Wall clock time and date at job start Tue Mar 31 2020 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46916 * 2 1 4 4 C 1.50696 * 109.46906 * 239.99849 * 2 1 3 5 5 H 1.08004 * 119.99689 * 239.99515 * 4 2 1 6 6 C 1.37878 * 119.99892 * 59.99812 * 4 2 1 7 7 N 1.31507 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99725 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46979 * 119.99996 * 8 6 4 11 11 H 1.48498 * 109.47034 * 240.00280 * 8 6 4 12 12 C 1.52997 * 109.47052 * 119.99819 * 2 1 3 13 13 N 1.46506 * 109.47248 * 299.99987 * 12 2 1 14 14 C 1.34760 * 124.17763 * 89.97772 * 13 12 2 15 15 O 1.21237 * 127.16264 * 0.05617 * 14 13 12 16 16 C 1.51582 * 105.68688 * 180.02562 * 14 13 12 17 17 N 1.47316 * 103.59163 * 359.97438 * 16 14 13 18 18 C 1.46496 * 126.68902 * 179.73523 * 17 16 14 19 19 C 1.50703 * 109.47114 * 90.00479 * 18 17 16 20 20 C 1.38244 * 119.99399 * 269.72333 * 19 18 17 21 21 C 1.38240 * 119.99469 * 179.76477 * 20 19 18 22 22 C 1.38237 * 120.00167 * 0.50897 * 21 20 19 23 23 C 1.38235 * 119.99618 * 359.74362 * 22 21 20 24 24 C 1.38229 * 120.00475 * 89.99442 * 19 18 17 25 25 C 1.33794 * 124.17371 * 270.00113 * 13 12 2 26 26 O 1.21539 * 123.77555 * 0.02562 * 25 13 12 27 27 H 1.09000 * 109.46958 * 299.99643 * 1 2 3 28 28 H 1.08992 * 109.47323 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46764 * 299.99761 * 3 2 1 32 32 H 1.09000 * 109.47276 * 59.99907 * 3 2 1 33 33 H 0.97004 * 119.99604 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47431 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47532 * 60.00018 * 12 2 1 36 36 H 1.09003 * 110.60206 * 241.47241 * 16 14 13 37 37 H 1.09001 * 110.60352 * 118.52154 * 16 14 13 38 38 H 1.09005 * 109.47321 * 209.99489 * 18 17 16 39 39 H 1.08996 * 109.47367 * 330.00231 * 18 17 16 40 40 H 1.07992 * 120.00365 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.00060 * 180.23163 * 21 20 19 42 42 H 1.08001 * 120.00251 * 179.72726 * 22 21 20 43 43 H 1.08008 * 119.99814 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00056 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3224 -1.1197 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1676 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8160 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 0.3888 -0.3170 3.0633 15 8 -0.4195 -1.1634 2.7469 16 6 0.3020 0.6385 4.2368 17 7 1.5428 1.4260 4.1346 18 6 1.9690 2.5076 5.0260 19 6 2.7823 1.9346 6.1579 20 6 2.1580 1.5375 7.3257 21 6 2.9035 1.0073 8.3621 22 6 4.2745 0.8840 8.2348 23 6 4.8993 1.2860 7.0691 24 6 4.1532 1.8112 6.0307 25 6 2.2050 0.9628 3.0590 26 8 3.2766 1.3984 2.6862 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 0.7094 1.1616 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.2735 0.0889 5.1777 37 1 -0.5712 1.2841 4.1420 38 1 2.5754 3.2209 4.4678 39 1 1.0916 3.0134 5.4289 40 1 1.0875 1.6375 7.4267 41 1 2.4154 0.6936 9.2730 42 1 4.8575 0.4739 9.0462 43 1 5.9705 1.1900 6.9698 44 1 4.6415 2.1259 5.1202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420082244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:19 Heat of formation + Delta-G solvation = -10.747554 kcal Electronic energy + Delta-G solvation = -27130.705655 eV Core-core repulsion = 23435.205453 eV Total energy + Delta-G solvation = -3695.500201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98859 -39.41722 -38.11797 -36.48286 -35.66056 -34.28497 -32.14601 -31.07164 -30.78112 -28.29149 -26.37218 -25.64809 -25.47714 -24.86858 -22.77249 -22.22213 -21.41494 -20.14941 -18.62713 -17.34482 -16.95826 -16.58731 -16.20812 -15.87156 -15.43358 -15.34662 -14.84654 -14.76352 -14.52863 -13.94900 -13.74515 -13.68390 -13.56781 -13.05775 -12.76859 -12.66547 -12.61770 -12.23261 -12.10261 -11.46136 -11.21257 -11.16877 -11.13230 -10.72427 -10.66257 -10.44568 -10.27004 -10.15951 -10.03058 -9.74792 -9.42089 -9.09607 -9.06612 -8.90341 -8.73514 -8.58946 -8.31046 -5.94886 -4.05984 1.04764 1.23234 2.04357 2.50271 3.27697 3.31188 3.39341 3.43425 3.49362 3.70081 4.31471 4.44442 4.56703 4.57322 4.81538 4.86537 4.96177 5.11767 5.12870 5.28041 5.31360 5.43462 5.46478 5.71723 5.78438 5.88671 6.14407 6.16966 6.25395 6.31718 6.33952 6.43219 6.48483 6.62258 6.81158 6.88638 7.01139 7.12880 7.17285 7.51004 7.59300 7.70910 7.75969 7.81738 8.13768 8.19958 8.44477 8.53474 8.93832 9.59020 11.06187 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003423 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.823966 B = 8177.987339 C = 8640.433176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.054 3.946 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.562 5.562 14 C 0.520 3.480 15 O -0.471 6.471 16 C 0.062 3.938 17 N -0.630 5.630 18 C 0.194 3.806 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.092 4.092 25 C 0.703 3.297 26 O -0.534 6.534 27 H -0.001 1.001 28 H 0.082 0.918 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.001 0.999 33 H 0.259 0.741 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 3.533 21.511 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 C -0.177 4.177 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.306 5.306 14 C 0.306 3.694 15 O -0.342 6.342 16 C -0.065 4.065 17 N -0.370 5.370 18 C 0.072 3.928 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.110 4.110 25 C 0.405 3.595 26 O -0.407 6.407 27 H 0.018 0.982 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.436 3.471 20.960 21.293 hybrid contribution 0.277 -0.489 -0.763 0.948 sum 1.713 2.982 20.197 20.487 Atomic orbital electron populations 1.21773 0.97468 0.99193 0.99579 1.18473 0.92985 0.93156 0.90053 1.21726 0.98733 0.97756 0.99450 1.20970 1.31529 1.12062 0.89883 0.92440 1.24876 0.94855 0.94903 0.98822 1.69843 1.36635 1.22706 1.23001 0.86516 0.78586 0.79687 0.83063 1.19778 1.21095 1.21072 1.22227 0.99549 0.95540 0.81769 1.46572 1.21169 1.34012 1.28807 1.20653 0.81256 0.83673 0.83783 1.90792 1.42368 1.32785 1.68216 1.22469 0.89776 0.94585 0.99637 1.47606 1.21813 1.38314 1.29277 1.20116 0.98456 0.86488 0.87695 1.20308 0.94494 1.01182 0.95492 1.21056 0.99692 0.98468 0.93133 1.21121 0.94221 1.00183 0.98951 1.21193 0.94903 0.99621 0.97788 1.21204 1.00102 0.99147 0.93677 1.21253 0.93548 0.97478 0.98758 1.15863 0.83933 0.79878 0.79783 1.90944 1.20196 1.61391 1.68177 0.98235 0.89925 0.95200 0.95095 0.90200 0.98043 0.93117 0.90053 0.90221 0.87028 0.86640 0.88404 0.88909 0.86044 0.86126 0.86231 0.86010 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.26 37.16 0.27 -2.78 16 2 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 3 C -0.12 -3.00 7.12 37.16 0.26 -2.74 16 4 C -0.51 -13.69 8.01 -34.44 -0.28 -13.97 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.67 9.35 55.43 0.52 -24.15 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.13 2.79 4.67 -4.04 -0.02 2.77 16 13 N -0.56 -10.65 2.13 -120.72 -0.26 -10.90 16 14 C 0.52 8.82 6.66 -10.56 -0.07 8.75 16 15 O -0.47 -9.22 16.87 5.59 0.09 -9.13 16 16 C 0.06 0.72 7.66 -4.31 -0.03 0.68 16 17 N -0.63 -8.33 3.00 -181.39 -0.54 -8.87 16 18 C 0.19 1.96 6.27 -5.19 -0.03 1.93 16 19 C -0.11 -1.16 5.46 -104.62 -0.57 -1.74 16 20 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 21 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.09 -1.03 9.70 -39.59 -0.38 -1.42 16 25 C 0.70 12.59 6.74 -88.01 -0.59 11.99 16 26 O -0.53 -11.06 15.98 5.33 0.09 -10.97 16 27 H 0.00 -0.03 6.19 -51.93 -0.32 -0.35 16 28 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 32 H 0.00 0.01 6.18 -51.93 -0.32 -0.31 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 35 H 0.08 1.71 8.00 -51.93 -0.42 1.29 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.06 7.97 -51.93 -0.41 0.65 16 39 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -32.16 358.61 -9.20 -41.36 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.27 Total: 0.37 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.20 Total: 0.67 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.28 Total: -43.93 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.18 Total: -20.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.16 -9.20 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420082244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.611 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds