Wall clock time and date at job start Tue Mar 31 2020 10:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47205 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47260 * 14.23415 * 4 3 2 6 6 C 1.53002 * 109.46884 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46873 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.08993 * 109.47142 * 345.76651 * 1 2 3 28 28 H 1.09003 * 109.46878 * 105.76455 * 1 2 3 29 29 H 1.09002 * 109.46686 * 225.76246 * 1 2 3 30 30 H 1.09003 * 109.46878 * 254.23545 * 4 3 2 31 31 H 1.09002 * 109.47149 * 134.23488 * 4 3 2 32 32 H 1.08995 * 109.47213 * 59.99967 * 5 4 3 33 33 H 1.08996 * 109.46876 * 299.99717 * 5 4 3 34 34 H 1.08995 * 109.47518 * 59.99792 * 6 5 4 35 35 H 1.09002 * 109.47042 * 299.99777 * 6 5 4 36 36 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 37 37 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 38 38 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0018 0.0000 5 6 4.6293 -1.3959 -0.3547 6 6 6.1594 -1.3946 -0.3540 7 6 6.6630 -2.7712 -0.7040 8 8 5.8757 -3.6653 -0.9311 9 7 7.9882 -3.0086 -0.7646 10 6 8.4547 -4.2837 -1.0883 11 7 7.5913 -5.2538 -1.3396 12 6 7.9894 -6.4746 -1.6434 13 6 9.3327 -6.7861 -1.7167 14 6 10.2747 -5.7981 -1.4671 15 6 9.8274 -4.5227 -1.1510 16 8 10.7140 -3.5233 -0.8982 17 6 12.1024 -3.8529 -0.9753 18 6 12.9395 -2.6109 -0.6628 19 6 14.4036 -2.9586 -0.7435 20 1 14.7067 -3.9649 -0.9924 21 6 15.3562 -1.9924 -0.4987 22 7 14.9871 -0.7671 -0.1952 23 14 17.1710 -2.4232 -0.5994 24 1 17.3204 -3.8570 -0.9562 25 1 17.8222 -1.5840 -1.6372 26 1 17.8133 -2.1713 0.7156 27 1 -0.3633 0.9960 0.2527 28 1 -0.3633 -0.2792 -0.9891 29 1 -0.3633 -0.7170 0.7363 30 1 4.4811 0.2814 0.9891 31 1 4.4808 0.7191 -0.7363 32 1 4.2663 -1.6755 -1.3436 33 1 4.2667 -2.1131 0.3817 34 1 6.5221 -1.1152 0.6351 35 1 6.5224 -0.6773 -1.0901 36 1 8.6179 -2.2934 -0.5834 37 1 7.2540 -7.2413 -1.8378 38 1 9.6472 -7.7888 -1.9658 39 1 11.3312 -6.0162 -1.5185 40 1 12.3369 -4.2055 -1.9797 41 1 12.3305 -4.6364 -0.2526 42 1 12.7113 -1.8277 -1.3857 43 1 12.7050 -2.2579 0.3414 44 1 15.6572 -0.0873 -0.0233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185731334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:13 Heat of formation + Delta-G solvation = -23.685574 kcal Electronic energy + Delta-G solvation = -24401.041632 eV Core-core repulsion = 20704.980396 eV Total energy + Delta-G solvation = -3696.061236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03148 -40.47389 -39.09618 -36.71574 -35.91298 -35.43374 -34.21564 -32.90397 -32.30034 -30.94937 -29.96827 -27.50942 -27.16082 -25.11255 -24.10628 -23.19231 -22.43773 -21.19104 -19.61015 -18.88496 -18.37800 -18.01253 -17.43726 -17.25719 -16.86723 -16.80840 -16.43393 -15.93477 -15.75939 -15.23159 -15.08358 -14.85999 -14.69643 -14.35762 -14.32081 -14.25056 -14.14345 -13.64464 -13.33226 -13.28551 -13.22257 -12.77999 -12.76651 -12.50907 -12.43080 -11.87089 -11.85138 -11.70270 -11.62138 -11.41666 -11.30232 -10.67614 -10.60756 -10.57260 -10.40431 -10.16096 -8.85100 -8.25214 -6.37447 0.09233 0.28669 1.42769 1.43430 1.56008 1.68494 1.68720 1.78509 1.93981 2.11680 2.44890 2.87790 3.10260 3.32463 3.44220 3.69152 3.85747 3.97167 4.06588 4.10077 4.18471 4.30118 4.33995 4.45687 4.49741 4.62550 4.68695 4.75453 4.75611 4.81145 4.84369 4.88033 4.96963 5.13634 5.14773 5.18848 5.26131 5.32092 5.34200 5.51810 5.53946 5.74475 6.08857 6.24177 6.33932 6.73370 6.77605 6.95698 7.30090 7.32622 8.87509 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002258 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.244377 B =12399.369306 C =14408.940728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.218 4.218 3 C -0.215 4.215 4 C -0.004 4.004 5 C -0.090 4.090 6 C -0.130 4.130 7 C 0.498 3.502 8 O -0.524 6.524 9 N -0.653 5.653 10 C 0.309 3.691 11 N -0.475 5.475 12 C 0.072 3.928 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.041 3.959 16 O -0.327 6.327 17 C 0.083 3.917 18 C 0.029 3.971 19 C -0.545 4.545 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.970 3.030 24 H -0.258 1.258 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.430 0.570 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.003 0.997 43 H 0.003 0.997 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 -3.410 -0.836 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.218 4.218 3 C -0.215 4.215 4 C -0.040 4.040 5 C -0.128 4.128 6 C -0.170 4.170 7 C 0.287 3.713 8 O -0.397 6.397 9 N -0.302 5.302 10 C 0.077 3.923 11 N -0.191 5.191 12 C -0.085 4.085 13 C -0.167 4.167 14 C -0.176 4.176 15 C -0.010 4.010 16 O -0.240 6.240 17 C 0.009 3.991 18 C -0.008 4.008 19 C -0.582 4.582 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.794 3.206 24 H -0.182 1.182 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.269 0.731 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.174 0.826 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.458 -3.410 -0.845 21.743 hybrid contribution 2.307 0.077 0.023 2.309 sum -19.150 -3.333 -0.821 19.456 Atomic orbital electron populations 1.19056 0.82664 1.04180 1.03995 1.23419 0.95463 1.01070 1.01842 1.23064 0.94887 1.01946 1.01630 1.18781 0.83296 0.97329 1.04582 1.21146 0.93109 0.96382 1.02137 1.21754 0.96710 0.91882 1.06620 1.21713 0.80974 0.92352 0.76271 1.90760 1.55101 1.47447 1.46390 1.43691 1.09109 1.09425 1.67958 1.18091 0.85792 0.88020 1.00371 1.67687 1.36346 1.01310 1.13732 1.23042 0.95871 0.92344 0.97257 1.22266 0.92689 1.01380 1.00337 1.21910 1.02592 0.91413 1.01719 1.19758 0.88993 0.90234 1.01985 1.86023 1.17781 1.35058 1.85147 1.22954 0.75575 0.99781 1.00770 1.18954 0.93272 0.92421 0.96152 1.21438 0.91208 0.97164 1.48434 0.91164 1.25943 1.04411 0.94718 0.94363 1.70100 1.35637 1.03206 1.47787 0.85322 0.78528 0.78940 0.77788 1.18206 1.20489 1.20495 0.88738 0.89241 0.89240 0.87681 0.87683 0.92624 0.92626 0.85642 0.85656 0.73116 0.79863 0.80788 0.82591 0.91878 0.91870 0.97863 0.97865 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.51 10.32 70.18 0.72 0.21 16 2 C -0.22 -4.44 14.13 31.13 0.44 -4.00 16 3 C -0.22 -4.56 13.34 31.13 0.42 -4.14 16 4 C 0.00 -0.06 5.70 28.79 0.16 0.11 16 5 C -0.09 -1.72 4.46 30.60 0.14 -1.58 16 6 C -0.13 -2.21 5.70 29.85 0.17 -2.04 16 7 C 0.50 13.76 7.79 87.66 0.68 14.44 16 8 O -0.52 -18.65 14.24 -3.02 -0.04 -18.69 16 9 N -0.65 -18.83 5.39 -308.03 -1.66 -20.49 16 10 C 0.31 10.27 7.45 132.98 0.99 11.26 16 11 N -0.48 -15.84 7.88 -192.58 -1.52 -17.36 16 12 C 0.07 1.83 11.17 84.64 0.95 2.77 16 13 C -0.15 -3.24 10.10 22.36 0.23 -3.01 16 14 C -0.15 -4.08 9.14 22.53 0.21 -3.88 16 15 C 0.04 1.34 6.72 22.70 0.15 1.50 16 16 O -0.33 -11.96 9.39 -93.25 -0.88 -12.83 16 17 C 0.08 3.23 4.70 71.98 0.34 3.57 16 18 C 0.03 1.46 5.34 29.85 0.16 1.62 16 19 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 20 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 21 C 0.00 0.24 5.46 84.65 0.46 0.71 16 22 N -0.93 -53.76 13.29 21.45 0.28 -53.48 16 23 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.43 10.84 8.04 -92.71 -0.75 10.10 16 37 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 38 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.16 3.82 6.44 -2.91 -0.02 3.80 16 40 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 41 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -74.99 383.20 4.93 -70.06 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.27 Total: 20.14 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 6.45 Total: -11.09 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.89 Total: -91.33 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.92 Total: -31.52 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -74.99 4.93 -70.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185731334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.378 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds