Wall clock time and date at job start Tue Mar 31 2020 11:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46916 * 2 1 4 4 C 1.50696 * 109.46906 * 239.99849 * 2 1 3 5 5 H 1.08004 * 119.99689 * 239.99515 * 4 2 1 6 6 C 1.37878 * 119.99892 * 59.99812 * 4 2 1 7 7 N 1.31507 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99725 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46979 * 119.99996 * 8 6 4 11 11 H 1.48498 * 109.47034 * 240.00280 * 8 6 4 12 12 C 1.52997 * 109.47052 * 119.99819 * 2 1 3 13 13 N 1.46506 * 109.47248 * 299.99987 * 12 2 1 14 14 C 1.34760 * 124.17763 * 89.97772 * 13 12 2 15 15 O 1.21237 * 127.16264 * 0.05617 * 14 13 12 16 16 C 1.51582 * 105.68688 * 180.02562 * 14 13 12 17 17 N 1.47316 * 103.59163 * 359.97438 * 16 14 13 18 18 C 1.46496 * 126.68902 * 179.73523 * 17 16 14 19 19 C 1.50703 * 109.47114 * 90.00479 * 18 17 16 20 20 C 1.38244 * 119.99399 * 269.72333 * 19 18 17 21 21 C 1.38240 * 119.99469 * 179.76477 * 20 19 18 22 22 C 1.38237 * 120.00167 * 0.50897 * 21 20 19 23 23 C 1.38235 * 119.99618 * 359.74362 * 22 21 20 24 24 C 1.38229 * 120.00475 * 89.99442 * 19 18 17 25 25 C 1.33794 * 124.17371 * 270.00113 * 13 12 2 26 26 O 1.21539 * 123.77555 * 0.02562 * 25 13 12 27 27 H 1.09000 * 109.46958 * 299.99643 * 1 2 3 28 28 H 1.08992 * 109.47323 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46764 * 299.99761 * 3 2 1 32 32 H 1.09000 * 109.47276 * 59.99907 * 3 2 1 33 33 H 0.97004 * 119.99604 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47431 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47532 * 60.00018 * 12 2 1 36 36 H 1.09003 * 110.60206 * 241.47241 * 16 14 13 37 37 H 1.09001 * 110.60352 * 118.52154 * 16 14 13 38 38 H 1.09005 * 109.47321 * 209.99489 * 18 17 16 39 39 H 1.08996 * 109.47367 * 330.00231 * 18 17 16 40 40 H 1.07992 * 120.00365 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.00060 * 180.23163 * 21 20 19 42 42 H 1.08001 * 120.00251 * 179.72726 * 22 21 20 43 43 H 1.08008 * 119.99814 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00056 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3224 -1.1197 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1676 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8160 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 0.3888 -0.3170 3.0633 15 8 -0.4195 -1.1634 2.7469 16 6 0.3020 0.6385 4.2368 17 7 1.5428 1.4260 4.1346 18 6 1.9690 2.5076 5.0260 19 6 2.7823 1.9346 6.1579 20 6 2.1580 1.5375 7.3257 21 6 2.9035 1.0073 8.3621 22 6 4.2745 0.8840 8.2348 23 6 4.8993 1.2860 7.0691 24 6 4.1532 1.8112 6.0307 25 6 2.2050 0.9628 3.0590 26 8 3.2766 1.3984 2.6862 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 0.7094 1.1616 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.2735 0.0889 5.1777 37 1 -0.5712 1.2841 4.1420 38 1 2.5754 3.2209 4.4678 39 1 1.0916 3.0134 5.4289 40 1 1.0875 1.6375 7.4267 41 1 2.4154 0.6936 9.2730 42 1 4.8575 0.4739 9.0462 43 1 5.9705 1.1900 6.9698 44 1 4.6415 2.1259 5.1202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420082244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:18 Heat of formation + Delta-G solvation = -28.479529 kcal Electronic energy + Delta-G solvation = -27131.474571 eV Core-core repulsion = 23435.205453 eV Total energy + Delta-G solvation = -3696.269118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31231 -40.18429 -39.45508 -38.15355 -37.07980 -35.70836 -33.55454 -32.30482 -31.74745 -29.36033 -27.79500 -27.66484 -27.22663 -26.45815 -23.54451 -23.30888 -22.45265 -21.48347 -20.32949 -18.55306 -18.21751 -17.91648 -17.55764 -17.39425 -16.69480 -16.44606 -16.12630 -15.94063 -15.74612 -15.23157 -15.14442 -14.97149 -14.51791 -14.39106 -14.23908 -14.11452 -13.71042 -13.44952 -13.20857 -13.11234 -13.03376 -12.64326 -12.60603 -12.28832 -12.20991 -12.14305 -11.95327 -11.85260 -11.72938 -11.46342 -11.15079 -10.76604 -10.43390 -10.40510 -9.95907 -9.78347 -9.69667 -8.03598 -6.21450 0.31062 0.53877 0.74870 1.30611 1.41301 1.44133 1.54460 2.08711 2.19359 2.44905 2.97665 3.15787 3.19539 3.73650 3.84278 4.04938 4.19018 4.27801 4.29319 4.35763 4.36856 4.41981 4.56436 4.59932 4.60977 4.71947 4.74049 4.90649 4.92601 5.00185 5.10967 5.11530 5.14584 5.21899 5.43086 5.48890 5.58336 5.58920 5.62795 5.65513 5.72154 6.03376 6.11426 6.14359 6.29287 6.36451 6.51678 6.83338 7.16770 7.46161 8.96041 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003423 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.823966 B = 8177.987339 C = 8640.433176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.049 3.951 3 C -0.097 4.097 4 C -0.528 4.528 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.140 3.860 13 N -0.574 5.574 14 C 0.508 3.492 15 O -0.503 6.503 16 C 0.076 3.924 17 N -0.615 5.615 18 C 0.190 3.810 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.118 4.118 25 C 0.693 3.307 26 O -0.575 6.575 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.055 0.945 32 H 0.010 0.990 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 3.549 24.224 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.048 3.952 3 C -0.155 4.155 4 C -0.566 4.566 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.019 3.981 13 N -0.318 5.318 14 C 0.298 3.702 15 O -0.376 6.376 16 C -0.048 4.048 17 N -0.354 5.354 18 C 0.071 3.929 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.157 4.157 24 C -0.137 4.137 25 C 0.396 3.604 26 O -0.451 6.451 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.100 0.900 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.016 3.509 23.730 23.988 hybrid contribution 0.743 -0.480 -1.514 1.754 sum 0.727 3.029 22.216 22.433 Atomic orbital electron populations 1.21531 0.97434 0.98211 0.98919 1.18469 0.92884 0.92862 0.91033 1.21468 0.97373 0.98106 0.98546 1.21292 1.31800 1.12317 0.91199 0.92788 1.25581 0.95049 0.95586 1.01429 1.69963 1.37201 1.23569 1.23551 0.85581 0.78099 0.78708 0.79679 1.19312 1.20668 1.20842 1.21744 0.98864 0.95350 0.82176 1.46594 1.22384 1.34513 1.28304 1.21597 0.79872 0.83928 0.84795 1.90777 1.43022 1.34352 1.69430 1.22719 0.89918 0.93802 0.98398 1.47770 1.21553 1.38261 1.27779 1.20428 1.00201 0.85340 0.86949 1.20332 0.93860 1.01955 0.96361 1.21397 1.01311 0.97112 0.92042 1.21526 0.94012 0.99229 0.99895 1.21508 0.95769 0.99010 0.97644 1.21368 1.00587 0.99631 0.94143 1.21259 0.94771 0.99154 0.98516 1.16094 0.83736 0.79703 0.80887 1.90917 1.21982 1.62585 1.69578 0.96841 0.92375 0.96196 0.96728 0.92610 0.97089 0.93087 0.91099 0.90420 0.82855 0.82770 0.89985 0.84370 0.82798 0.83410 0.84234 0.85599 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.21 7.26 71.98 0.52 -4.69 16 2 C 0.05 2.47 0.57 -52.93 -0.03 2.44 16 3 C -0.10 -5.04 7.12 71.98 0.51 -4.53 16 4 C -0.53 -29.21 8.01 25.60 0.21 -29.01 16 5 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 6 C 0.02 1.27 5.15 84.66 0.44 1.70 16 7 N -0.90 -51.41 9.35 21.45 0.20 -51.21 16 8 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.14 6.22 4.67 86.38 0.40 6.62 16 13 N -0.57 -21.58 2.13 -773.11 -1.65 -23.23 16 14 C 0.51 16.34 6.66 87.94 0.59 16.92 16 15 O -0.50 -19.09 16.87 -2.90 -0.05 -19.14 16 16 C 0.08 1.43 7.66 85.76 0.66 2.09 16 17 N -0.62 -14.64 3.00 -846.22 -2.54 -17.18 16 18 C 0.19 3.34 6.27 85.63 0.54 3.88 16 19 C -0.12 -2.27 5.46 -19.86 -0.11 -2.37 16 20 C -0.10 -1.31 9.70 22.27 0.22 -1.10 16 21 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 22 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 24 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 25 C 0.69 24.56 6.74 179.44 1.21 25.77 16 26 O -0.57 -24.53 15.98 -3.84 -0.06 -24.59 16 27 H 0.01 0.60 6.19 -2.39 -0.01 0.58 16 28 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 29 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.01 0.74 8.10 -2.39 -0.02 0.73 16 31 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 32 H 0.01 0.50 6.18 -2.39 -0.01 0.49 16 33 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.07 3.24 7.86 -2.39 -0.02 3.22 16 35 H 0.08 3.42 8.00 -2.38 -0.02 3.40 16 36 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.73 7.97 -2.38 -0.02 1.71 16 39 H 0.14 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.10 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.23 358.61 4.96 -68.27 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.00 Total: 11.29 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.03 Total: 9.69 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -3.99 Total: -91.63 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.11 Total: -43.73 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.23 4.96 -68.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420082244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.792 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds