Wall clock time and date at job start Tue Mar 31 2020 11:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3 5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3 14 14 N 1.46506 * 109.46748 * 59.99983 * 13 2 1 15 15 C 1.33796 * 124.18018 * 90.02773 * 14 13 2 16 16 O 1.21541 * 123.76746 * 359.96049 * 15 14 13 17 17 N 1.34521 * 112.45710 * 179.97438 * 15 14 13 18 18 C 1.47313 * 106.62252 * 0.02562 * 17 15 14 19 19 H 1.08999 * 110.59454 * 241.46839 * 18 17 15 20 20 C 1.50695 * 110.60106 * 118.67856 * 18 17 15 21 21 C 1.38243 * 119.99919 * 321.17774 * 20 18 17 22 22 C 1.38235 * 120.00073 * 179.78829 * 21 20 18 23 23 C 1.38235 * 119.99772 * 0.44356 * 22 21 20 24 24 C 1.38240 * 120.00177 * 359.81013 * 23 22 21 25 25 C 1.38228 * 119.99736 * 359.97438 * 24 23 22 26 26 C 1.34767 * 124.17563 * 269.72385 * 14 13 2 27 27 O 1.21236 * 127.16060 * 0.02562 * 26 14 13 28 28 H 1.09005 * 109.47428 * 300.00019 * 1 2 3 29 29 H 1.09004 * 109.47351 * 60.00373 * 1 2 3 30 30 H 1.09006 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00052 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99431 * 3 2 1 34 34 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.46376 * 60.00233 * 4 2 1 36 36 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47672 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47443 * 300.00194 * 13 2 1 39 39 H 0.97001 * 126.68495 * 179.97438 * 17 15 14 40 40 H 1.08001 * 119.99867 * 0.02562 * 21 20 18 41 41 H 1.07998 * 120.00358 * 180.27816 * 22 21 20 42 42 H 1.07999 * 120.00418 * 179.83500 * 23 22 21 43 43 H 1.07997 * 120.00169 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99950 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5375 -0.0107 2.4798 6 1 0.9169 0.8676 2.3806 7 6 1.8754 -0.4783 3.7320 8 7 2.6314 -1.5476 3.8528 9 14 1.2590 0.4068 5.2571 10 1 -0.2260 0.4074 5.2630 11 1 1.7580 -0.2904 6.4696 12 1 1.7546 1.8066 5.2513 13 6 2.0400 -0.7213 -1.2491 14 7 1.5516 -0.0307 -2.4454 15 6 2.2051 0.9623 -3.0594 16 8 3.2769 1.3977 -2.6867 17 7 1.5431 1.4251 -4.1351 18 6 0.3023 0.6376 -4.2373 19 1 0.2739 0.0872 -5.1778 20 6 -0.9047 1.5310 -4.1110 21 6 -0.8969 2.5801 -3.2109 22 6 -2.0024 3.4023 -3.0981 23 6 -3.1192 3.1698 -3.8789 24 6 -3.1290 2.1175 -4.7753 25 6 -2.0218 1.2981 -4.8912 26 6 0.3915 -0.3212 -3.0666 27 8 -0.4146 -1.1707 -2.7528 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 3.1300 -0.7215 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 2.8694 -1.8764 4.7337 37 1 3.1299 -0.7209 -1.2494 38 1 1.6767 -1.7490 -1.2492 39 1 1.8270 2.1388 -4.7275 40 1 -0.0256 2.7598 -2.5985 41 1 -1.9947 4.2247 -2.3981 42 1 -3.9839 3.8105 -3.7890 43 1 -4.0016 1.9356 -5.3850 44 1 -2.0296 0.4756 -5.5913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348981971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:26 Heat of formation + Delta-G solvation = -44.120841 kcal Electronic energy + Delta-G solvation = -27399.827152 eV Core-core repulsion = 23702.879776 eV Total energy + Delta-G solvation = -3696.947376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.67104 -40.14833 -39.62305 -38.64040 -37.21220 -35.44557 -34.15773 -32.32546 -31.77846 -29.30881 -28.53734 -28.12664 -27.65796 -25.17567 -24.13939 -23.50553 -22.50609 -21.69104 -19.82945 -18.96133 -18.55022 -18.33880 -17.84426 -17.22806 -16.65655 -16.49183 -16.33424 -16.15888 -15.92233 -15.46219 -15.16548 -15.06587 -14.68363 -14.44585 -14.32256 -14.07193 -13.97549 -13.67364 -13.57023 -12.83120 -12.80108 -12.64890 -12.62132 -12.39786 -12.29498 -12.18365 -12.09299 -11.97996 -11.54050 -11.39136 -11.30220 -11.03924 -10.67025 -10.51484 -10.43388 -9.84724 -9.75372 -8.15235 -6.22463 0.19233 0.47288 0.59381 1.26203 1.40333 1.42334 1.49686 1.96308 2.12554 2.43098 2.71034 3.17847 3.18816 3.41724 3.73938 3.87936 3.94076 4.04918 4.11005 4.20171 4.27547 4.33547 4.39590 4.58453 4.62010 4.65028 4.67622 4.70530 4.83007 4.98626 4.99963 5.10616 5.12450 5.32829 5.38682 5.40274 5.49984 5.50885 5.52923 5.60642 5.73200 5.81927 5.86243 6.04515 6.07381 6.29112 6.37020 6.89763 7.10797 7.44387 8.96854 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.004009 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.560677 B = 6983.185255 C = 7762.247231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.069 4.069 3 C -0.104 4.104 4 C 0.046 3.954 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.132 3.868 14 N -0.571 5.571 15 C 0.699 3.301 16 O -0.569 6.569 17 N -0.701 5.701 18 C 0.150 3.850 19 H 0.174 0.826 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.093 4.093 26 C 0.522 3.478 27 O -0.484 6.484 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.048 0.952 34 H -0.007 1.007 35 H -0.005 1.005 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.453 0.547 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 8.561 -23.370 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 C -0.162 4.162 4 C 0.008 3.992 5 C -0.556 4.556 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.011 3.989 14 N -0.316 5.316 15 C 0.400 3.600 16 O -0.445 6.445 17 N -0.367 5.367 18 C 0.042 3.958 19 H 0.191 0.809 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.111 4.111 26 C 0.310 3.690 27 O -0.354 6.354 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.012 0.988 35 H 0.013 0.987 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.300 0.700 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.408 8.151 -22.801 26.357 hybrid contribution 0.372 0.382 1.267 1.375 sum -10.036 8.533 -21.534 25.244 Atomic orbital electron populations 1.21558 0.94334 1.00556 0.99926 1.20849 0.95991 0.96150 0.93978 1.21538 0.99772 0.95117 0.99722 1.18908 0.94544 0.94273 0.91447 1.21486 1.30630 1.12101 0.91390 0.91930 1.25853 0.95543 0.95854 1.02364 1.70081 1.38395 1.24737 1.24231 0.85656 0.78902 0.78796 0.78646 1.19375 1.21094 1.19449 1.21768 1.00156 0.95757 0.81244 1.46442 1.22293 1.34752 1.28130 1.15976 0.83550 0.79657 0.80780 1.91014 1.21722 1.62696 1.69048 1.45419 1.20736 1.40631 1.29904 1.20958 0.84284 0.90700 0.99883 0.80936 1.19439 0.95000 0.96915 0.99874 1.21023 0.98838 0.95703 0.97541 1.21351 0.93561 0.99981 1.00127 1.21581 0.98225 0.97997 0.95121 1.21519 0.98920 0.94771 0.98839 1.21310 0.91831 0.99571 0.98413 1.21252 0.79959 0.83615 0.84195 1.90799 1.42683 1.33405 1.68515 0.93143 0.94114 0.94099 0.94250 0.94101 0.93267 0.98842 0.98710 0.93004 0.89403 0.89074 0.69971 0.87866 0.85158 0.83721 0.82941 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 7.25 71.98 0.52 -3.80 16 2 C -0.07 -2.90 0.60 -52.18 -0.03 -2.93 16 3 C -0.10 -4.29 7.10 71.98 0.51 -3.78 16 4 C 0.05 2.41 4.04 29.85 0.12 2.53 16 5 C -0.52 -29.07 7.65 25.60 0.20 -28.88 16 6 H 0.06 3.39 5.68 -2.91 -0.02 3.38 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 C 0.13 4.82 4.74 86.38 0.41 5.23 16 14 N -0.57 -17.32 2.12 -773.11 -1.64 -18.96 16 15 C 0.70 19.86 7.05 179.44 1.27 21.12 16 16 O -0.57 -20.36 16.32 -3.84 -0.06 -20.43 16 17 N -0.70 -12.75 5.51 -463.21 -2.55 -15.30 16 18 C 0.15 2.57 3.87 43.62 0.17 2.74 16 19 H 0.17 1.58 8.04 -2.39 -0.02 1.56 16 20 C -0.11 -1.94 5.08 -19.87 -0.10 -2.04 16 21 C -0.11 -2.32 9.32 22.27 0.21 -2.11 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.11 -1.57 10.05 22.27 0.22 -1.35 16 24 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 25 C -0.09 -1.25 9.68 22.27 0.22 -1.03 16 26 C 0.52 14.05 5.97 87.94 0.53 14.58 16 27 O -0.48 -15.68 16.90 -2.89 -0.05 -15.72 16 28 H 0.05 2.16 6.62 -2.38 -0.02 2.15 16 29 H 0.04 1.48 6.21 -2.38 -0.01 1.47 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.04 1.51 6.18 -2.38 -0.01 1.49 16 33 H 0.05 2.12 6.62 -2.39 -0.02 2.11 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.09 3.28 7.86 -2.39 -0.02 3.26 16 38 H 0.09 3.29 8.00 -2.39 -0.02 3.27 16 39 H 0.45 5.67 8.96 -92.71 -0.83 4.84 16 40 H 0.10 2.47 7.72 -2.91 -0.02 2.44 16 41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.15 1.21 8.05 -2.91 -0.02 1.19 16 Total: -1.00 -73.25 357.90 3.34 -69.91 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.19 Total: 13.07 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.14 Total: -2.62 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -3.91 Total: -91.15 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.11 Total: -36.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.25 3.34 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348981971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.792 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds