Wall clock time and date at job start Tue Mar 31 2020 11:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47477 * 2 1 4 4 C 1.53009 * 109.47056 * 120.00046 * 2 1 3 5 5 N 1.46500 * 109.47007 * 64.99643 * 4 2 1 6 6 C 1.46489 * 120.00317 * 269.99865 * 5 4 2 7 7 C 1.50698 * 109.47581 * 270.00369 * 6 5 4 8 8 H 1.07999 * 119.99718 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00265 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00007 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00179 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47437 * 89.99497 * 11 9 7 13 13 H 1.48500 * 109.47126 * 209.99872 * 11 9 7 14 14 H 1.48507 * 109.46818 * 329.99820 * 11 9 7 15 15 C 1.34775 * 119.99879 * 90.00182 * 5 4 2 16 16 O 1.21282 * 120.00412 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99974 * 359.97438 * 15 5 4 18 18 O 1.42900 * 109.47033 * 179.97438 * 17 15 5 19 19 C 1.35716 * 116.99837 * 180.02562 * 18 17 15 20 20 C 1.38646 * 120.14777 * 359.95108 * 19 18 17 21 21 C 1.38106 * 120.08725 * 180.02562 * 20 19 18 22 22 C 1.38515 * 120.39445 * 0.02562 * 21 20 19 23 23 C 1.37816 * 120.29817 * 0.02562 * 22 21 20 24 24 C 1.39720 * 119.89778 * 359.97438 * 23 22 21 25 25 C 1.43209 * 120.19001 * 180.02562 * 24 23 22 26 26 N 8.12636 * 118.88726 * 193.06071 * 2 1 3 27 27 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47385 * 300.00192 * 1 2 3 29 29 H 1.09000 * 109.46895 * 59.99902 * 1 2 3 30 30 H 1.09003 * 109.47385 * 239.99808 * 2 1 3 31 31 H 1.09002 * 109.47279 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47139 * 299.99949 * 3 2 1 33 33 H 1.09002 * 109.47469 * 59.99712 * 3 2 1 34 34 H 1.09001 * 109.46854 * 304.99611 * 4 2 1 35 35 H 1.09000 * 109.47194 * 185.00095 * 4 2 1 36 36 H 1.09010 * 109.47353 * 30.00345 * 6 5 4 37 37 H 1.09004 * 109.47540 * 149.99963 * 6 5 4 38 38 H 0.97001 * 119.99820 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47134 * 60.00038 * 17 15 5 40 40 H 1.09000 * 109.47231 * 299.99803 * 17 15 5 41 41 H 1.07996 * 119.95546 * 0.05194 * 20 19 18 42 42 H 1.07997 * 119.79983 * 180.27761 * 21 20 19 43 43 H 1.07998 * 119.84736 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.05103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1906 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2076 8 1 1.5507 -2.8645 3.6566 9 6 -0.4984 -3.3811 3.9575 10 7 -0.3264 -3.7088 5.2195 11 14 -2.1920 -3.5138 3.1807 12 1 -2.3637 -4.8679 2.5956 13 1 -3.2311 -3.2869 4.2170 14 1 -2.3276 -2.4919 2.1117 15 6 2.4713 -3.0331 0.6117 16 8 2.1507 -4.2018 0.5634 17 6 3.7856 -2.5875 0.0241 18 8 4.4683 -3.7159 -0.5261 19 6 5.6773 -3.4857 -1.0983 20 6 6.1983 -2.2014 -1.1322 21 6 7.4284 -1.9684 -1.7153 22 6 8.1500 -3.0126 -2.2701 23 6 7.6468 -4.2954 -2.2462 24 6 6.4036 -4.5450 -1.6595 25 6 5.8750 -5.8756 -1.6307 26 7 5.4557 -6.9311 -1.6079 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2953 36 1 -0.3486 -1.7531 1.6919 37 1 0.0041 -3.4298 1.2093 38 1 -1.0790 -4.0189 5.7470 39 1 4.3988 -2.1377 0.8050 40 1 3.6025 -1.8546 -0.7616 41 1 5.6418 -1.3821 -0.7018 42 1 7.8320 -0.9669 -1.7351 43 1 9.1108 -2.8203 -2.7241 44 1 8.2130 -5.1065 -2.6796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:07 Heat of formation + Delta-G solvation = -41.294933 kcal Electronic energy + Delta-G solvation = -26143.072167 eV Core-core repulsion = 22446.247332 eV Total energy + Delta-G solvation = -3696.824835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66352 -40.64800 -38.59703 -37.81102 -37.41638 -35.36388 -34.25013 -32.50242 -31.60504 -30.79229 -28.78811 -27.94009 -26.90497 -24.89875 -24.48737 -23.04898 -21.46480 -20.56822 -19.92350 -19.18203 -18.77804 -17.94886 -17.42473 -17.29760 -16.72915 -16.29866 -15.88856 -15.75651 -15.54116 -15.26855 -15.03572 -14.90463 -14.58571 -14.35624 -14.13382 -13.96566 -13.79105 -13.72202 -13.55261 -13.30855 -13.13981 -12.94609 -12.68181 -12.52335 -12.50744 -12.18847 -12.16719 -12.06090 -11.96813 -11.79500 -11.57797 -11.50429 -10.85745 -10.77032 -9.99130 -9.46670 -9.28128 -8.37578 -6.41980 -0.15474 0.42711 1.26882 1.32574 1.39320 1.52317 1.62587 1.64128 1.97427 2.26601 2.54778 2.90142 2.94625 2.97079 3.39634 3.75925 3.94774 3.96845 4.00780 4.07873 4.09384 4.27305 4.32092 4.47589 4.50414 4.62120 4.69147 4.72155 4.85421 4.92122 4.92411 4.96848 5.09194 5.16635 5.22933 5.32019 5.38326 5.42736 5.43123 5.52859 5.53999 5.64288 5.76929 6.16335 6.22530 6.49356 6.57919 6.59931 7.16256 7.29993 8.79344 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003769 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.088230 B = 7426.362763 C = 8865.853223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.101 3.899 5 N -0.586 5.586 6 C 0.227 3.773 7 C -0.537 4.537 8 H 0.031 0.969 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.940 3.060 12 H -0.282 1.282 13 H -0.272 1.272 14 H -0.234 1.234 15 C 0.493 3.507 16 O -0.588 6.588 17 C 0.053 3.947 18 O -0.327 6.327 19 C 0.154 3.846 20 C -0.210 4.210 21 C -0.032 4.032 22 C -0.150 4.150 23 C -0.028 4.028 24 C -0.096 4.096 25 C 0.276 3.724 26 N -0.483 5.483 27 H 0.032 0.968 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.268 0.732 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.401 17.465 -18.309 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.128 4.128 3 C -0.195 4.195 4 C -0.021 4.021 5 N -0.317 5.317 6 C 0.105 3.895 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.763 3.237 12 H -0.209 1.209 13 H -0.197 1.197 14 H -0.157 1.157 15 C 0.281 3.719 16 O -0.468 6.468 17 C -0.024 4.024 18 O -0.240 6.240 19 C 0.105 3.895 20 C -0.229 4.229 21 C -0.050 4.050 22 C -0.168 4.168 23 C -0.048 4.048 24 C -0.100 4.100 25 C -0.037 4.037 26 N -0.160 5.160 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.189 0.811 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.358 15.009 -18.098 28.642 hybrid contribution -1.254 -0.678 0.726 1.600 sum 15.104 14.330 -17.372 27.116 Atomic orbital electron populations 1.21981 0.96274 1.00840 1.02229 1.21577 0.95890 0.98014 0.97273 1.21745 1.02216 0.92986 1.02551 1.22092 1.01715 0.78577 0.99688 1.47853 1.19627 1.08838 1.55410 1.19425 0.82999 0.95675 0.91431 1.21595 0.95654 1.44632 0.95655 0.95032 1.25798 1.03564 0.94061 0.95117 1.70041 1.33225 1.46009 1.09090 0.85830 0.78888 0.79617 0.79365 1.20857 1.19657 1.15700 1.20864 0.86555 0.85574 0.78875 1.90715 1.76021 1.20179 1.59870 1.22782 0.90650 0.87953 1.01003 1.86143 1.30449 1.36360 1.71007 1.19399 0.83905 0.94478 0.91702 1.21587 1.00182 0.94001 1.07105 1.21722 0.91312 1.01475 0.90492 1.21470 1.02370 0.90842 1.02095 1.21326 0.90192 0.99777 0.93498 1.15730 0.98655 0.83402 1.12260 1.26131 0.92323 0.93167 0.92116 1.81206 1.09327 1.14383 1.11079 0.94930 0.92739 0.91172 0.90435 0.90231 0.91405 0.92613 0.90494 0.87640 0.92022 0.97330 0.92280 0.85729 0.84589 0.81814 0.80782 0.81123 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.18 71.98 0.59 -3.11 16 2 C -0.11 -2.07 3.12 -10.79 -0.03 -2.10 16 3 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 4 C 0.10 2.58 4.70 86.38 0.41 2.99 16 5 N -0.59 -22.70 2.28 -826.14 -1.88 -24.58 16 6 C 0.23 11.00 3.30 85.63 0.28 11.28 16 7 C -0.54 -31.79 9.94 25.60 0.25 -31.54 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 9 C 0.01 0.77 5.47 84.65 0.46 1.23 16 10 N -0.94 -60.46 13.96 21.45 0.30 -60.16 16 11 Si 0.94 45.28 27.47 68.60 1.88 47.16 16 12 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.23 -9.99 6.54 99.48 0.65 -9.34 16 15 C 0.49 20.18 7.75 87.66 0.68 20.86 16 16 O -0.59 -32.19 16.08 16.00 0.26 -31.93 16 17 C 0.05 1.38 3.77 71.24 0.27 1.65 16 18 O -0.33 -10.51 9.10 -71.34 -0.65 -11.16 16 19 C 0.15 3.48 6.69 22.83 0.15 3.64 16 20 C -0.21 -2.54 9.03 22.34 0.20 -2.34 16 21 C -0.03 -0.19 10.03 22.30 0.22 0.03 16 22 C -0.15 -0.99 10.02 22.24 0.22 -0.77 16 23 C -0.03 -0.36 9.76 22.53 0.22 -0.14 16 24 C -0.10 -2.20 5.75 -21.21 -0.12 -2.33 16 25 C 0.28 8.94 14.87 88.33 1.31 10.26 16 26 N -0.48 -18.83 18.54 19.01 0.35 -18.48 16 27 H 0.03 0.97 5.89 -2.39 -0.01 0.96 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.36 7.30 -2.39 -0.02 1.34 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 35 H 0.11 1.87 6.44 -2.39 -0.02 1.85 16 36 H 0.06 2.72 5.03 -2.38 -0.01 2.71 16 37 H 0.01 0.47 6.85 -2.38 -0.02 0.45 16 38 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.13 2.39 6.92 -2.39 -0.02 2.38 16 40 H 0.14 2.23 6.78 -2.39 -0.02 2.21 16 41 H 0.16 1.07 6.30 -2.91 -0.02 1.06 16 42 H 0.17 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.17 -0.04 8.06 -2.91 -0.02 -0.07 16 44 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -93.87 370.60 7.00 -86.87 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 0.96 Total: 3.63 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.78 Total: 8.64 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -1.23 Total: -103.22 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.39 Total: -43.09 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -93.87 7.00 -86.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.576 kcal (2) G-P(sol) polarization free energy of solvation -93.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds