Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47098 * 240.00008 * 2 1 3 5 5 C 1.50695 * 109.47184 * 59.99897 * 4 2 1 6 6 H 1.08003 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00498 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99515 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00439 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 89.99938 * 9 7 5 11 11 H 1.48497 * 109.47172 * 210.00039 * 9 7 5 12 12 H 1.48500 * 109.46967 * 329.99836 * 9 7 5 13 13 C 1.53001 * 109.47323 * 120.00033 * 2 1 3 14 14 N 1.46502 * 109.47231 * 300.00028 * 13 2 1 15 15 C 1.34781 * 120.00244 * 179.97438 * 14 13 2 16 16 O 1.21281 * 119.99369 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99803 * 179.97438 * 15 14 13 18 18 C 1.50705 * 109.46578 * 179.97438 * 17 15 14 19 19 N 1.29740 * 126.29138 * 269.99414 * 18 17 15 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.46549 * 299.99642 * 1 2 3 28 28 H 1.08996 * 109.47357 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47238 * 300.00326 * 3 2 1 32 32 H 1.09002 * 109.47143 * 60.00721 * 3 2 1 33 33 H 1.09003 * 109.47040 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47377 * 300.00161 * 4 2 1 35 35 H 0.96995 * 119.99831 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47350 * 179.97438 * 13 2 1 37 37 H 1.09007 * 109.47201 * 59.99978 * 13 2 1 38 38 H 0.96998 * 120.00055 * 359.97438 * 14 13 2 39 39 H 1.09002 * 109.47274 * 60.00609 * 17 15 14 40 40 H 1.08996 * 109.47109 * 299.99645 * 17 15 14 41 41 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 44 44 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6607 11 1 1.0844 -0.5794 -6.3617 12 1 -0.0592 1.0369 -4.9616 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4914 3.6696 16 8 2.5735 -1.4780 3.7807 17 6 1.3751 0.2193 4.9000 18 6 1.8764 -0.4919 6.1304 19 7 1.2773 -1.4571 6.7571 20 8 2.0568 -1.8641 7.8639 21 6 3.1785 -1.1182 7.9181 22 6 4.2687 -1.0927 8.7798 23 6 5.2874 -0.1893 8.5686 24 6 5.2354 0.6976 7.5024 25 6 4.1726 0.6888 6.6439 26 6 3.1294 -0.2191 6.8402 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 2.8622 -1.8818 -4.7336 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 0.9944 0.7582 2.3565 39 1 0.2851 0.2201 4.9000 40 1 1.7393 1.2467 4.9000 41 1 4.3168 -1.7785 9.6128 42 1 6.1337 -0.1705 9.2394 43 1 6.0394 1.4029 7.3523 44 1 4.1387 1.3822 5.8165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346023296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 8.590882 kcal Electronic energy + Delta-G solvation = -25476.882694 eV Core-core repulsion = 21782.221070 eV Total energy + Delta-G solvation = -3694.661624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02571 -39.74407 -38.00609 -37.24519 -34.74033 -33.73062 -32.18024 -30.99728 -30.36458 -29.82386 -27.13441 -26.57291 -26.06826 -23.61523 -23.02276 -22.97521 -21.26791 -20.12028 -18.44313 -17.84172 -17.39991 -17.10432 -16.38025 -15.99954 -15.83784 -15.52036 -15.45749 -14.57604 -14.43687 -14.20122 -13.80705 -13.77900 -13.55357 -13.09220 -12.81349 -12.76666 -12.59207 -12.52773 -12.11214 -12.09836 -11.56735 -11.45441 -11.31628 -11.21006 -11.05595 -10.88844 -10.68516 -10.46395 -10.30009 -9.97931 -9.93459 -9.26249 -9.21605 -8.97380 -8.90723 -8.86661 -8.39115 -6.03040 -4.04655 0.33646 0.97024 1.72768 2.24903 2.59335 3.17551 3.28534 3.35631 3.36558 3.38388 3.72237 3.95626 4.25119 4.42264 4.58014 4.62124 4.79558 4.84468 4.88726 4.98841 5.11425 5.32400 5.40435 5.45649 5.54375 5.56047 5.68205 5.77978 5.88668 6.01512 6.09739 6.15030 6.21290 6.30110 6.32266 6.45209 6.57390 6.67229 6.99136 7.00062 7.02213 7.06711 7.55334 7.60485 7.71710 7.95270 8.22781 8.36882 9.00125 9.58694 11.08411 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028661 B = 0.002304 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.693576 B =12150.924845 C =12427.826316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.533 6.533 17 C -0.078 4.078 18 C 0.156 3.844 19 N -0.275 5.275 20 O -0.091 6.091 21 C 0.084 3.916 22 C -0.127 4.127 23 C -0.062 4.062 24 C -0.150 4.150 25 C -0.036 4.036 26 C -0.184 4.184 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 8.401 23.774 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.118 4.118 18 C -0.025 4.025 19 N -0.017 5.017 20 O -0.102 6.102 21 C 0.030 3.970 22 C -0.147 4.147 23 C -0.082 4.082 24 C -0.169 4.169 25 C -0.056 4.056 26 C -0.188 4.188 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.257 6.684 23.850 24.800 hybrid contribution 0.064 1.153 -1.102 1.596 sum 1.320 7.837 22.747 24.096 Atomic orbital electron populations 1.21774 0.95208 1.01257 1.00290 1.20910 0.95520 0.95867 0.94962 1.21767 1.00557 0.95837 1.00282 1.19095 0.96373 0.95268 0.89465 1.21165 1.31246 1.12102 0.90481 0.92242 1.25022 0.95320 0.95058 0.99123 1.69963 1.36906 1.22974 1.23494 0.86641 0.79171 0.79409 0.83047 1.20764 1.21332 1.19939 1.21682 0.99017 0.96123 0.82623 1.46132 1.53143 1.32012 1.05558 1.19994 0.81194 0.84959 0.84281 1.90777 1.37620 1.25895 1.86631 1.20284 1.04039 1.00038 0.87489 1.23730 0.91472 0.92566 0.94780 1.79873 1.12754 1.12495 0.96594 1.89156 1.27369 1.51705 1.41956 1.20293 0.89614 0.91334 0.95715 1.20057 0.91675 1.02599 1.00363 1.21147 0.97086 0.93100 0.96833 1.20811 0.99025 1.01051 0.95979 1.20467 0.91199 0.95758 0.98132 1.20623 0.97490 1.02862 0.97806 0.95221 0.91339 0.93314 0.93335 0.91357 0.95232 0.96332 0.96323 0.93001 0.91631 0.91657 0.76427 0.85970 0.85791 0.84378 0.84288 0.84729 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.29 7.65 -34.44 -0.26 -13.55 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.13 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.72 -9.29 4.96 -60.29 -0.30 -9.59 16 15 C 0.51 7.03 7.82 -10.99 -0.09 6.94 16 16 O -0.53 -9.93 16.03 5.56 0.09 -9.85 16 17 C -0.08 -0.74 6.30 -29.03 -0.18 -0.92 16 18 C 0.16 1.99 5.95 -80.12 -0.48 1.51 16 19 N -0.27 -4.11 12.81 34.91 0.45 -3.66 16 20 O -0.09 -1.34 12.06 7.68 0.09 -1.25 16 21 C 0.08 1.05 7.48 -38.47 -0.29 0.76 16 22 C -0.13 -1.15 10.07 -39.47 -0.40 -1.55 16 23 C -0.06 -0.44 10.02 -39.54 -0.40 -0.84 16 24 C -0.15 -1.12 9.97 -39.96 -0.40 -1.52 16 25 C -0.04 -0.33 10.05 -39.63 -0.40 -0.73 16 26 C -0.18 -2.21 6.32 -105.17 -0.67 -2.87 16 27 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 28 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 4.06 6.16 -40.82 -0.25 3.80 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -34.08 366.84 -7.85 -41.93 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.16 Total: -0.14 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -3.27 Total: -13.44 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.88 Total: -38.67 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.18 Total: -11.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.08 -7.85 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346023296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.526 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds