Wall clock time and date at job start Tue Mar 31 2020 11:03:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 C 1.53005 * 109.47213 * 2 1
4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3
5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1
6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2
7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2
8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4
9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4
10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5
11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5
13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3
14 14 N 1.46506 * 109.46748 * 59.99983 * 13 2 1
15 15 C 1.33796 * 124.18018 * 90.02773 * 14 13 2
16 16 O 1.21541 * 123.76746 * 359.96049 * 15 14 13
17 17 N 1.34521 * 112.45710 * 179.97438 * 15 14 13
18 18 C 1.47313 * 106.62252 * 0.02562 * 17 15 14
19 19 H 1.08999 * 110.59454 * 241.46839 * 18 17 15
20 20 C 1.50695 * 110.60106 * 118.67856 * 18 17 15
21 21 C 1.38243 * 119.99919 * 321.17774 * 20 18 17
22 22 C 1.38235 * 120.00073 * 179.78829 * 21 20 18
23 23 C 1.38235 * 119.99772 * 0.44356 * 22 21 20
24 24 C 1.38240 * 120.00177 * 359.81013 * 23 22 21
25 25 C 1.38228 * 119.99736 * 359.97438 * 24 23 22
26 26 C 1.34767 * 124.17563 * 269.72385 * 14 13 2
27 27 O 1.21236 * 127.16060 * 0.02562 * 26 14 13
28 28 H 1.09005 * 109.47428 * 300.00019 * 1 2 3
29 29 H 1.09004 * 109.47351 * 60.00373 * 1 2 3
30 30 H 1.09006 * 109.47240 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.47438 * 180.02562 * 3 2 1
32 32 H 1.09004 * 109.46658 * 300.00052 * 3 2 1
33 33 H 1.08996 * 109.47069 * 59.99431 * 3 2 1
34 34 H 1.09000 * 109.47211 * 179.97438 * 4 2 1
35 35 H 1.09007 * 109.46376 * 60.00233 * 4 2 1
36 36 H 0.96995 * 120.00207 * 179.97438 * 8 7 5
37 37 H 1.08995 * 109.47672 * 179.97438 * 13 2 1
38 38 H 1.08998 * 109.47443 * 300.00194 * 13 2 1
39 39 H 0.97001 * 126.68495 * 179.97438 * 17 15 14
40 40 H 1.08001 * 119.99867 * 0.02562 * 21 20 18
41 41 H 1.07998 * 120.00358 * 180.27816 * 22 21 20
42 42 H 1.07999 * 120.00418 * 179.83500 * 23 22 21
43 43 H 1.07997 * 120.00169 * 179.97438 * 24 23 22
44 44 H 1.08004 * 119.99950 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7211 1.2493
5 6 1.5375 -0.0107 2.4798
6 1 0.9169 0.8676 2.3806
7 6 1.8754 -0.4783 3.7320
8 7 2.6314 -1.5476 3.8528
9 14 1.2590 0.4068 5.2571
10 1 -0.2260 0.4074 5.2630
11 1 1.7580 -0.2904 6.4696
12 1 1.7546 1.8066 5.2513
13 6 2.0400 -0.7213 -1.2491
14 7 1.5516 -0.0307 -2.4454
15 6 2.2051 0.9623 -3.0594
16 8 3.2769 1.3977 -2.6867
17 7 1.5431 1.4251 -4.1351
18 6 0.3023 0.6376 -4.2373
19 1 0.2739 0.0872 -5.1778
20 6 -0.9047 1.5310 -4.1110
21 6 -0.8969 2.5801 -3.2109
22 6 -2.0024 3.4023 -3.0981
23 6 -3.1192 3.1698 -3.8789
24 6 -3.1290 2.1175 -4.7753
25 6 -2.0218 1.2981 -4.8912
26 6 0.3915 -0.3212 -3.0666
27 8 -0.4146 -1.1707 -2.7528
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 0.0005
31 1 3.1299 1.4426 -0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6765 1.9564 0.8899
34 1 3.1300 -0.7215 1.2491
35 1 1.6766 -1.7488 1.2493
36 1 2.8694 -1.8764 4.7337
37 1 3.1299 -0.7209 -1.2494
38 1 1.6767 -1.7490 -1.2492
39 1 1.8270 2.1388 -4.7275
40 1 -0.0256 2.7598 -2.5985
41 1 -1.9947 4.2247 -2.3981
42 1 -3.9839 3.8105 -3.7890
43 1 -4.0016 1.9356 -5.3850
44 1 -2.0296 0.4756 -5.5913
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348981971.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:26
Heat of formation + Delta-G solvation = -44.120841 kcal
Electronic energy + Delta-G solvation = -27399.827152 eV
Core-core repulsion = 23702.879776 eV
Total energy + Delta-G solvation = -3696.947376 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.67104 -40.14833 -39.62305 -38.64040 -37.21220 -35.44557 -34.15773 -32.32546
-31.77846 -29.30881 -28.53734 -28.12664 -27.65796 -25.17567 -24.13939 -23.50553
-22.50609 -21.69104 -19.82945 -18.96133 -18.55022 -18.33880 -17.84426 -17.22806
-16.65655 -16.49183 -16.33424 -16.15888 -15.92233 -15.46219 -15.16548 -15.06587
-14.68363 -14.44585 -14.32256 -14.07193 -13.97549 -13.67364 -13.57023 -12.83120
-12.80108 -12.64890 -12.62132 -12.39786 -12.29498 -12.18365 -12.09299 -11.97996
-11.54050 -11.39136 -11.30220 -11.03924 -10.67025 -10.51484 -10.43388 -9.84724
-9.75372 -8.15235 -6.22463 0.19233 0.47288 0.59381 1.26203 1.40333
1.42334 1.49686 1.96308 2.12554 2.43098 2.71034 3.17847 3.18816
3.41724 3.73938 3.87936 3.94076 4.04918 4.11005 4.20171 4.27547
4.33547 4.39590 4.58453 4.62010 4.65028 4.67622 4.70530 4.83007
4.98626 4.99963 5.10616 5.12450 5.32829 5.38682 5.40274 5.49984
5.50885 5.52923 5.60642 5.73200 5.81927 5.86243 6.04515 6.07381
6.29112 6.37020 6.89763 7.10797 7.44387 8.96854
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.015936 B = 0.004009 C = 0.003606
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1756.560677 B = 6983.185255 C = 7762.247231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.069 4.069
3 C -0.104 4.104
4 C 0.046 3.954
5 C -0.518 4.518
6 H 0.063 0.937
7 C 0.001 3.999
8 N -0.934 5.934
9 Si 0.955 3.045
10 H -0.269 1.269
11 H -0.285 1.285
12 H -0.269 1.269
13 C 0.132 3.868
14 N -0.571 5.571
15 C 0.699 3.301
16 O -0.569 6.569
17 N -0.701 5.701
18 C 0.150 3.850
19 H 0.174 0.826
20 C -0.111 4.111
21 C -0.113 4.113
22 C -0.132 4.132
23 C -0.111 4.111
24 C -0.123 4.123
25 C -0.093 4.093
26 C 0.522 3.478
27 O -0.484 6.484
28 H 0.050 0.950
29 H 0.040 0.960
30 H 0.040 0.960
31 H 0.038 0.962
32 H 0.040 0.960
33 H 0.048 0.952
34 H -0.007 1.007
35 H -0.005 1.005
36 H 0.261 0.739
37 H 0.088 0.912
38 H 0.091 0.909
39 H 0.453 0.547
40 H 0.103 0.897
41 H 0.130 0.870
42 H 0.145 0.855
43 H 0.153 0.847
44 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.660 8.561 -23.370 27.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.070 4.070
3 C -0.162 4.162
4 C 0.008 3.992
5 C -0.556 4.556
6 H 0.081 0.919
7 C -0.196 4.196
8 N -0.574 5.574
9 Si 0.780 3.220
10 H -0.194 1.194
11 H -0.211 1.211
12 H -0.194 1.194
13 C 0.011 3.989
14 N -0.316 5.316
15 C 0.400 3.600
16 O -0.445 6.445
17 N -0.367 5.367
18 C 0.042 3.958
19 H 0.191 0.809
20 C -0.112 4.112
21 C -0.131 4.131
22 C -0.150 4.150
23 C -0.129 4.129
24 C -0.140 4.140
25 C -0.111 4.111
26 C 0.310 3.690
27 O -0.354 6.354
28 H 0.069 0.931
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.057 0.943
32 H 0.059 0.941
33 H 0.067 0.933
34 H 0.012 0.988
35 H 0.013 0.987
36 H 0.070 0.930
37 H 0.106 0.894
38 H 0.109 0.891
39 H 0.300 0.700
40 H 0.121 0.879
41 H 0.148 0.852
42 H 0.163 0.837
43 H 0.171 0.829
44 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -10.408 8.151 -22.801 26.357
hybrid contribution 0.372 0.382 1.267 1.375
sum -10.036 8.533 -21.534 25.244
Atomic orbital electron populations
1.21558 0.94334 1.00556 0.99926 1.20849 0.95991 0.96150 0.93978
1.21538 0.99772 0.95117 0.99722 1.18908 0.94544 0.94273 0.91447
1.21486 1.30630 1.12101 0.91390 0.91930 1.25853 0.95543 0.95854
1.02364 1.70081 1.38395 1.24737 1.24231 0.85656 0.78902 0.78796
0.78646 1.19375 1.21094 1.19449 1.21768 1.00156 0.95757 0.81244
1.46442 1.22293 1.34752 1.28130 1.15976 0.83550 0.79657 0.80780
1.91014 1.21722 1.62696 1.69048 1.45419 1.20736 1.40631 1.29904
1.20958 0.84284 0.90700 0.99883 0.80936 1.19439 0.95000 0.96915
0.99874 1.21023 0.98838 0.95703 0.97541 1.21351 0.93561 0.99981
1.00127 1.21581 0.98225 0.97997 0.95121 1.21519 0.98920 0.94771
0.98839 1.21310 0.91831 0.99571 0.98413 1.21252 0.79959 0.83615
0.84195 1.90799 1.42683 1.33405 1.68515 0.93143 0.94114 0.94099
0.94250 0.94101 0.93267 0.98842 0.98710 0.93004 0.89403 0.89074
0.69971 0.87866 0.85158 0.83721 0.82941 0.82850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.32 7.25 71.98 0.52 -3.80 16
2 C -0.07 -2.90 0.60 -52.18 -0.03 -2.93 16
3 C -0.10 -4.29 7.10 71.98 0.51 -3.78 16
4 C 0.05 2.41 4.04 29.85 0.12 2.53 16
5 C -0.52 -29.07 7.65 25.60 0.20 -28.88 16
6 H 0.06 3.39 5.68 -2.91 -0.02 3.38 16
7 C 0.00 0.07 5.46 84.65 0.46 0.53 16
8 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16
9 Si 0.95 44.91 29.54 68.60 2.03 46.94 16
10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16
12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
13 C 0.13 4.82 4.74 86.38 0.41 5.23 16
14 N -0.57 -17.32 2.12 -773.11 -1.64 -18.96 16
15 C 0.70 19.86 7.05 179.44 1.27 21.12 16
16 O -0.57 -20.36 16.32 -3.84 -0.06 -20.43 16
17 N -0.70 -12.75 5.51 -463.21 -2.55 -15.30 16
18 C 0.15 2.57 3.87 43.62 0.17 2.74 16
19 H 0.17 1.58 8.04 -2.39 -0.02 1.56 16
20 C -0.11 -1.94 5.08 -19.87 -0.10 -2.04 16
21 C -0.11 -2.32 9.32 22.27 0.21 -2.11 16
22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16
23 C -0.11 -1.57 10.05 22.27 0.22 -1.35 16
24 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16
25 C -0.09 -1.25 9.68 22.27 0.22 -1.03 16
26 C 0.52 14.05 5.97 87.94 0.53 14.58 16
27 O -0.48 -15.68 16.90 -2.89 -0.05 -15.72 16
28 H 0.05 2.16 6.62 -2.38 -0.02 2.15 16
29 H 0.04 1.48 6.21 -2.38 -0.01 1.47 16
30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16
31 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16
32 H 0.04 1.51 6.18 -2.38 -0.01 1.49 16
33 H 0.05 2.12 6.62 -2.39 -0.02 2.11 16
34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
35 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16
36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16
37 H 0.09 3.28 7.86 -2.39 -0.02 3.26 16
38 H 0.09 3.29 8.00 -2.39 -0.02 3.27 16
39 H 0.45 5.67 8.96 -92.71 -0.83 4.84 16
40 H 0.10 2.47 7.72 -2.91 -0.02 2.44 16
41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16
42 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16
43 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16
44 H 0.15 1.21 8.05 -2.91 -0.02 1.19 16
Total: -1.00 -73.25 357.90 3.34 -69.91
By element:
Atomic # 1 Polarization: 12.88 SS G_CDS: 0.19 Total: 13.07 kcal
Atomic # 6 Polarization: -7.77 SS G_CDS: 5.14 Total: -2.62 kcal
Atomic # 7 Polarization: -87.24 SS G_CDS: -3.91 Total: -91.15 kcal
Atomic # 8 Polarization: -36.04 SS G_CDS: -0.11 Total: -36.15 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal
Total: -73.25 3.34 -69.91 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348981971.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.792 kcal
(2) G-P(sol) polarization free energy of solvation -73.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds