Wall clock time and date at job start Tue Mar 31 2020 11:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46804 * 2 1 4 4 C 1.53000 * 109.47208 * 120.00223 * 2 1 3 5 5 N 1.46503 * 109.46826 * 65.00080 * 4 2 1 6 6 C 1.46502 * 119.99847 * 269.99674 * 5 4 2 7 7 C 1.50702 * 109.46810 * 270.00100 * 6 5 4 8 8 H 1.07997 * 120.00654 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99375 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99296 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00241 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47496 * 89.99817 * 11 9 7 13 13 H 1.48504 * 109.46964 * 210.00046 * 11 9 7 14 14 H 1.48501 * 109.47205 * 329.99289 * 11 9 7 15 15 C 1.34781 * 119.99909 * 89.99985 * 5 4 2 16 16 O 1.21281 * 119.99369 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99803 * 359.97438 * 15 5 4 18 18 C 1.50705 * 109.46578 * 179.97438 * 17 15 5 19 19 N 1.29740 * 126.29138 * 269.99414 * 18 17 15 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46825 * 299.99157 * 1 2 3 29 29 H 1.08998 * 109.47189 * 59.99633 * 1 2 3 30 30 H 1.09001 * 109.46436 * 240.00484 * 2 1 3 31 31 H 1.08995 * 109.46802 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47547 * 300.00148 * 3 2 1 33 33 H 1.09009 * 109.46934 * 60.00414 * 3 2 1 34 34 H 1.08997 * 109.47038 * 305.00092 * 4 2 1 35 35 H 1.08994 * 109.47121 * 184.99924 * 4 2 1 36 36 H 1.08995 * 109.47155 * 29.99950 * 6 5 4 37 37 H 1.08996 * 109.47019 * 150.00559 * 6 5 4 38 38 H 0.97003 * 119.99780 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47274 * 60.00609 * 17 15 5 40 40 H 1.08996 * 109.47109 * 299.99645 * 17 15 5 41 41 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 44 44 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7611 7 6 0.5718 -2.9410 3.2074 8 1 1.5509 -2.8640 3.6566 9 6 -0.4981 -3.3814 3.9573 10 7 -0.3261 -3.7082 5.2196 11 14 -2.1917 -3.5139 3.1806 12 1 -2.3635 -4.8679 2.5955 13 1 -3.2308 -3.2871 4.2170 14 1 -2.3275 -2.4919 2.1118 15 6 2.4716 -3.0331 0.6113 16 8 2.1509 -4.2017 0.5631 17 6 3.7858 -2.5874 0.0238 18 6 4.5058 -3.7773 -0.5566 19 7 5.3405 -4.5495 0.0681 20 8 5.8082 -5.5552 -0.8083 21 6 5.2377 -5.3926 -2.0190 22 6 5.3371 -6.0805 -3.2225 23 6 4.6085 -5.6599 -4.3138 24 6 3.7752 -4.5537 -4.2231 25 6 3.6633 -3.8638 -3.0492 26 6 4.3933 -4.2737 -1.9311 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6055 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2951 36 1 -0.3483 -1.7533 1.6919 37 1 0.0044 -3.4298 1.2091 38 1 -1.0787 -4.0184 5.7471 39 1 4.3991 -2.1376 0.8047 40 1 3.6027 -1.8544 -0.7618 41 1 5.9841 -6.9416 -3.3024 42 1 4.6872 -6.1953 -5.2485 43 1 3.2137 -4.2335 -5.0883 44 1 3.0132 -3.0037 -2.9861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049932756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:57 Heat of formation + Delta-G solvation = 23.460743 kcal Electronic energy + Delta-G solvation = -26592.903845 eV Core-core repulsion = 22898.887026 eV Total energy + Delta-G solvation = -3694.016818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78570 -39.46535 -37.80639 -36.61625 -34.53425 -33.63874 -32.37337 -30.83262 -30.16284 -29.91801 -27.87796 -27.02816 -25.61481 -23.43478 -22.76999 -22.65783 -20.63489 -20.32513 -18.52919 -17.61842 -17.22016 -16.98934 -16.66852 -15.79444 -15.67095 -15.58810 -15.03221 -14.55584 -14.35897 -14.05583 -13.89833 -13.60143 -13.32107 -13.21095 -12.62870 -12.41025 -12.38689 -12.35419 -12.30613 -12.17292 -11.85516 -11.57902 -11.31648 -11.25387 -11.17964 -11.04587 -11.01467 -10.68541 -10.61718 -10.40508 -10.13434 -9.56048 -9.21768 -9.02288 -8.70922 -8.59903 -7.80077 -6.09865 -4.08752 0.55746 1.15912 2.00227 2.51702 3.14483 3.26561 3.32058 3.34642 3.43944 3.68529 4.02215 4.21241 4.37468 4.45683 4.73751 4.76112 4.91726 4.96729 4.99223 5.08549 5.14183 5.19367 5.22757 5.27069 5.36600 5.56496 5.64286 5.68451 5.72108 5.75676 5.95686 5.97513 5.99770 6.02370 6.07878 6.14218 6.18080 6.37195 6.45657 6.49622 6.67758 6.88325 7.24563 7.25646 7.58893 8.10421 8.43857 8.80003 8.94465 9.49715 11.03603 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.004152 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.378755 B = 6742.864956 C = 7681.530844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.110 3.890 5 N -0.585 5.585 6 C 0.214 3.786 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.514 3.486 16 O -0.528 6.528 17 C -0.078 4.078 18 C 0.159 3.841 19 N -0.272 5.272 20 O -0.093 6.093 21 C 0.084 3.916 22 C -0.128 4.128 23 C -0.065 4.065 24 C -0.153 4.153 25 C -0.035 4.035 26 C -0.181 4.181 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 7.180 -20.173 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.316 5.316 6 C 0.094 3.906 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.298 3.702 16 O -0.404 6.404 17 C -0.119 4.119 18 C -0.023 4.023 19 N -0.015 5.015 20 O -0.103 6.103 21 C 0.030 3.970 22 C -0.147 4.147 23 C -0.084 4.084 24 C -0.171 4.171 25 C -0.055 4.055 26 C -0.185 4.185 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.593 6.123 -18.866 21.616 hybrid contribution -1.312 0.033 -0.716 1.495 sum 7.281 6.156 -19.582 21.780 Atomic orbital electron populations 1.21954 0.94798 1.02754 1.01324 1.21606 0.97033 0.96110 0.98689 1.21785 1.00740 0.95713 1.01988 1.21665 0.99542 0.81761 0.98407 1.47835 1.21071 1.06532 1.56146 1.19799 0.80256 0.95828 0.94686 1.21332 0.97487 1.44754 0.93307 0.90729 1.24848 0.98820 0.94562 0.94692 1.69897 1.31632 1.44559 1.07329 0.86890 0.84400 0.79319 0.79329 1.19948 1.21023 1.18991 1.19761 0.84685 0.86286 0.79420 1.90742 1.74559 1.17142 1.57983 1.20401 0.95677 0.93345 1.02441 1.23841 0.92653 0.95014 0.90787 1.79926 1.14163 0.98331 1.09036 1.89158 1.58788 1.45484 1.16898 1.20311 0.93461 0.94838 0.88399 1.20031 1.04040 1.01715 0.88948 1.21101 0.94011 0.95634 0.97697 1.20765 1.01256 0.97068 0.98025 1.20446 0.95516 0.98874 0.90657 1.20650 1.04356 0.99093 0.94359 0.91672 0.92334 0.93316 0.91512 0.92693 0.92720 0.92303 0.89282 0.91211 0.94335 0.94732 0.92545 0.86357 0.86448 0.84486 0.84457 0.84921 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.18 37.16 0.30 -1.62 16 2 C -0.11 -1.30 3.12 -90.62 -0.28 -1.58 16 3 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 4 C 0.11 1.56 4.70 -4.04 -0.02 1.55 16 5 N -0.58 -11.22 2.28 -175.06 -0.40 -11.62 16 6 C 0.21 5.03 3.30 -5.19 -0.02 5.01 16 7 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 11 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 15 C 0.51 10.10 7.67 -10.99 -0.08 10.01 16 16 O -0.53 -13.07 15.61 5.56 0.09 -12.99 16 17 C -0.08 -1.11 4.85 -29.03 -0.14 -1.25 16 18 C 0.16 2.62 5.95 -80.12 -0.48 2.14 16 19 N -0.27 -5.08 12.81 34.91 0.45 -4.63 16 20 O -0.09 -1.65 12.06 7.68 0.09 -1.55 16 21 C 0.08 1.26 7.48 -38.47 -0.29 0.97 16 22 C -0.13 -1.42 10.07 -39.47 -0.40 -1.82 16 23 C -0.07 -0.58 10.02 -39.54 -0.40 -0.97 16 24 C -0.15 -1.42 9.97 -39.96 -0.40 -1.82 16 25 C -0.03 -0.40 10.05 -39.63 -0.40 -0.80 16 26 C -0.18 -2.68 6.32 -105.17 -0.67 -3.34 16 27 H 0.06 0.99 5.89 -51.93 -0.31 0.68 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.70 7.30 -51.93 -0.38 0.32 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 36 H 0.04 0.85 5.03 -51.93 -0.26 0.59 16 37 H 0.03 0.88 6.85 -51.93 -0.36 0.53 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.12 1.49 7.40 -51.93 -0.38 1.10 16 40 H 0.12 1.19 7.26 -51.93 -0.38 0.81 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -36.47 364.81 -7.74 -44.22 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.21 Total: -0.92 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.36 Total: -7.81 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.82 Total: -43.17 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.18 Total: -14.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.47 -7.74 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049932756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.677 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds