Wall clock time and date at job start Tue Mar 31 2020 11:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52998 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.53582 * 52.17472 * 4 3 2 6 6 N 1.47310 * 110.60209 * 289.17578 * 4 3 2 7 7 C 1.34527 * 106.62052 * 241.25286 * 6 4 3 8 8 O 1.21542 * 123.77197 * 180.21142 * 7 6 4 9 9 N 1.33790 * 112.45325 * 0.38004 * 7 6 4 10 10 C 1.46512 * 124.17322 * 179.86660 * 9 7 6 11 11 H 1.09001 * 109.46683 * 179.32390 * 10 9 7 12 12 C 1.53000 * 109.46882 * 299.31783 * 10 9 7 13 13 C 1.50692 * 109.47582 * 295.00316 * 12 10 9 14 14 H 1.08002 * 120.00269 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00435 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00250 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99752 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47234 * 89.99830 * 17 15 13 19 19 H 1.48499 * 109.47132 * 210.00164 * 17 15 13 20 20 H 1.48507 * 109.47123 * 329.99765 * 17 15 13 21 21 C 1.50696 * 109.47157 * 59.32152 * 10 9 7 22 22 C 1.38234 * 119.99624 * 217.93397 * 21 10 9 23 23 C 1.38240 * 119.99386 * 179.78917 * 22 21 10 24 24 C 1.38232 * 120.00498 * 0.44050 * 23 22 21 25 25 C 1.38233 * 119.99630 * 359.81333 * 24 23 22 26 26 C 1.38234 * 120.00502 * 359.97438 * 25 24 23 27 27 C 1.34763 * 111.64981 * 359.59799 * 9 7 6 28 28 O 1.21234 * 127.16132 * 180.19154 * 27 9 7 29 29 H 1.09000 * 109.47530 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47115 * 300.00222 * 1 2 3 31 31 H 1.09003 * 109.47221 * 59.99757 * 1 2 3 32 32 H 1.09001 * 109.46626 * 239.99934 * 2 1 3 33 33 H 1.08992 * 109.46957 * 120.00656 * 2 1 3 34 34 H 1.09001 * 109.46865 * 60.00518 * 3 2 1 35 35 H 1.08997 * 109.47407 * 299.99833 * 3 2 1 36 36 H 0.97003 * 126.68913 * 61.43503 * 6 4 3 37 37 H 1.09003 * 109.47052 * 174.99701 * 12 10 9 38 38 H 1.09009 * 109.47013 * 55.00179 * 12 10 9 39 39 H 0.96998 * 119.99671 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.00287 * 359.97438 * 22 21 10 41 41 H 1.08008 * 119.99394 * 180.27034 * 23 22 21 42 42 H 1.07999 * 120.00054 * 179.83338 * 24 23 22 43 43 H 1.08003 * 119.99938 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00495 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9527 0.8162 -0.8054 6 7 4.0878 0.9896 1.3033 7 6 4.8034 2.0105 1.8088 8 8 5.3760 1.9690 2.8801 9 7 4.8112 3.0778 1.0022 10 6 5.5084 4.3310 1.3022 11 1 5.3665 5.0316 0.4793 12 6 4.9419 4.9343 2.5890 13 6 3.5020 5.3215 2.3710 14 1 3.0371 5.1537 1.4107 15 6 2.7776 5.8890 3.3977 16 7 1.5208 6.2264 3.2076 17 14 3.5814 6.1787 5.0589 18 1 4.1996 7.5288 5.0811 19 1 2.5551 6.0865 6.1282 20 1 4.6286 5.1509 5.2881 21 6 6.9795 4.0571 1.4808 22 6 7.6966 4.7368 2.4475 23 6 9.0451 4.4823 2.6142 24 6 9.6784 3.5549 1.8083 25 6 8.9623 2.8790 0.8381 26 6 7.6129 3.1302 0.6741 27 6 4.1035 2.8559 -0.1230 28 8 3.9290 3.6266 -1.0424 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9433 0.1232 1.7150 37 1 5.5189 5.8184 2.8605 38 1 5.0031 4.1998 3.3922 39 1 1.0112 6.6254 3.9301 40 1 7.2028 5.4644 3.0745 41 1 9.6045 5.0103 3.3725 42 1 10.7325 3.3581 1.9368 43 1 9.4572 2.1547 0.2080 44 1 7.0535 2.6024 -0.0841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348848363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:25 Heat of formation + Delta-G solvation = -46.678379 kcal Electronic energy + Delta-G solvation = -27512.791082 eV Core-core repulsion = 23815.732803 eV Total energy + Delta-G solvation = -3697.058279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.50196 -40.25218 -39.56567 -37.72860 -36.95445 -35.51934 -34.57312 -32.91290 -31.81559 -30.87371 -30.12047 -27.39286 -25.71892 -24.53108 -23.64320 -22.99807 -22.25383 -22.10291 -20.70428 -19.24236 -19.07556 -18.04512 -17.76425 -17.07121 -16.70825 -16.55857 -16.35064 -15.94948 -15.89840 -15.54303 -15.19988 -15.09964 -14.89423 -14.64267 -14.42334 -14.28710 -13.87854 -13.78036 -13.58320 -13.20745 -12.88250 -12.75563 -12.59864 -12.37610 -12.16443 -12.09345 -11.93612 -11.85443 -11.62790 -11.53564 -11.46477 -11.02628 -10.81451 -10.66652 -10.37706 -9.81757 -9.62391 -8.34769 -6.38203 0.38341 0.49952 0.65533 1.27024 1.30245 1.33963 1.43751 2.10420 2.26420 2.29685 2.89351 2.97376 3.02196 3.57806 3.69407 3.84473 3.94448 4.10480 4.12791 4.17047 4.26269 4.29215 4.41508 4.49679 4.57276 4.60812 4.63710 4.71431 4.76149 4.92906 4.99827 5.02064 5.10358 5.15945 5.22973 5.29987 5.33240 5.46271 5.48802 5.57604 5.62347 5.69172 5.91394 6.11478 6.16059 6.21498 6.44527 6.65497 7.23284 7.25013 8.81263 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.006781 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.686039 B = 4127.985993 C = 6288.797954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.118 4.118 4 C 0.112 3.888 5 H 0.172 0.828 6 N -0.707 5.707 7 C 0.701 3.299 8 O -0.570 6.570 9 N -0.557 5.557 10 C 0.202 3.798 11 H 0.091 0.909 12 C -0.015 4.015 13 C -0.521 4.521 14 H 0.031 0.969 15 C 0.016 3.984 16 N -0.942 5.942 17 Si 0.936 3.064 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.257 1.257 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.122 4.122 27 C 0.513 3.487 28 O -0.505 6.505 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.450 0.550 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 -14.852 -6.696 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.157 4.157 4 C 0.004 3.996 5 H 0.189 0.811 6 N -0.373 5.373 7 C 0.402 3.598 8 O -0.446 6.446 9 N -0.300 5.300 10 C 0.100 3.900 11 H 0.109 0.891 12 C -0.053 4.053 13 C -0.559 4.559 14 H 0.049 0.951 15 C -0.181 4.181 16 N -0.582 5.582 17 Si 0.760 3.240 18 H -0.182 1.182 19 H -0.208 1.208 20 H -0.181 1.181 21 C -0.100 4.100 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.140 4.140 27 C 0.302 3.698 28 O -0.378 6.378 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.297 0.703 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.127 -14.284 -6.537 18.690 hybrid contribution -0.723 0.581 1.032 1.388 sum 9.405 -13.702 -5.504 17.507 Atomic orbital electron populations 1.21783 0.95615 1.02459 1.01468 1.21483 0.96194 0.93183 1.03895 1.21851 0.90089 1.00658 1.03128 1.22247 0.97328 0.91279 0.88755 0.81119 1.45398 1.53755 1.16654 1.21496 1.15976 0.79934 0.80846 0.83057 1.90930 1.49978 1.82296 1.21408 1.46304 1.48358 1.15015 1.20346 1.19880 0.87820 0.82560 0.99718 0.89083 1.19897 0.94989 0.96474 0.93891 1.21143 0.95980 1.40432 0.98301 0.95066 1.25794 0.95149 0.94668 1.02532 1.70044 1.09921 1.43847 1.34378 0.85864 0.78980 0.79897 0.79291 1.18215 1.20798 1.18128 1.20032 0.93794 0.98619 0.97587 1.21297 0.95567 1.00279 0.97232 1.21447 0.93596 0.98691 1.00081 1.21519 1.01239 0.95824 0.95140 1.21394 0.93080 1.00136 0.98969 1.20951 0.96000 0.98000 0.99039 1.21608 0.76680 0.90715 0.80829 1.90733 1.57879 1.53519 1.35639 0.90800 0.94345 0.92572 0.88704 0.90890 0.93683 0.89650 0.70258 0.94143 0.95324 0.92475 0.86399 0.83571 0.82676 0.83227 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.11 -1.75 5.87 30.59 0.18 -1.57 16 3 C -0.12 -2.89 4.96 30.59 0.15 -2.74 16 4 C 0.11 2.74 3.65 44.37 0.16 2.90 16 5 H 0.17 2.55 8.14 -2.38 -0.02 2.54 16 6 N -0.71 -18.53 6.06 -459.60 -2.79 -21.31 16 7 C 0.70 26.59 7.72 179.44 1.39 27.98 16 8 O -0.57 -25.51 15.71 -3.85 -0.06 -25.57 16 9 N -0.56 -22.30 1.48 -754.45 -1.12 -23.42 16 10 C 0.20 8.82 2.50 44.24 0.11 8.93 16 11 H 0.09 4.21 7.64 -2.39 -0.02 4.19 16 12 C -0.01 -0.75 2.72 29.85 0.08 -0.66 16 13 C -0.52 -30.86 9.39 25.60 0.24 -30.62 16 14 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 15 C 0.02 0.98 5.47 84.65 0.46 1.44 16 16 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 17 Si 0.94 46.15 27.47 68.60 1.88 48.04 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 21 C -0.10 -3.72 4.71 -19.87 -0.09 -3.81 16 22 C -0.13 -4.38 9.12 22.27 0.20 -4.18 16 23 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 24 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 25 C -0.12 -2.95 10.05 22.27 0.22 -2.72 16 26 C -0.12 -3.84 9.03 22.27 0.20 -3.64 16 27 C 0.51 18.76 7.66 87.94 0.67 19.43 16 28 O -0.51 -21.32 17.51 -2.89 -0.05 -21.37 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.45 8.67 8.61 -92.71 -0.80 7.87 16 37 H 0.04 1.94 5.73 -2.39 -0.01 1.93 16 38 H 0.03 1.53 5.66 -2.38 -0.01 1.52 16 39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.12 4.30 5.88 -2.91 -0.02 4.28 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.11 3.34 7.66 -2.91 -0.02 3.32 16 Total: -1.00 -80.31 362.12 3.48 -76.84 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.16 Total: 23.20 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.14 Total: 3.16 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.60 Total: -104.29 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.11 Total: -46.94 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -80.31 3.48 -76.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348848363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.158 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds