Wall clock time and date at job start Tue Mar 31 2020 12:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47526 * 239.99769 * 2 1 3 5 5 O 1.42905 * 109.46795 * 119.99662 * 2 1 3 6 6 C 1.35770 * 117.00200 * 63.00855 * 5 2 1 7 7 C 1.38643 * 120.07532 * 355.46342 * 6 5 2 8 8 C 1.38035 * 120.16551 * 179.97438 * 7 6 5 9 9 C 1.39082 * 120.32742 * 0.02562 * 8 7 6 10 10 N 1.40129 * 119.92626 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00319 * 145.06610 * 10 9 8 12 12 O 1.21296 * 120.00017 * 5.06962 * 11 10 9 13 13 C 1.50697 * 120.00029 * 185.06841 * 11 10 9 14 14 C 1.53002 * 109.46810 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46956 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99912 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99761 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00238 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99546 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47156 * 119.99936 * 19 17 15 22 22 H 1.48496 * 109.47017 * 239.99722 * 19 17 15 23 23 C 1.38420 * 120.14657 * 0.02562 * 9 8 7 24 24 C 1.39672 * 119.83246 * 359.97341 * 23 9 8 25 25 C 1.43202 * 120.16016 * 180.30315 * 24 23 9 26 26 N 4.92547 * 116.77147 * 111.68383 * 2 1 3 27 27 H 1.08993 * 109.47144 * 317.70954 * 1 2 3 28 28 H 1.09000 * 109.46733 * 77.70868 * 1 2 3 29 29 H 1.08998 * 109.46858 * 197.70622 * 1 2 3 30 30 H 1.08994 * 109.47336 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47234 * 299.99823 * 3 2 1 32 32 H 1.09003 * 109.47272 * 59.99623 * 3 2 1 33 33 H 1.09004 * 109.46845 * 289.75892 * 4 2 1 34 34 H 1.09005 * 109.46919 * 49.75174 * 4 2 1 35 35 H 1.08995 * 109.47034 * 169.75406 * 4 2 1 36 36 H 1.07999 * 119.91131 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.83909 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99456 * 325.06014 * 10 9 8 39 39 H 1.08994 * 109.47119 * 299.99683 * 13 11 10 40 40 H 1.09001 * 109.47106 * 60.00551 * 13 11 10 41 41 H 1.09004 * 109.47028 * 299.99647 * 14 13 11 42 42 H 1.08991 * 109.47393 * 60.00353 * 14 13 11 43 43 H 0.96998 * 119.99870 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.07967 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.6941 -1.9892 1.2898 7 6 0.8671 -2.5970 0.3577 8 6 0.5489 -3.9346 0.4805 9 6 1.0540 -4.6823 1.5389 10 7 0.7260 -6.0397 1.6552 11 6 1.6322 -6.9131 2.1372 12 8 2.6976 -6.5123 2.5561 13 6 1.3217 -8.3876 2.1559 14 6 2.5079 -9.1511 2.7482 15 6 2.1977 -10.6257 2.7663 16 1 1.2491 -10.9826 2.3931 17 6 3.1244 -11.5191 3.2604 18 7 4.2792 -11.0845 3.7153 19 14 2.7395 -13.3469 3.2835 20 1 1.3842 -13.5745 2.7209 21 1 3.7437 -14.0746 2.4665 22 1 2.7845 -13.8446 4.6818 23 6 1.8800 -4.0886 2.4777 24 6 2.2062 -2.7356 2.3596 25 6 3.0653 -2.1158 3.3231 26 7 3.7486 -1.6248 4.0863 27 1 -0.3633 0.7602 0.6915 28 1 -0.3633 0.2188 -1.0041 29 1 -0.3633 -0.9790 0.3125 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.8337 -1.7881 -1.1625 34 1 1.5353 -0.3239 -2.1297 35 1 3.1146 -0.5657 -1.3452 36 1 0.4709 -2.0225 -0.4665 37 1 -0.0954 -4.4029 -0.2488 38 1 -0.1533 -6.3506 1.3888 39 1 0.4354 -8.5646 2.7652 40 1 1.1382 -8.7332 1.1385 41 1 3.3945 -8.9741 2.1393 42 1 2.6910 -8.8055 3.7656 43 1 4.9313 -11.7131 4.0625 44 1 2.2720 -4.6703 3.2989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452672059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:15 Heat of formation + Delta-G solvation = -10.268138 kcal Electronic energy + Delta-G solvation = -25448.847972 eV Core-core repulsion = 21753.368560 eV Total energy + Delta-G solvation = -3695.479412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33821 -39.94971 -37.95048 -36.40148 -34.76970 -33.99565 -33.55232 -31.61570 -31.16318 -29.32501 -27.88202 -27.62847 -25.77429 -24.15605 -23.39140 -21.76489 -20.78277 -19.83402 -19.17697 -17.62926 -17.23947 -16.40178 -16.17348 -15.81008 -15.64439 -15.25726 -15.14562 -14.48945 -14.47263 -14.44865 -13.55986 -13.53282 -13.44624 -13.28193 -13.10030 -12.80412 -12.74392 -12.47343 -12.38341 -12.30217 -12.25308 -12.21221 -11.94555 -11.29569 -11.23708 -11.16158 -10.97992 -10.89113 -10.62167 -10.04957 -9.85364 -9.73271 -9.34286 -9.14547 -9.07029 -8.37083 -7.85489 -6.00262 -4.05169 0.62192 1.11811 2.71071 2.74938 2.77900 3.10577 3.26004 3.30305 3.37979 3.40615 3.77249 3.88786 4.21934 4.31644 4.44040 4.45220 4.56292 4.66820 4.92785 5.04870 5.07284 5.15725 5.21795 5.23683 5.34025 5.35082 5.35228 5.36827 5.60713 5.66163 5.70849 5.72364 5.78854 5.91331 6.04362 6.09624 6.14200 6.25668 6.76082 6.77411 7.07335 7.56417 7.60120 7.69319 7.78304 8.01007 8.30808 8.51059 9.03075 9.58960 11.10612 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.002386 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.871776 B =11733.536141 C =12364.965669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.204 4.204 5 O -0.301 6.301 6 C 0.160 3.840 7 C -0.208 4.208 8 C -0.083 4.083 9 C 0.120 3.880 10 N -0.684 5.684 11 C 0.509 3.491 12 O -0.513 6.513 13 C -0.128 4.128 14 C 0.035 3.965 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.039 4.039 24 C -0.045 4.045 25 C 0.269 3.731 26 N -0.421 5.421 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.411 0.589 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 22.624 -12.620 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.070 3.930 3 C -0.195 4.195 4 C -0.261 4.261 5 O -0.215 6.215 6 C 0.111 3.889 7 C -0.226 4.226 8 C -0.104 4.104 9 C 0.025 3.975 10 N -0.331 5.331 11 C 0.299 3.701 12 O -0.387 6.387 13 C -0.168 4.168 14 C -0.002 4.002 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.062 4.062 24 C -0.050 4.050 25 C -0.047 4.047 26 N -0.096 5.096 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.179 0.821 37 H 0.154 0.846 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.823 23.665 -10.925 28.222 hybrid contribution -0.924 -1.415 -0.639 1.807 sum -11.747 22.249 -11.564 27.690 Atomic orbital electron populations 1.22899 0.94577 1.04725 1.03487 1.21873 0.94062 0.93168 0.83932 1.21813 1.02384 0.92321 1.03030 1.22957 1.02977 1.03120 0.97049 1.86177 1.72729 1.19276 1.43270 1.18714 0.93475 0.83345 0.93374 1.21567 1.03120 0.96085 1.01862 1.20983 1.00174 0.93609 0.95659 1.17527 1.00312 0.84788 0.94874 1.43896 1.17933 1.04863 1.66402 1.21897 0.83108 0.89778 0.75329 1.90684 1.24334 1.79743 1.43893 1.21909 1.04098 0.87484 1.03295 1.18934 0.91142 0.93293 0.96859 1.21223 1.01976 0.91671 1.41795 0.92473 1.25030 0.95064 0.98980 0.95323 1.69999 1.06848 1.34509 1.41320 0.86531 0.78305 0.85396 0.77696 1.19731 1.21003 1.21008 1.21301 0.95597 0.90846 0.98477 1.15140 1.02838 0.92561 0.94484 1.25242 0.93125 0.93272 0.93015 1.81181 1.09925 1.08413 1.10118 0.91333 0.90733 0.89642 0.91417 0.90272 0.91437 0.89405 0.90711 0.91270 0.82136 0.84589 0.75316 0.89738 0.89711 0.95686 0.95686 0.92927 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 8.11 37.16 0.30 -0.77 16 2 C 0.11 0.76 1.11 -90.62 -0.10 0.66 16 3 C -0.14 -0.83 8.75 37.16 0.33 -0.51 16 4 C -0.20 -1.25 8.07 37.16 0.30 -0.95 16 5 O -0.30 -3.23 9.22 -19.02 -0.18 -3.41 16 6 C 0.16 1.75 6.08 -38.72 -0.24 1.51 16 7 C -0.21 -1.71 5.73 -39.51 -0.23 -1.94 16 8 C -0.08 -0.71 9.95 -39.34 -0.39 -1.10 16 9 C 0.12 1.42 6.30 -83.68 -0.53 0.89 16 10 N -0.68 -8.22 5.34 -9.87 -0.05 -8.28 16 11 C 0.51 8.73 7.68 -10.99 -0.08 8.64 16 12 O -0.51 -10.98 13.39 5.54 0.07 -10.91 16 13 C -0.13 -2.35 5.64 -27.88 -0.16 -2.50 16 14 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 15 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.04 -0.55 8.41 -38.98 -0.33 -0.88 16 24 C -0.05 -0.61 5.75 -106.72 -0.61 -1.22 16 25 C 0.27 4.18 14.86 -22.47 -0.33 3.84 16 26 N -0.42 -7.29 18.54 41.84 0.78 -6.51 16 27 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 28 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 29 H 0.09 0.48 4.73 -51.93 -0.25 0.24 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.58 4.46 -51.93 -0.23 0.35 16 34 H 0.07 0.30 7.93 -51.93 -0.41 -0.11 16 35 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.16 0.92 3.56 -52.49 -0.19 0.73 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.41 3.36 8.82 -40.82 -0.36 3.00 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.16 2.60 6.18 -52.48 -0.32 2.27 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -34.94 366.58 -6.66 -41.61 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.93 Total: -1.24 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.60 Total: -6.78 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.46 Total: -41.04 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.10 Total: -14.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.94 -6.66 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452672059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.337 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds