Wall clock time and date at job start Tue Mar 31 2020 10:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47205 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47260 * 14.23415 * 4 3 2 6 6 C 1.53002 * 109.46884 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46873 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.08993 * 109.47142 * 345.76651 * 1 2 3 28 28 H 1.09003 * 109.46878 * 105.76455 * 1 2 3 29 29 H 1.09002 * 109.46686 * 225.76246 * 1 2 3 30 30 H 1.09003 * 109.46878 * 254.23545 * 4 3 2 31 31 H 1.09002 * 109.47149 * 134.23488 * 4 3 2 32 32 H 1.08995 * 109.47213 * 59.99967 * 5 4 3 33 33 H 1.08996 * 109.46876 * 299.99717 * 5 4 3 34 34 H 1.08995 * 109.47518 * 59.99792 * 6 5 4 35 35 H 1.09002 * 109.47042 * 299.99777 * 6 5 4 36 36 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 37 37 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 38 38 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0018 0.0000 5 6 4.6293 -1.3959 -0.3547 6 6 6.1594 -1.3946 -0.3540 7 6 6.6630 -2.7712 -0.7040 8 8 5.8757 -3.6653 -0.9311 9 7 7.9882 -3.0086 -0.7646 10 6 8.4547 -4.2837 -1.0883 11 7 7.5913 -5.2538 -1.3396 12 6 7.9894 -6.4746 -1.6434 13 6 9.3327 -6.7861 -1.7167 14 6 10.2747 -5.7981 -1.4671 15 6 9.8274 -4.5227 -1.1510 16 8 10.7140 -3.5233 -0.8982 17 6 12.1024 -3.8529 -0.9753 18 6 12.9395 -2.6109 -0.6628 19 6 14.4036 -2.9586 -0.7435 20 1 14.7067 -3.9649 -0.9924 21 6 15.3562 -1.9924 -0.4987 22 7 14.9871 -0.7671 -0.1952 23 14 17.1710 -2.4232 -0.5994 24 1 17.3204 -3.8570 -0.9562 25 1 17.8222 -1.5840 -1.6372 26 1 17.8133 -2.1713 0.7156 27 1 -0.3633 0.9960 0.2527 28 1 -0.3633 -0.2792 -0.9891 29 1 -0.3633 -0.7170 0.7363 30 1 4.4811 0.2814 0.9891 31 1 4.4808 0.7191 -0.7363 32 1 4.2663 -1.6755 -1.3436 33 1 4.2667 -2.1131 0.3817 34 1 6.5221 -1.1152 0.6351 35 1 6.5224 -0.6773 -1.0901 36 1 8.6179 -2.2934 -0.5834 37 1 7.2540 -7.2413 -1.8378 38 1 9.6472 -7.7888 -1.9658 39 1 11.3312 -6.0162 -1.5185 40 1 12.3369 -4.2055 -1.9797 41 1 12.3305 -4.6364 -0.2526 42 1 12.7113 -1.8277 -1.3857 43 1 12.7050 -2.2579 0.3414 44 1 15.6572 -0.0873 -0.0233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185731334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:14 Heat of formation + Delta-G solvation = -4.715543 kcal Electronic energy + Delta-G solvation = -24400.219030 eV Core-core repulsion = 20704.980396 eV Total energy + Delta-G solvation = -3695.238634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87647 -39.33123 -37.79047 -35.95883 -34.77665 -33.49968 -33.48041 -31.66494 -30.73947 -29.93879 -28.93617 -26.78362 -25.43248 -23.88007 -22.89569 -22.13176 -20.94133 -20.12926 -18.37457 -17.59905 -17.28298 -16.58710 -16.21988 -16.17228 -15.66399 -15.65464 -14.91016 -14.75402 -14.58919 -14.23960 -14.07566 -13.93166 -13.92629 -13.52732 -13.49529 -12.90811 -12.56309 -12.51234 -12.42465 -12.02815 -11.93264 -11.75422 -11.11585 -11.06216 -11.02536 -10.69663 -10.68880 -10.23686 -10.06629 -9.96661 -9.89400 -9.78754 -9.41123 -9.21844 -9.01960 -8.54054 -7.66372 -6.19634 -4.24497 1.20602 1.44583 2.47049 2.52811 2.73035 2.93064 3.20692 3.27972 3.30937 3.52234 4.00221 4.01050 4.32550 4.37886 4.70472 4.78884 4.82128 4.94823 5.05523 5.16716 5.17433 5.18384 5.25707 5.31559 5.33398 5.36625 5.43530 5.44030 5.46683 5.73068 5.85143 5.88650 5.91422 6.05484 6.08035 6.18422 6.35923 6.52789 6.62949 7.27868 7.33407 7.46245 7.50959 7.62899 7.83902 8.07100 8.12884 8.36959 8.80958 9.40640 10.91824 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002258 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.244377 B =12399.369306 C =14408.940728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.182 4.182 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.503 3.497 8 O -0.482 6.482 9 N -0.653 5.653 10 C 0.328 3.672 11 N -0.444 5.444 12 C 0.074 3.926 13 C -0.160 4.160 14 C -0.148 4.148 15 C 0.067 3.933 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.026 3.974 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.424 0.576 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 -2.234 -0.550 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.182 4.182 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.289 3.711 8 O -0.352 6.352 9 N -0.302 5.302 10 C 0.095 3.905 11 N -0.159 5.159 12 C -0.082 4.082 13 C -0.182 4.182 14 C -0.175 4.175 15 C 0.015 3.985 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.262 0.738 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.886 -2.240 -0.561 22.007 hybrid contribution 2.568 -0.204 -0.044 2.576 sum -19.318 -2.443 -0.604 19.482 Atomic orbital electron populations 1.18833 0.84800 1.02845 1.02996 1.22412 0.93984 1.01551 1.02084 1.22333 0.93658 1.01201 1.01024 1.18719 0.84437 0.98181 1.03099 1.21277 0.92696 0.95785 1.03855 1.21705 0.97440 0.94412 1.04524 1.20874 0.81611 0.91070 0.77559 1.90791 1.54296 1.45709 1.44381 1.43556 1.08610 1.09747 1.68251 1.17849 0.85649 0.87179 0.99842 1.67625 1.35595 1.00096 1.12625 1.22411 0.94368 0.92715 0.98729 1.21890 0.93738 1.00148 1.02386 1.21613 1.01481 0.91833 1.02578 1.19609 0.89313 0.89666 0.99897 1.86097 1.18434 1.34055 1.84232 1.23396 0.75062 1.02331 1.00002 1.19133 0.92671 0.90902 0.98393 1.20990 0.90082 0.96625 1.48940 0.92278 1.24982 0.99469 0.94875 0.94791 1.69972 1.33997 1.02041 1.46647 0.86428 0.84505 0.78615 0.77827 1.19622 1.20797 1.20803 0.90365 0.90292 0.90292 0.89411 0.89410 0.90695 0.90702 0.88214 0.88223 0.73779 0.82662 0.84812 0.83758 0.92952 0.92950 0.95324 0.95330 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.25 10.32 34.37 0.35 0.11 16 2 C -0.20 -2.05 14.13 -37.12 -0.52 -2.58 16 3 C -0.18 -1.93 13.34 -37.12 -0.50 -2.43 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -0.94 4.46 -26.73 -0.12 -1.06 16 6 C -0.14 -1.25 5.70 -27.88 -0.16 -1.41 16 7 C 0.50 6.85 7.79 -10.99 -0.09 6.76 16 8 O -0.48 -8.32 14.24 5.56 0.08 -8.24 16 9 N -0.65 -9.28 5.39 -11.29 -0.06 -9.34 16 10 C 0.33 5.41 7.45 -154.43 -1.15 4.26 16 11 N -0.44 -7.47 7.88 -12.22 -0.10 -7.56 16 12 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 13 C -0.16 -2.01 10.10 -39.44 -0.40 -2.41 16 14 C -0.15 -2.16 9.14 -39.17 -0.36 -2.52 16 15 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 16 O -0.32 -5.73 9.39 -19.66 -0.18 -5.92 16 17 C 0.07 1.29 4.70 37.16 0.17 1.46 16 18 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 19 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 23 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 5.25 8.04 -40.82 -0.33 4.92 16 37 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.14 1.95 6.44 -52.49 -0.34 1.61 16 40 H 0.05 0.97 7.70 -51.93 -0.40 0.58 16 41 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -33.65 383.20 -9.22 -42.86 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.50 Total: 2.14 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.95 Total: -10.64 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.58 Total: -41.51 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.11 Total: -14.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.65 -9.22 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185731334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.148 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds