Wall clock time and date at job start Tue Mar 31 2020 11:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47098 * 240.00008 * 2 1 3 5 5 C 1.50695 * 109.47184 * 59.99897 * 4 2 1 6 6 H 1.08003 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00498 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99515 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00439 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 89.99938 * 9 7 5 11 11 H 1.48497 * 109.47172 * 210.00039 * 9 7 5 12 12 H 1.48500 * 109.46967 * 329.99836 * 9 7 5 13 13 C 1.53001 * 109.47323 * 120.00033 * 2 1 3 14 14 N 1.46502 * 109.47231 * 300.00028 * 13 2 1 15 15 C 1.34781 * 120.00244 * 179.97438 * 14 13 2 16 16 O 1.21281 * 119.99369 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99803 * 179.97438 * 15 14 13 18 18 C 1.50705 * 109.46578 * 179.97438 * 17 15 14 19 19 N 1.29740 * 126.29138 * 269.99414 * 18 17 15 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.46549 * 299.99642 * 1 2 3 28 28 H 1.08996 * 109.47357 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47238 * 300.00326 * 3 2 1 32 32 H 1.09002 * 109.47143 * 60.00721 * 3 2 1 33 33 H 1.09003 * 109.47040 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47377 * 300.00161 * 4 2 1 35 35 H 0.96995 * 119.99831 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47350 * 179.97438 * 13 2 1 37 37 H 1.09007 * 109.47201 * 59.99978 * 13 2 1 38 38 H 0.96998 * 120.00055 * 359.97438 * 14 13 2 39 39 H 1.09002 * 109.47274 * 60.00609 * 17 15 14 40 40 H 1.08996 * 109.47109 * 299.99645 * 17 15 14 41 41 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 44 44 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6607 11 1 1.0844 -0.5794 -6.3617 12 1 -0.0592 1.0369 -4.9616 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4914 3.6696 16 8 2.5735 -1.4780 3.7807 17 6 1.3751 0.2193 4.9000 18 6 1.8764 -0.4919 6.1304 19 7 1.2773 -1.4571 6.7571 20 8 2.0568 -1.8641 7.8639 21 6 3.1785 -1.1182 7.9181 22 6 4.2687 -1.0927 8.7798 23 6 5.2874 -0.1893 8.5686 24 6 5.2354 0.6976 7.5024 25 6 4.1726 0.6888 6.6439 26 6 3.1294 -0.2191 6.8402 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 2.8622 -1.8818 -4.7336 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 0.9944 0.7582 2.3565 39 1 0.2851 0.2201 4.9000 40 1 1.7393 1.2467 4.9000 41 1 4.3168 -1.7785 9.6128 42 1 6.1337 -0.1705 9.2394 43 1 6.0394 1.4029 7.3523 44 1 4.1387 1.3822 5.8165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346023296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:04 Heat of formation + Delta-G solvation = -13.649525 kcal Electronic energy + Delta-G solvation = -25477.847110 eV Core-core repulsion = 21782.221070 eV Total energy + Delta-G solvation = -3695.626040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.85422 -40.93514 -38.74384 -38.65994 -35.65521 -35.28122 -33.97593 -31.68403 -31.12998 -30.75679 -29.01849 -27.92413 -27.41459 -24.93846 -24.25174 -23.71013 -22.36287 -21.14195 -19.85079 -18.57825 -18.38237 -18.23802 -18.18146 -16.98402 -16.73536 -16.68002 -16.43693 -16.36276 -15.39159 -15.13096 -15.08588 -14.77625 -14.70844 -14.34982 -14.23256 -13.94141 -13.91827 -13.36905 -13.27611 -13.11340 -12.85446 -12.71550 -12.56478 -12.38806 -12.30859 -12.27432 -12.21260 -12.07293 -11.96812 -11.51680 -11.24636 -10.90498 -10.80597 -10.50930 -10.12133 -9.97408 -9.62787 -8.13604 -6.21397 -0.41034 0.27167 0.89906 1.39980 1.43173 1.43797 1.52824 1.53929 2.18652 2.45315 2.64390 2.92404 3.17503 3.21145 3.56049 3.71007 3.97346 4.04710 4.09136 4.10719 4.22683 4.24825 4.29701 4.35804 4.47328 4.70745 4.73718 4.75904 4.82015 4.92294 4.99986 5.10177 5.12332 5.16286 5.28590 5.39084 5.39933 5.46785 5.53063 5.56636 5.58472 5.69930 5.82515 5.91179 6.14403 6.30517 6.51425 6.94443 7.19194 7.46616 8.99015 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028661 B = 0.002304 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.693576 B =12150.924845 C =12427.826316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.258 1.258 13 C 0.142 3.858 14 N -0.700 5.700 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.068 4.068 18 C 0.155 3.845 19 N -0.317 5.317 20 O -0.121 6.121 21 C 0.049 3.951 22 C -0.140 4.140 23 C -0.051 4.051 24 C -0.146 4.146 25 C -0.045 4.045 26 C -0.209 4.209 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.077 0.923 33 H -0.014 1.014 34 H -0.018 1.018 35 H 0.259 0.741 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.419 0.581 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 12.159 25.008 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.182 1.182 13 C 0.018 3.982 14 N -0.353 5.353 15 C 0.300 3.700 16 O -0.468 6.468 17 C -0.108 4.108 18 C -0.027 4.027 19 N -0.062 5.062 20 O -0.131 6.131 21 C -0.004 4.004 22 C -0.159 4.159 23 C -0.070 4.070 24 C -0.164 4.164 25 C -0.065 4.065 26 C -0.212 4.212 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.004 0.996 34 H 0.000 1.000 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.259 0.741 39 H 0.168 0.832 40 H 0.190 0.810 41 H 0.171 0.829 42 H 0.195 0.805 43 H 0.186 0.814 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.137 10.496 25.108 27.237 hybrid contribution 0.221 -0.023 -1.406 1.423 sum 1.358 10.473 23.702 25.948 Atomic orbital electron populations 1.21725 0.93590 1.00861 1.01951 1.20697 0.96678 0.96549 0.92446 1.21708 0.99994 0.94221 1.02011 1.18997 0.94304 0.94122 0.92605 1.21599 1.30275 1.12050 0.90966 0.90709 1.25973 0.95742 0.95861 1.02823 1.70129 1.38930 1.25050 1.24055 0.85537 0.79244 0.78082 0.78734 1.20058 1.21830 1.18229 1.21211 0.97910 0.95209 0.83888 1.45825 1.53042 1.32197 1.04217 1.20664 0.79909 0.84143 0.85238 1.90769 1.40169 1.28501 1.87388 1.20460 1.05665 1.01141 0.83502 1.24284 0.91613 0.91672 0.95095 1.79775 1.14420 1.14263 0.97725 1.89062 1.28612 1.52950 1.42493 1.20883 0.90047 0.92073 0.97400 1.20486 0.91282 1.03639 1.00501 1.21671 0.97045 0.91385 0.96867 1.21316 0.99035 1.01033 0.95038 1.20860 0.90812 0.95547 0.99233 1.20903 0.98278 1.04045 0.97993 0.90574 0.92558 0.94830 0.94337 0.92638 0.90402 0.99581 0.99952 0.93241 0.93359 0.94145 0.74140 0.83158 0.80974 0.82858 0.80496 0.81392 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.24 0.54 -52.18 -0.03 -2.27 16 3 C -0.12 -3.68 8.05 71.98 0.58 -3.10 16 4 C 0.04 1.86 4.04 29.85 0.12 1.98 16 5 C -0.51 -26.80 7.65 25.60 0.20 -26.60 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 9 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 13 C 0.14 4.78 4.56 86.38 0.39 5.18 16 14 N -0.70 -16.45 4.96 -463.05 -2.30 -18.75 16 15 C 0.51 13.28 7.82 87.65 0.69 13.97 16 16 O -0.59 -22.25 16.03 -3.03 -0.05 -22.29 16 17 C -0.07 -1.09 6.30 29.10 0.18 -0.91 16 18 C 0.15 3.84 5.95 45.04 0.27 4.11 16 19 N -0.32 -9.83 12.81 -43.47 -0.56 -10.39 16 20 O -0.12 -3.81 12.06 29.86 0.36 -3.45 16 21 C 0.05 1.24 7.48 22.99 0.17 1.42 16 22 C -0.14 -2.40 10.07 22.34 0.23 -2.17 16 23 C -0.05 -0.57 10.02 22.30 0.22 -0.34 16 24 C -0.15 -1.67 9.97 22.02 0.22 -1.45 16 25 C -0.04 -0.71 10.05 22.24 0.22 -0.49 16 26 C -0.21 -4.85 6.32 -20.22 -0.13 -4.98 16 27 H 0.08 1.68 6.86 -2.39 -0.02 1.66 16 28 H 0.06 1.92 6.62 -2.39 -0.02 1.90 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 32 H 0.08 1.59 6.86 -2.39 -0.02 1.57 16 33 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.42 6.52 6.16 -92.71 -0.57 5.95 16 39 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 43 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 44 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -82.01 366.84 4.60 -77.42 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.45 Total: 8.09 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.38 Total: -18.92 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.57 Total: -85.87 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.31 Total: -25.74 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -82.01 4.60 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346023296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.765 kcal (2) G-P(sol) polarization free energy of solvation -82.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds