Wall clock time and date at job start Tue Mar 31 2020 11:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47477 * 2 1 4 4 C 1.53009 * 109.47056 * 120.00046 * 2 1 3 5 5 N 1.46500 * 109.47007 * 64.99643 * 4 2 1 6 6 C 1.46489 * 120.00317 * 269.99865 * 5 4 2 7 7 C 1.50698 * 109.47581 * 270.00369 * 6 5 4 8 8 H 1.07999 * 119.99718 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00265 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00007 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00179 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47437 * 89.99497 * 11 9 7 13 13 H 1.48500 * 109.47126 * 209.99872 * 11 9 7 14 14 H 1.48507 * 109.46818 * 329.99820 * 11 9 7 15 15 C 1.34775 * 119.99879 * 90.00182 * 5 4 2 16 16 O 1.21282 * 120.00412 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99974 * 359.97438 * 15 5 4 18 18 O 1.42900 * 109.47033 * 179.97438 * 17 15 5 19 19 C 1.35716 * 116.99837 * 180.02562 * 18 17 15 20 20 C 1.38646 * 120.14777 * 359.95108 * 19 18 17 21 21 C 1.38106 * 120.08725 * 180.02562 * 20 19 18 22 22 C 1.38515 * 120.39445 * 0.02562 * 21 20 19 23 23 C 1.37816 * 120.29817 * 0.02562 * 22 21 20 24 24 C 1.39720 * 119.89778 * 359.97438 * 23 22 21 25 25 C 1.43209 * 120.19001 * 180.02562 * 24 23 22 26 26 N 8.12636 * 118.88726 * 193.06071 * 2 1 3 27 27 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47385 * 300.00192 * 1 2 3 29 29 H 1.09000 * 109.46895 * 59.99902 * 1 2 3 30 30 H 1.09003 * 109.47385 * 239.99808 * 2 1 3 31 31 H 1.09002 * 109.47279 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47139 * 299.99949 * 3 2 1 33 33 H 1.09002 * 109.47469 * 59.99712 * 3 2 1 34 34 H 1.09001 * 109.46854 * 304.99611 * 4 2 1 35 35 H 1.09000 * 109.47194 * 185.00095 * 4 2 1 36 36 H 1.09010 * 109.47353 * 30.00345 * 6 5 4 37 37 H 1.09004 * 109.47540 * 149.99963 * 6 5 4 38 38 H 0.97001 * 119.99820 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47134 * 60.00038 * 17 15 5 40 40 H 1.09000 * 109.47231 * 299.99803 * 17 15 5 41 41 H 1.07996 * 119.95546 * 0.05194 * 20 19 18 42 42 H 1.07997 * 119.79983 * 180.27761 * 21 20 19 43 43 H 1.07998 * 119.84736 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.05103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1906 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2076 8 1 1.5507 -2.8645 3.6566 9 6 -0.4984 -3.3811 3.9575 10 7 -0.3264 -3.7088 5.2195 11 14 -2.1920 -3.5138 3.1807 12 1 -2.3637 -4.8679 2.5956 13 1 -3.2311 -3.2869 4.2170 14 1 -2.3276 -2.4919 2.1117 15 6 2.4713 -3.0331 0.6117 16 8 2.1507 -4.2018 0.5634 17 6 3.7856 -2.5875 0.0241 18 8 4.4683 -3.7159 -0.5261 19 6 5.6773 -3.4857 -1.0983 20 6 6.1983 -2.2014 -1.1322 21 6 7.4284 -1.9684 -1.7153 22 6 8.1500 -3.0126 -2.2701 23 6 7.6468 -4.2954 -2.2462 24 6 6.4036 -4.5450 -1.6595 25 6 5.8750 -5.8756 -1.6307 26 7 5.4557 -6.9311 -1.6079 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2953 36 1 -0.3486 -1.7531 1.6919 37 1 0.0041 -3.4298 1.2093 38 1 -1.0790 -4.0189 5.7470 39 1 4.3988 -2.1377 0.8050 40 1 3.6025 -1.8546 -0.7616 41 1 5.6418 -1.3821 -0.7018 42 1 7.8320 -0.9669 -1.7351 43 1 9.1108 -2.8203 -2.7241 44 1 8.2130 -5.1065 -2.6796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:08 Heat of formation + Delta-G solvation = -16.903758 kcal Electronic energy + Delta-G solvation = -26142.014487 eV Core-core repulsion = 22446.247332 eV Total energy + Delta-G solvation = -3695.767154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69202 -39.36559 -37.66405 -36.48965 -36.29325 -33.71347 -32.41498 -31.74497 -30.65781 -29.43782 -27.41617 -27.05907 -25.63486 -24.14670 -23.01806 -21.92316 -20.44986 -19.60915 -18.65761 -17.88704 -17.06871 -16.72749 -16.32397 -16.00833 -15.61018 -15.22226 -14.70950 -14.62264 -14.54845 -14.10550 -13.92072 -13.53366 -13.25601 -13.17714 -12.93729 -12.73154 -12.56432 -12.41788 -12.31862 -12.24656 -11.91299 -11.85149 -11.63479 -11.40504 -11.37727 -11.15974 -11.06443 -10.72664 -10.63725 -10.42905 -10.14905 -9.57637 -9.35221 -9.16282 -8.61373 -8.54703 -7.84023 -6.11760 -4.10972 0.54521 1.03887 2.60385 2.77019 2.86619 3.09877 3.26619 3.32126 3.35455 3.69857 3.80002 3.83186 4.36505 4.45188 4.52793 4.70925 4.72026 4.88459 4.91159 4.96974 5.00690 5.04263 5.13347 5.19467 5.22968 5.43484 5.50017 5.62701 5.69205 5.83196 5.88592 5.92469 5.94801 5.97007 6.06245 6.11126 6.28560 6.34113 6.43266 6.63785 6.85474 7.00670 7.22383 7.56569 7.59776 8.05595 8.41567 8.77686 8.91500 9.47802 11.01558 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003769 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.088230 B = 7426.362763 C = 8865.853223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.110 3.890 5 N -0.584 5.584 6 C 0.215 3.785 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.508 3.492 16 O -0.513 6.513 17 C 0.039 3.961 18 O -0.280 6.280 19 C 0.182 3.818 20 C -0.214 4.214 21 C -0.048 4.048 22 C -0.164 4.164 23 C -0.032 4.032 24 C -0.061 4.061 25 C 0.257 3.743 26 N -0.410 5.410 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.122 12.896 -15.746 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.317 5.317 6 C 0.095 3.905 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.293 3.707 16 O -0.387 6.387 17 C -0.039 4.039 18 O -0.190 6.190 19 C 0.132 3.868 20 C -0.232 4.232 21 C -0.067 4.067 22 C -0.183 4.183 23 C -0.053 4.053 24 C -0.065 4.065 25 C -0.058 4.058 26 N -0.086 5.086 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.039 10.357 -15.516 23.347 hybrid contribution -0.747 0.647 -0.070 0.991 sum 13.292 11.004 -15.586 23.253 Atomic orbital electron populations 1.21947 0.94682 1.02832 1.01378 1.21625 0.97222 0.96137 0.98620 1.21781 1.00622 0.95683 1.02080 1.21674 0.99252 0.81848 0.98592 1.47793 1.21078 1.06396 1.56443 1.19821 0.79989 0.95963 0.94689 1.21314 0.97495 1.44941 0.93263 0.90716 1.24839 0.98862 0.94481 0.94694 1.69892 1.31680 1.44456 1.07341 0.86892 0.84318 0.79421 0.79332 1.19862 1.20996 1.18971 1.19659 0.84689 0.86562 0.79817 1.90759 1.74055 1.16996 1.56912 1.22832 0.94023 0.88003 0.99067 1.86216 1.28257 1.34877 1.69676 1.19091 0.84751 0.92677 0.90322 1.21266 0.99211 0.95394 1.07364 1.21178 0.92784 0.99580 0.93161 1.20972 1.01374 0.92119 1.03786 1.21027 0.91834 0.97882 0.94516 1.15325 0.96627 0.85226 1.09336 1.25293 0.93877 0.92574 0.94080 1.81226 1.07037 1.12122 1.08177 0.91637 0.92275 0.93252 0.91532 0.92769 0.92649 0.92251 0.89093 0.91496 0.94192 0.94624 0.92504 0.88800 0.89013 0.84293 0.84922 0.84841 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.18 37.16 0.30 -1.64 16 2 C -0.12 -1.31 3.12 -90.62 -0.28 -1.59 16 3 C -0.14 -1.21 9.19 37.15 0.34 -0.87 16 4 C 0.11 1.53 4.70 -4.04 -0.02 1.51 16 5 N -0.58 -11.22 2.28 -175.06 -0.40 -11.61 16 6 C 0.22 5.06 3.30 -5.20 -0.02 5.04 16 7 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 11 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 15 C 0.51 10.15 7.75 -10.98 -0.09 10.06 16 16 O -0.51 -13.13 16.08 -14.36 -0.23 -13.36 16 17 C 0.04 0.54 3.77 36.01 0.14 0.68 16 18 O -0.28 -4.47 9.10 -38.76 -0.35 -4.82 16 19 C 0.18 2.20 6.69 -38.71 -0.26 1.94 16 20 C -0.21 -1.79 9.03 -39.48 -0.36 -2.14 16 21 C -0.05 -0.30 10.03 -39.53 -0.40 -0.69 16 22 C -0.16 -0.99 10.02 -39.63 -0.40 -1.38 16 23 C -0.03 -0.25 9.76 -39.18 -0.38 -0.63 16 24 C -0.06 -0.71 5.75 -106.69 -0.61 -1.33 16 25 C 0.26 3.91 14.87 -22.47 -0.33 3.58 16 26 N -0.41 -7.36 18.54 41.84 0.78 -6.58 16 27 H 0.06 1.01 5.89 -51.93 -0.31 0.71 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 36 H 0.04 0.88 5.03 -51.92 -0.26 0.62 16 37 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.09 1.06 6.92 -51.93 -0.36 0.70 16 40 H 0.09 0.94 6.78 -51.93 -0.35 0.59 16 41 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -37.19 370.60 -7.39 -44.58 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.07 Total: -3.02 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.80 Total: -0.77 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 1.15 Total: -44.93 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.58 Total: -18.18 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.19 -7.39 -44.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.679 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds