Wall clock time and date at job start Tue Mar 31 2020 11:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53005 * 109.46681 * 240.00446 * 2 1 3 5 5 H 1.08998 * 109.56508 * 64.94594 * 4 2 1 6 6 C 1.50440 * 109.56399 * 185.29603 * 4 2 1 7 7 O 1.21284 * 118.49498 * 287.11346 * 6 4 2 8 8 N 1.33383 * 123.01835 * 107.11507 * 6 4 2 9 9 C 1.45649 * 124.59216 * 4.31611 * 8 6 4 10 10 C 1.52984 * 110.77219 * 338.10379 * 9 8 6 11 11 N 1.47042 * 109.56534 * 304.70353 * 4 2 1 12 12 C 1.34778 * 121.35047 * 102.94136 * 11 4 2 13 13 O 1.21586 * 120.00049 * 4.42310 * 12 11 4 14 14 C 1.47639 * 120.00090 * 184.41445 * 12 11 4 15 15 C 1.40017 * 119.89675 * 313.36483 * 14 12 11 16 16 C 1.36311 * 120.10635 * 179.75399 * 15 14 12 17 17 C 1.40890 * 119.89497 * 0.51582 * 16 15 14 18 18 C 1.41107 * 120.10834 * 179.71113 * 17 16 15 19 19 H 1.07995 * 120.00329 * 207.05726 * 18 17 16 20 20 C 1.40228 * 119.99551 * 27.06504 * 18 17 16 21 21 N 1.30644 * 119.99959 * 14.50392 * 20 18 17 22 22 Si 1.86797 * 119.99672 * 194.49862 * 20 18 17 23 23 H 1.48508 * 109.47136 * 60.00342 * 22 20 18 24 24 H 1.48503 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47777 * 300.00080 * 22 20 18 26 26 C 1.40894 * 119.79203 * 359.74042 * 17 16 15 27 27 C 1.36320 * 119.88745 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47269 * 59.99025 * 1 2 3 29 29 H 1.08998 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46977 * 299.99833 * 1 2 3 31 31 H 1.08996 * 109.47458 * 120.00571 * 2 1 3 32 32 H 1.09002 * 109.47446 * 293.39237 * 3 2 1 33 33 H 1.09001 * 109.47096 * 53.39192 * 3 2 1 34 34 H 1.09006 * 109.47208 * 173.38686 * 3 2 1 35 35 H 0.97001 * 117.70670 * 184.34643 * 8 6 4 36 36 H 1.08996 * 109.22109 * 217.76641 * 9 8 6 37 37 H 1.09003 * 109.17892 * 98.40907 * 9 8 6 38 38 H 1.08999 * 109.72307 * 287.04880 * 10 9 8 39 39 H 1.09001 * 109.72235 * 166.39458 * 10 9 8 40 40 H 1.08003 * 119.94446 * 0.02562 * 15 14 12 41 41 H 1.08005 * 120.05810 * 180.27184 * 16 15 14 42 42 H 0.97008 * 119.99463 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.05786 * 180.02562 * 26 17 16 44 44 H 1.07998 * 119.94587 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 1 1.7515 -0.1599 -2.1381 6 6 3.5386 -0.8368 -1.1879 7 8 4.2038 0.1613 -1.3679 8 7 4.1695 -1.9865 -0.9446 9 6 3.5100 -3.2769 -0.7988 10 6 2.0384 -3.0946 -0.4225 11 7 1.4603 -2.0712 -1.3097 12 6 0.4416 -2.3604 -2.1435 13 8 0.0365 -1.5196 -2.9229 14 6 -0.1822 -3.6981 -2.1108 15 6 0.6230 -4.8434 -2.0946 16 6 0.0516 -6.0805 -2.0593 17 6 -1.3517 -6.2058 -2.0501 18 6 -1.9479 -7.4844 -2.0197 19 1 -2.9330 -7.6309 -2.4375 20 6 -1.2615 -8.5647 -1.4469 21 7 -0.2134 -8.3491 -0.6973 22 14 -1.8458 -10.3118 -1.7555 23 1 -1.8095 -10.5958 -3.2127 24 1 -0.9560 -11.2643 -1.0439 25 1 -3.2358 -10.4646 -1.2559 26 6 -2.1578 -5.0505 -2.0719 27 6 -1.5772 -3.8175 -2.1012 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7764 1.9212 -0.9432 33 1 1.5833 1.9894 0.8249 34 1 3.1236 1.4448 0.1184 35 1 5.1353 -1.9615 -0.8583 36 1 4.0114 -3.8501 -0.0190 37 1 3.5745 -3.8206 -1.7414 38 1 1.9616 -2.7680 0.6146 39 1 1.5061 -4.0369 -0.5522 40 1 1.6986 -4.7465 -2.1057 41 1 0.6735 -6.9634 -2.0424 42 1 0.2617 -9.0965 -0.3014 43 1 -3.2339 -5.1416 -2.0645 44 1 -2.1942 -2.9313 -2.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270292068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:54 Heat of formation + Delta-G solvation = -50.454261 kcal Electronic energy + Delta-G solvation = -27154.248726 eV Core-core repulsion = 23457.026712 eV Total energy + Delta-G solvation = -3697.222013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92108 -38.95062 -37.30889 -36.33436 -35.71198 -33.96349 -33.12543 -30.49847 -29.70076 -29.27786 -27.46860 -26.87289 -25.46341 -23.83484 -21.95458 -21.19718 -21.13799 -19.69086 -18.54586 -17.61659 -17.28825 -17.02348 -16.17563 -15.94783 -15.47528 -15.31485 -14.65758 -14.57177 -14.32598 -14.04705 -13.60923 -13.13352 -12.89339 -12.86863 -12.57015 -12.36545 -12.24272 -12.21154 -12.02108 -11.93115 -11.67155 -11.42463 -11.32402 -11.29353 -11.05065 -10.98013 -10.79947 -10.68333 -10.15238 -10.00887 -9.63607 -9.42684 -9.16689 -9.09760 -8.41480 -7.78165 -7.59976 -7.05386 -4.66258 2.22865 2.54337 2.87786 2.90068 2.91824 2.95359 3.00300 3.32286 3.52552 3.71991 4.38948 4.42020 4.71461 4.85392 4.94208 5.08386 5.14780 5.30750 5.38779 5.43218 5.57201 5.71278 5.73869 5.80164 5.91275 5.94273 5.99876 6.01456 6.10838 6.15494 6.34401 6.42692 6.52318 6.68498 6.74059 6.77855 6.92924 7.03449 7.20147 7.35086 7.47292 7.68896 7.77532 7.86099 7.99878 8.11243 8.33151 8.58141 8.66743 8.76411 9.86781 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.003554 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.513509 B = 7876.432877 C = 8580.294413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.146 4.146 4 C 0.136 3.864 5 H 0.125 0.875 6 C 0.520 3.480 7 O -0.549 6.549 8 N -0.717 5.717 9 C 0.093 3.907 10 C 0.076 3.924 11 N -0.616 5.616 12 C 0.586 3.414 13 O -0.555 6.555 14 C -0.275 4.275 15 C -0.076 4.076 16 C -0.168 4.168 17 C 0.127 3.873 18 C -0.447 4.447 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.780 5.780 22 Si 0.913 3.087 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.231 4.231 27 C -0.031 4.031 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.286 0.714 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 4.988 4.897 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.204 4.204 4 C 0.029 3.971 5 H 0.143 0.857 6 C 0.306 3.694 7 O -0.426 6.426 8 N -0.368 5.368 9 C -0.032 4.032 10 C -0.047 4.047 11 N -0.352 5.352 12 C 0.381 3.619 13 O -0.433 6.433 14 C -0.279 4.279 15 C -0.095 4.095 16 C -0.188 4.188 17 C 0.123 3.877 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.145 4.145 21 N -0.403 5.403 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.250 4.250 27 C -0.050 4.050 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.110 5.803 4.493 9.549 hybrid contribution 0.280 -1.052 0.101 1.093 sum 6.390 4.751 4.594 9.193 Atomic orbital electron populations 1.21761 0.93608 1.02625 1.01829 1.21268 0.97206 0.96509 0.96163 1.21862 1.01946 0.94584 1.01975 1.21338 0.87807 0.86036 1.01952 0.85688 1.20351 0.90950 0.82816 0.75252 1.90731 1.66454 1.35365 1.50087 1.45394 1.11089 1.07736 1.72585 1.21852 0.94261 0.84417 1.02687 1.22478 0.92208 0.96018 0.94006 1.48228 1.36290 1.09078 1.41568 1.18757 0.77081 0.88253 0.77809 1.90676 1.62868 1.50941 1.38840 1.18765 0.93966 0.90204 1.24977 1.20489 0.96817 0.92635 0.99535 1.21002 0.95375 0.95742 1.06650 1.17754 0.91883 0.92377 0.85644 1.19780 1.02974 0.92522 1.32194 0.89888 1.26032 0.93894 1.02008 0.92569 1.69694 1.15344 1.34703 1.20601 0.86265 0.79817 0.80193 0.80009 1.18563 1.20079 1.18730 1.20718 0.98211 0.92128 1.13985 1.20204 0.92387 0.96582 0.95805 0.92113 0.92118 0.92605 0.91122 0.92283 0.92588 0.91528 0.76820 0.89212 0.90987 0.90946 0.84652 0.88687 0.86002 0.90287 0.88347 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.71 37.16 0.32 -1.59 16 2 C -0.09 -1.20 2.50 -90.62 -0.23 -1.43 16 3 C -0.15 -1.79 8.61 37.16 0.32 -1.47 16 4 C 0.14 2.06 2.10 -68.91 -0.14 1.91 16 5 H 0.13 2.16 7.19 -51.93 -0.37 1.79 16 6 C 0.52 7.65 6.95 -11.73 -0.08 7.57 16 7 O -0.55 -9.34 15.79 5.55 0.09 -9.25 16 8 N -0.72 -8.41 5.42 -61.32 -0.33 -8.74 16 9 C 0.09 0.99 7.18 -4.51 -0.03 0.96 16 10 C 0.08 1.00 5.58 -3.63 -0.02 0.98 16 11 N -0.62 -9.78 1.97 -167.73 -0.33 -10.11 16 12 C 0.59 11.51 6.21 -12.42 -0.08 11.44 16 13 O -0.55 -12.41 16.54 5.29 0.09 -12.33 16 14 C -0.27 -5.72 5.26 -104.73 -0.55 -6.27 16 15 C -0.08 -1.53 7.27 -39.61 -0.29 -1.81 16 16 C -0.17 -3.79 8.61 -39.27 -0.34 -4.13 16 17 C 0.13 3.02 5.56 -106.80 -0.59 2.42 16 18 C -0.45 -10.59 9.05 -37.75 -0.34 -10.93 16 19 H 0.08 1.89 7.89 -52.49 -0.41 1.48 16 20 C 0.08 1.67 5.19 -17.31 -0.09 1.58 16 21 N -0.78 -17.48 10.92 55.56 0.61 -16.87 16 22 Si 0.91 16.64 29.58 -169.99 -5.03 11.61 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 26 C -0.23 -5.22 9.73 -39.27 -0.38 -5.60 16 27 C -0.03 -0.66 9.62 -39.61 -0.38 -1.04 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.93 6.90 -51.93 -0.36 0.57 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.87 7.67 -51.93 -0.40 0.48 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 35 H 0.40 3.93 8.80 -40.82 -0.36 3.57 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 7.34 -51.93 -0.38 0.42 16 38 H 0.07 0.85 7.64 -51.93 -0.40 0.45 16 39 H 0.14 2.01 4.05 -51.93 -0.21 1.79 16 40 H 0.10 1.64 5.67 -52.48 -0.30 1.34 16 41 H 0.12 2.80 6.21 -52.48 -0.33 2.47 16 42 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -27.59 350.65 -8.48 -36.06 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.95 Total: 11.76 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.90 Total: -7.42 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.06 Total: -35.72 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.18 Total: -21.58 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.59 -8.48 -36.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270292068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.391 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds