Wall clock time and date at job start Tue Mar 31 2020 11:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53005 * 109.46681 * 240.00446 * 2 1 3 5 5 H 1.08998 * 109.56508 * 64.94594 * 4 2 1 6 6 C 1.50440 * 109.56399 * 185.29603 * 4 2 1 7 7 O 1.21284 * 118.49498 * 287.11346 * 6 4 2 8 8 N 1.33383 * 123.01835 * 107.11507 * 6 4 2 9 9 C 1.45649 * 124.59216 * 4.31611 * 8 6 4 10 10 C 1.52984 * 110.77219 * 338.10379 * 9 8 6 11 11 N 1.47042 * 109.56534 * 304.70353 * 4 2 1 12 12 C 1.34778 * 121.35047 * 102.94136 * 11 4 2 13 13 O 1.21586 * 120.00049 * 4.42310 * 12 11 4 14 14 C 1.47639 * 120.00090 * 184.41445 * 12 11 4 15 15 C 1.40017 * 119.89675 * 313.36483 * 14 12 11 16 16 C 1.36311 * 120.10635 * 179.75399 * 15 14 12 17 17 C 1.40890 * 119.89497 * 0.51582 * 16 15 14 18 18 C 1.41107 * 120.10834 * 179.71113 * 17 16 15 19 19 H 1.07995 * 120.00329 * 207.05726 * 18 17 16 20 20 C 1.40228 * 119.99551 * 27.06504 * 18 17 16 21 21 N 1.30644 * 119.99959 * 14.50392 * 20 18 17 22 22 Si 1.86797 * 119.99672 * 194.49862 * 20 18 17 23 23 H 1.48508 * 109.47136 * 60.00342 * 22 20 18 24 24 H 1.48503 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47777 * 300.00080 * 22 20 18 26 26 C 1.40894 * 119.79203 * 359.74042 * 17 16 15 27 27 C 1.36320 * 119.88745 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47269 * 59.99025 * 1 2 3 29 29 H 1.08998 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46977 * 299.99833 * 1 2 3 31 31 H 1.08996 * 109.47458 * 120.00571 * 2 1 3 32 32 H 1.09002 * 109.47446 * 293.39237 * 3 2 1 33 33 H 1.09001 * 109.47096 * 53.39192 * 3 2 1 34 34 H 1.09006 * 109.47208 * 173.38686 * 3 2 1 35 35 H 0.97001 * 117.70670 * 184.34643 * 8 6 4 36 36 H 1.08996 * 109.22109 * 217.76641 * 9 8 6 37 37 H 1.09003 * 109.17892 * 98.40907 * 9 8 6 38 38 H 1.08999 * 109.72307 * 287.04880 * 10 9 8 39 39 H 1.09001 * 109.72235 * 166.39458 * 10 9 8 40 40 H 1.08003 * 119.94446 * 0.02562 * 15 14 12 41 41 H 1.08005 * 120.05810 * 180.27184 * 16 15 14 42 42 H 0.97008 * 119.99463 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.05786 * 180.02562 * 26 17 16 44 44 H 1.07998 * 119.94587 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 1 1.7515 -0.1599 -2.1381 6 6 3.5386 -0.8368 -1.1879 7 8 4.2038 0.1613 -1.3679 8 7 4.1695 -1.9865 -0.9446 9 6 3.5100 -3.2769 -0.7988 10 6 2.0384 -3.0946 -0.4225 11 7 1.4603 -2.0712 -1.3097 12 6 0.4416 -2.3604 -2.1435 13 8 0.0365 -1.5196 -2.9229 14 6 -0.1822 -3.6981 -2.1108 15 6 0.6230 -4.8434 -2.0946 16 6 0.0516 -6.0805 -2.0593 17 6 -1.3517 -6.2058 -2.0501 18 6 -1.9479 -7.4844 -2.0197 19 1 -2.9330 -7.6309 -2.4375 20 6 -1.2615 -8.5647 -1.4469 21 7 -0.2134 -8.3491 -0.6973 22 14 -1.8458 -10.3118 -1.7555 23 1 -1.8095 -10.5958 -3.2127 24 1 -0.9560 -11.2643 -1.0439 25 1 -3.2358 -10.4646 -1.2559 26 6 -2.1578 -5.0505 -2.0719 27 6 -1.5772 -3.8175 -2.1012 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7764 1.9212 -0.9432 33 1 1.5833 1.9894 0.8249 34 1 3.1236 1.4448 0.1184 35 1 5.1353 -1.9615 -0.8583 36 1 4.0114 -3.8501 -0.0190 37 1 3.5745 -3.8206 -1.7414 38 1 1.9616 -2.7680 0.6146 39 1 1.5061 -4.0369 -0.5522 40 1 1.6986 -4.7465 -2.1057 41 1 0.6735 -6.9634 -2.0424 42 1 0.2617 -9.0965 -0.3014 43 1 -3.2339 -5.1416 -2.0645 44 1 -2.1942 -2.9313 -2.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270292068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:53 Heat of formation + Delta-G solvation = -66.005117 kcal Electronic energy + Delta-G solvation = -27154.923061 eV Core-core repulsion = 23457.026712 eV Total energy + Delta-G solvation = -3697.896349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16586 -40.40463 -38.93357 -37.63894 -36.81610 -35.62431 -34.39193 -32.07931 -31.38059 -30.49877 -28.77505 -28.06441 -26.97942 -24.92460 -23.56576 -22.86312 -22.24964 -21.15004 -19.67949 -19.31625 -18.63004 -18.26568 -17.45147 -17.28340 -16.91174 -16.59028 -15.96370 -15.94381 -15.71206 -15.41534 -15.08615 -14.52007 -14.39581 -14.08878 -13.92196 -13.70078 -13.64041 -13.48777 -13.40237 -13.12328 -12.99780 -12.82168 -12.75478 -12.57617 -12.48814 -12.28295 -12.09434 -11.89831 -11.76147 -11.32833 -11.22995 -11.07769 -10.68485 -10.17908 -9.72715 -9.48486 -9.32452 -8.70830 -6.42901 0.57065 1.14481 1.38000 1.42774 1.46946 1.53428 1.73967 1.97562 2.18750 2.20906 2.72452 3.31619 3.64952 3.66573 3.75358 3.83547 3.96444 4.10942 4.17745 4.31892 4.40250 4.42644 4.45227 4.57819 4.72842 4.73739 4.88489 4.89679 4.95050 4.99316 5.05514 5.08677 5.18924 5.27630 5.30636 5.32439 5.39826 5.63195 5.74697 5.79670 5.98761 6.03032 6.12024 6.27259 6.37508 6.59203 6.84133 6.92602 7.02751 7.23438 8.23794 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.003554 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.513509 B = 7876.432877 C = 8580.294413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.139 4.139 4 C 0.134 3.866 5 H 0.099 0.901 6 C 0.521 3.479 7 O -0.575 6.575 8 N -0.702 5.702 9 C 0.095 3.905 10 C 0.069 3.931 11 N -0.606 5.606 12 C 0.587 3.413 13 O -0.590 6.590 14 C -0.277 4.277 15 C -0.061 4.061 16 C -0.184 4.184 17 C 0.101 3.899 18 C -0.482 4.482 19 H 0.079 0.921 20 C 0.043 3.957 21 N -0.799 5.799 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.262 1.262 26 C -0.246 4.246 27 C -0.039 4.039 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.296 0.704 43 H 0.101 0.899 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 4.257 6.355 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.197 4.197 4 C 0.027 3.973 5 H 0.117 0.883 6 C 0.306 3.694 7 O -0.455 6.455 8 N -0.354 5.354 9 C -0.029 4.029 10 C -0.053 4.053 11 N -0.340 5.340 12 C 0.381 3.619 13 O -0.471 6.471 14 C -0.281 4.281 15 C -0.079 4.079 16 C -0.203 4.203 17 C 0.098 3.902 18 C -0.510 4.510 19 H 0.097 0.903 20 C -0.176 4.176 21 N -0.423 5.423 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.265 4.265 27 C -0.058 4.058 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.787 5.054 5.989 11.047 hybrid contribution -0.192 -0.747 -0.316 0.833 sum 7.595 4.307 5.672 10.412 Atomic orbital electron populations 1.21704 0.94014 1.01369 1.02157 1.21271 0.96686 0.97063 0.95574 1.21798 1.01496 0.94031 1.02358 1.21378 0.88584 0.85272 1.02016 0.88318 1.20164 0.90397 0.83374 0.75427 1.90727 1.66650 1.36509 1.51589 1.45288 1.11828 1.07192 1.71052 1.21982 0.92670 0.83988 1.04264 1.22683 0.93502 0.94460 0.94608 1.48134 1.34996 1.10197 1.40666 1.18547 0.77832 0.87389 0.78109 1.90660 1.64291 1.51566 1.40595 1.18982 0.93857 0.91249 1.24004 1.20691 0.98292 0.91416 0.97514 1.20999 0.94897 0.96413 1.08027 1.18077 0.92856 0.92907 0.86339 1.20006 1.03542 0.93564 1.33844 0.90282 1.26720 0.93896 1.05149 0.91820 1.69702 1.15847 1.36210 1.20550 0.85263 0.79387 0.75601 0.79651 1.18723 1.18737 1.18680 1.20829 0.98497 0.92381 1.14832 1.20349 0.93212 0.96427 0.95831 0.93834 0.94087 0.90228 0.89481 0.93305 0.90385 0.92269 0.75259 0.84935 0.90928 0.88806 0.86116 0.85599 0.86594 0.89318 0.88084 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.71 71.98 0.63 -2.93 16 2 C -0.09 -2.13 2.50 -10.79 -0.03 -2.15 16 3 C -0.14 -3.20 8.61 71.98 0.62 -2.58 16 4 C 0.13 3.96 2.10 44.06 0.09 4.05 16 5 H 0.10 3.49 7.19 -2.39 -0.02 3.47 16 6 C 0.52 14.39 6.95 87.79 0.61 15.00 16 7 O -0.57 -18.86 15.79 -3.04 -0.05 -18.91 16 8 N -0.70 -14.29 5.42 -467.09 -2.53 -16.83 16 9 C 0.10 1.66 7.18 86.53 0.62 2.29 16 10 C 0.07 1.64 5.58 86.23 0.48 2.12 16 11 N -0.61 -18.56 1.97 -802.84 -1.58 -20.14 16 12 C 0.59 23.05 6.21 86.73 0.54 23.59 16 13 O -0.59 -26.93 16.54 -3.99 -0.07 -27.00 16 14 C -0.28 -11.52 5.26 -19.93 -0.10 -11.63 16 15 C -0.06 -2.39 7.27 22.25 0.16 -2.23 16 16 C -0.18 -8.33 8.61 22.47 0.19 -8.14 16 17 C 0.10 4.94 5.56 -21.28 -0.12 4.82 16 18 C -0.48 -23.33 9.05 23.46 0.21 -23.12 16 19 H 0.08 3.73 7.89 -2.91 -0.02 3.71 16 20 C 0.04 1.89 5.19 85.35 0.44 2.33 16 21 N -0.80 -35.49 10.92 21.87 0.24 -35.25 16 22 Si 0.98 33.59 29.58 68.60 2.03 35.62 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 24 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 25 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 26 C -0.25 -11.45 9.73 22.47 0.22 -11.23 16 27 C -0.04 -1.73 9.62 22.25 0.21 -1.52 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.23 6.90 -2.39 -0.02 1.21 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.09 1.89 7.67 -2.39 -0.02 1.88 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.47 6.51 -2.38 -0.02 1.46 16 35 H 0.41 6.70 8.80 -92.71 -0.82 5.88 16 36 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.34 7.34 -2.39 -0.02 1.32 16 38 H 0.09 1.87 7.64 -2.39 -0.02 1.85 16 39 H 0.12 3.31 4.05 -2.39 -0.01 3.30 16 40 H 0.13 4.09 5.67 -2.91 -0.02 4.07 16 41 H 0.12 5.34 6.21 -2.91 -0.02 5.32 16 42 H 0.30 11.69 8.29 -92.70 -0.77 10.92 16 43 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -61.21 350.65 3.04 -58.16 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.22 Total: 35.69 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.78 Total: -11.35 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -3.88 Total: -72.22 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.11 Total: -45.90 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Total: -61.21 3.04 -58.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270292068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.845 kcal (2) G-P(sol) polarization free energy of solvation -61.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds