Wall clock time and date at job start Tue Mar 31 2020 11:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3 5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3 14 14 N 1.46506 * 109.46748 * 59.99983 * 13 2 1 15 15 C 1.33796 * 124.18018 * 90.02773 * 14 13 2 16 16 O 1.21541 * 123.76746 * 359.96049 * 15 14 13 17 17 N 1.34521 * 112.45710 * 179.97438 * 15 14 13 18 18 C 1.47313 * 106.62252 * 0.02562 * 17 15 14 19 19 H 1.08999 * 110.59454 * 241.46839 * 18 17 15 20 20 C 1.50695 * 110.60106 * 118.67856 * 18 17 15 21 21 C 1.38243 * 119.99919 * 321.17774 * 20 18 17 22 22 C 1.38235 * 120.00073 * 179.78829 * 21 20 18 23 23 C 1.38235 * 119.99772 * 0.44356 * 22 21 20 24 24 C 1.38240 * 120.00177 * 359.81013 * 23 22 21 25 25 C 1.38228 * 119.99736 * 359.97438 * 24 23 22 26 26 C 1.34767 * 124.17563 * 269.72385 * 14 13 2 27 27 O 1.21236 * 127.16060 * 0.02562 * 26 14 13 28 28 H 1.09005 * 109.47428 * 300.00019 * 1 2 3 29 29 H 1.09004 * 109.47351 * 60.00373 * 1 2 3 30 30 H 1.09006 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00052 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99431 * 3 2 1 34 34 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.46376 * 60.00233 * 4 2 1 36 36 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47672 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47443 * 300.00194 * 13 2 1 39 39 H 0.97001 * 126.68495 * 179.97438 * 17 15 14 40 40 H 1.08001 * 119.99867 * 0.02562 * 21 20 18 41 41 H 1.07998 * 120.00358 * 180.27816 * 22 21 20 42 42 H 1.07999 * 120.00418 * 179.83500 * 23 22 21 43 43 H 1.07997 * 120.00169 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99950 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5375 -0.0107 2.4798 6 1 0.9169 0.8676 2.3806 7 6 1.8754 -0.4783 3.7320 8 7 2.6314 -1.5476 3.8528 9 14 1.2590 0.4068 5.2571 10 1 -0.2260 0.4074 5.2630 11 1 1.7580 -0.2904 6.4696 12 1 1.7546 1.8066 5.2513 13 6 2.0400 -0.7213 -1.2491 14 7 1.5516 -0.0307 -2.4454 15 6 2.2051 0.9623 -3.0594 16 8 3.2769 1.3977 -2.6867 17 7 1.5431 1.4251 -4.1351 18 6 0.3023 0.6376 -4.2373 19 1 0.2739 0.0872 -5.1778 20 6 -0.9047 1.5310 -4.1110 21 6 -0.8969 2.5801 -3.2109 22 6 -2.0024 3.4023 -3.0981 23 6 -3.1192 3.1698 -3.8789 24 6 -3.1290 2.1175 -4.7753 25 6 -2.0218 1.2981 -4.8912 26 6 0.3915 -0.3212 -3.0666 27 8 -0.4146 -1.1707 -2.7528 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 3.1300 -0.7215 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 2.8694 -1.8764 4.7337 37 1 3.1299 -0.7209 -1.2494 38 1 1.6767 -1.7490 -1.2492 39 1 1.8270 2.1388 -4.7275 40 1 -0.0256 2.7598 -2.5985 41 1 -1.9947 4.2247 -2.3981 42 1 -3.9839 3.8105 -3.7890 43 1 -4.0016 1.9356 -5.3850 44 1 -2.0296 0.4756 -5.5913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348981971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:27 Heat of formation + Delta-G solvation = -24.005545 kcal Electronic energy + Delta-G solvation = -27398.954887 eV Core-core repulsion = 23702.879776 eV Total energy + Delta-G solvation = -3696.075111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54572 -39.36978 -38.43440 -37.07188 -36.03719 -34.02908 -32.21371 -31.51440 -31.09013 -27.65873 -26.94540 -26.49838 -26.40584 -23.22177 -23.10592 -22.79984 -21.57256 -20.51957 -18.29393 -17.83603 -17.50782 -16.81613 -16.30367 -16.18045 -15.45920 -15.44131 -15.16816 -14.97146 -14.47853 -14.12764 -13.78814 -13.75252 -13.58844 -13.53799 -13.02012 -12.92528 -12.68820 -12.01789 -11.80024 -11.62353 -11.33241 -11.03364 -11.01095 -10.92221 -10.88188 -10.75030 -10.52764 -10.24538 -10.15112 -9.75876 -9.69425 -9.57436 -9.17671 -9.13673 -8.98813 -8.76944 -8.31494 -5.96155 -3.96553 0.92558 1.15023 1.69373 2.38155 3.05130 3.15283 3.35782 3.40299 3.42516 3.47237 4.08363 4.24404 4.48020 4.49244 4.74180 4.83612 4.88885 5.17303 5.21830 5.32669 5.39908 5.57829 5.60541 5.65196 5.70063 5.76729 5.85517 6.15162 6.17000 6.20679 6.24834 6.26564 6.39503 6.45984 6.69199 6.71038 6.75117 6.83372 7.10144 7.15670 7.18189 7.22407 7.48612 7.65810 7.79722 8.02275 8.20692 8.45538 9.07099 9.66107 11.15466 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.004009 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.560677 B = 6983.185255 C = 7762.247231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 C -0.118 4.118 4 C 0.038 3.962 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.124 3.876 14 N -0.565 5.565 15 C 0.701 3.299 16 O -0.532 6.532 17 N -0.728 5.728 18 C 0.136 3.864 19 H 0.130 0.870 20 C -0.099 4.099 21 C -0.092 4.092 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.094 4.094 26 C 0.528 3.472 27 O -0.456 6.456 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.438 0.562 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 7.357 -21.266 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.175 4.175 4 C 0.001 3.999 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.310 5.310 15 C 0.402 3.598 16 O -0.404 6.404 17 N -0.393 5.393 18 C 0.026 3.974 19 H 0.147 0.853 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.112 4.112 26 C 0.313 3.687 27 O -0.324 6.324 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.282 0.718 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.251 6.910 -20.639 23.277 hybrid contribution -0.225 0.752 0.675 1.035 sum -8.477 7.662 -19.965 23.003 Atomic orbital electron populations 1.21729 0.95000 1.01230 0.99860 1.21032 0.95672 0.96239 0.94606 1.21702 1.00798 0.95427 0.99588 1.19079 0.96308 0.95134 0.89413 1.21124 1.30995 1.12053 0.90469 0.92397 1.24984 0.95309 0.95093 0.98995 1.69945 1.36987 1.23129 1.23495 0.86717 0.79138 0.79833 0.82665 1.20340 1.21381 1.20325 1.22151 1.00471 0.95854 0.81058 1.46488 1.21435 1.34415 1.28702 1.15895 0.83877 0.79931 0.80088 1.91033 1.20026 1.61557 1.67819 1.45565 1.21353 1.40913 1.31448 1.20840 0.84621 0.91596 1.00325 0.85279 1.19433 0.94460 0.97025 0.99152 1.21038 0.98830 0.94351 0.96790 1.21175 0.93235 0.99713 0.99378 1.21257 0.98140 0.97627 0.95746 1.21123 0.98201 0.95507 0.99124 1.20967 0.92553 0.99037 0.98678 1.20541 0.81103 0.83533 0.83502 1.90812 1.42084 1.32051 1.67499 0.91727 0.95865 0.93120 0.92890 0.95923 0.91923 0.96248 0.96340 0.93026 0.88888 0.89124 0.71819 0.85944 0.85616 0.85830 0.85645 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 7.25 37.15 0.27 -2.16 16 2 C -0.07 -1.53 0.60 -154.51 -0.09 -1.62 16 3 C -0.12 -2.38 7.10 37.16 0.26 -2.12 16 4 C 0.04 0.96 4.04 -27.88 -0.11 0.85 16 5 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.12 2.21 4.74 -4.04 -0.02 2.20 16 14 N -0.57 -8.70 2.12 -120.73 -0.26 -8.96 16 15 C 0.70 10.24 7.05 -88.02 -0.62 9.62 16 16 O -0.53 -9.51 16.32 5.33 0.09 -9.43 16 17 N -0.73 -7.40 5.51 -60.33 -0.33 -7.73 16 18 C 0.14 1.36 3.87 -69.36 -0.27 1.09 16 19 H 0.13 0.90 8.04 -51.93 -0.42 0.48 16 20 C -0.10 -1.01 5.08 -104.62 -0.53 -1.54 16 21 C -0.09 -1.01 9.32 -39.58 -0.37 -1.38 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.09 -0.81 9.68 -39.59 -0.38 -1.19 16 26 C 0.53 7.50 5.97 -10.55 -0.06 7.43 16 27 O -0.46 -7.65 16.90 5.60 0.09 -7.56 16 28 H 0.06 1.38 6.62 -51.93 -0.34 1.03 16 29 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.02 0.41 6.18 -51.93 -0.32 0.09 16 33 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.09 1.66 7.86 -51.93 -0.41 1.26 16 38 H 0.09 1.58 8.00 -51.93 -0.42 1.17 16 39 H 0.44 3.29 8.96 -40.82 -0.37 2.92 16 40 H 0.12 1.50 7.72 -52.49 -0.41 1.09 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.82 8.05 -52.48 -0.42 0.40 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -32.95 357.90 -8.94 -41.89 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.16 Total: 1.44 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.48 Total: -5.75 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.15 Total: -42.69 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.18 Total: -16.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.95 -8.94 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348981971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.884 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds