.86790 0.94964 0.95310 1.42347 1.18742 1.71185 1.06233 1.19545 1.00800 1.31293 0.86909 0.90927 1.25646 0.97981 1.01970 1.00943 1.69809 1.14947 1.48870 1.27967 0.85137 0.77059 0.78147 0.78933 1.19943 1.21674 1.20637 1.84257 1.24540 1.22529 1.76666 1.20264 0.81227 0.96593 1.02228 1.20136 0.93059 0.94662 1.05975 1.20046 0.91780 0.96899 0.95809 1.20972 1.00375 0.91927 1.03927 0.89937 0.89553 0.90812 0.83684 0.81065 0.90337 0.88815 0.89496 0.87632 0.91170 0.98074 0.95037 0.79064 0.93721 0.82868 0.89387 0.89280 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.15 71.24 0.65 -0.08 16 2 C -0.11 -1.40 5.85 -20.10 -0.12 -1.52 16 3 C -0.07 -1.17 9.68 22.24 0.22 -0.95 16 4 C -0.16 -3.80 6.38 -20.23 -0.13 -3.92 16 5 C -0.11 -2.99 10.81 23.79 0.26 -2.74 16 6 C -0.04 -1.16 6.73 24.00 0.16 -1.00 16 7 C 0.59 20.37 7.65 86.53 0.66 21.03 16 8 O -0.55 -23.31 16.39 -4.23 -0.07 -23.38 16 9 N -0.60 -18.60 2.87 -851.15 -2.45 -21.05 16 10 C 0.07 1.59 9.60 127.77 1.23 2.82 16 11 C 0.12 4.34 5.52 86.38 0.48 4.81 16 12 C 0.15 6.49 6.58 86.38 0.57 7.06 16 13 N -0.74 -39.96 5.60 -343.46 -1.92 -41.88 16 14 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 15 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 16 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 17 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 18 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 O -0.18 -4.47 7.12 -13.03 -0.09 -4.56 16 23 C 0.04 1.01 7.41 23.07 0.17 1.18 16 24 C -0.12 -1.95 9.70 22.36 0.22 -1.73 16 25 C -0.05 -0.57 5.88 -19.82 -0.12 -0.69 16 26 C -0.12 -0.63 9.15 71.24 0.65 0.02 16 27 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.32 6.69 -2.38 -0.02 0.30 16 29 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.09 1.90 5.38 -2.39 -0.01 1.89 16 35 H 0.11 3.31 8.07 -2.39 -0.02 3.29 16 36 H 0.07 2.81 7.38 -2.38 -0.02 2.79 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.38 21.12 7.67 -92.71 -0.71 20.41 16 40 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.09 0.26 6.69 -2.38 -0.02 0.24 16 44 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 Total: -1.00 -75.56 368.57 4.29 -71.27 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.31 Total: 23.95 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.20 Total: 6.39 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -4.09 Total: -122.96 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.16 Total: -27.94 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -75.56 4.29 -71.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691558680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds