Wall clock time and date at job start Tue Mar 31 2020 12:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47526 * 239.99769 * 2 1 3 5 5 O 1.42905 * 109.46795 * 119.99662 * 2 1 3 6 6 C 1.35770 * 117.00200 * 63.00855 * 5 2 1 7 7 C 1.38643 * 120.07532 * 355.46342 * 6 5 2 8 8 C 1.38035 * 120.16551 * 179.97438 * 7 6 5 9 9 C 1.39082 * 120.32742 * 0.02562 * 8 7 6 10 10 N 1.40129 * 119.92626 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00319 * 145.06610 * 10 9 8 12 12 O 1.21296 * 120.00017 * 5.06962 * 11 10 9 13 13 C 1.50697 * 120.00029 * 185.06841 * 11 10 9 14 14 C 1.53002 * 109.46810 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46956 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99912 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99761 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00238 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99546 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47156 * 119.99936 * 19 17 15 22 22 H 1.48496 * 109.47017 * 239.99722 * 19 17 15 23 23 C 1.38420 * 120.14657 * 0.02562 * 9 8 7 24 24 C 1.39672 * 119.83246 * 359.97341 * 23 9 8 25 25 C 1.43202 * 120.16016 * 180.30315 * 24 23 9 26 26 N 4.92547 * 116.77147 * 111.68383 * 2 1 3 27 27 H 1.08993 * 109.47144 * 317.70954 * 1 2 3 28 28 H 1.09000 * 109.46733 * 77.70868 * 1 2 3 29 29 H 1.08998 * 109.46858 * 197.70622 * 1 2 3 30 30 H 1.08994 * 109.47336 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47234 * 299.99823 * 3 2 1 32 32 H 1.09003 * 109.47272 * 59.99623 * 3 2 1 33 33 H 1.09004 * 109.46845 * 289.75892 * 4 2 1 34 34 H 1.09005 * 109.46919 * 49.75174 * 4 2 1 35 35 H 1.08995 * 109.47034 * 169.75406 * 4 2 1 36 36 H 1.07999 * 119.91131 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.83909 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99456 * 325.06014 * 10 9 8 39 39 H 1.08994 * 109.47119 * 299.99683 * 13 11 10 40 40 H 1.09001 * 109.47106 * 60.00551 * 13 11 10 41 41 H 1.09004 * 109.47028 * 299.99647 * 14 13 11 42 42 H 1.08991 * 109.47393 * 60.00353 * 14 13 11 43 43 H 0.96998 * 119.99870 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.07967 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.6941 -1.9892 1.2898 7 6 0.8671 -2.5970 0.3577 8 6 0.5489 -3.9346 0.4805 9 6 1.0540 -4.6823 1.5389 10 7 0.7260 -6.0397 1.6552 11 6 1.6322 -6.9131 2.1372 12 8 2.6976 -6.5123 2.5561 13 6 1.3217 -8.3876 2.1559 14 6 2.5079 -9.1511 2.7482 15 6 2.1977 -10.6257 2.7663 16 1 1.2491 -10.9826 2.3931 17 6 3.1244 -11.5191 3.2604 18 7 4.2792 -11.0845 3.7153 19 14 2.7395 -13.3469 3.2835 20 1 1.3842 -13.5745 2.7209 21 1 3.7437 -14.0746 2.4665 22 1 2.7845 -13.8446 4.6818 23 6 1.8800 -4.0886 2.4777 24 6 2.2062 -2.7356 2.3596 25 6 3.0653 -2.1158 3.3231 26 7 3.7486 -1.6248 4.0863 27 1 -0.3633 0.7602 0.6915 28 1 -0.3633 0.2188 -1.0041 29 1 -0.3633 -0.9790 0.3125 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.8337 -1.7881 -1.1625 34 1 1.5353 -0.3239 -2.1297 35 1 3.1146 -0.5657 -1.3452 36 1 0.4709 -2.0225 -0.4665 37 1 -0.0954 -4.4029 -0.2488 38 1 -0.1533 -6.3506 1.3888 39 1 0.4354 -8.5646 2.7652 40 1 1.1382 -8.7332 1.1385 41 1 3.3945 -8.9741 2.1393 42 1 2.6910 -8.8055 3.7656 43 1 4.9313 -11.7131 4.0625 44 1 2.2720 -4.6703 3.2989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452672059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:14 Heat of formation + Delta-G solvation = -33.365802 kcal Electronic energy + Delta-G solvation = -25449.849562 eV Core-core repulsion = 21753.368560 eV Total energy + Delta-G solvation = -3696.481002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15894 -41.08591 -38.96884 -37.62988 -35.71692 -35.52661 -34.86842 -33.04315 -32.44844 -30.35398 -28.29014 -28.28423 -27.52650 -25.11068 -24.58287 -23.24184 -21.57965 -21.11936 -20.21871 -18.85296 -18.34829 -17.78810 -17.22860 -17.01835 -16.45641 -16.42569 -16.40235 -15.90380 -15.47931 -15.24469 -14.98030 -14.44955 -14.36739 -14.28631 -14.27432 -14.19021 -13.91625 -13.60347 -13.25501 -13.22217 -13.12014 -13.00401 -12.83604 -12.82269 -12.59904 -12.42632 -11.98084 -11.88982 -11.80045 -11.61288 -11.44854 -11.25596 -10.88866 -10.64350 -10.55528 -10.03031 -8.78803 -8.16652 -6.30185 -0.29506 0.21384 1.43906 1.44878 1.53015 1.57528 1.58090 1.90381 2.02751 2.18481 2.45194 2.77026 2.83207 3.17250 3.67732 3.80202 3.84712 3.94992 3.98610 4.02694 4.16032 4.31338 4.50098 4.60225 4.60925 4.65795 4.69404 4.75214 4.78302 4.88392 4.95593 4.96732 5.08285 5.10333 5.19533 5.22537 5.31854 5.34938 5.37811 5.53303 5.66450 5.77337 5.88512 6.19174 6.28360 6.43910 6.54678 6.89732 7.28587 7.40454 8.96106 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.002386 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.871776 B =11733.536141 C =12364.965669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.094 3.906 3 C -0.140 4.140 4 C -0.203 4.203 5 O -0.324 6.324 6 C 0.172 3.828 7 C -0.193 4.193 8 C -0.050 4.050 9 C 0.101 3.899 10 N -0.655 5.655 11 C 0.511 3.489 12 O -0.569 6.569 13 C -0.116 4.116 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.940 5.940 19 Si 0.972 3.028 20 H -0.249 1.249 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.058 4.058 24 C -0.075 4.075 25 C 0.281 3.719 26 N -0.469 5.469 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.198 0.802 37 H 0.185 0.815 38 H 0.434 0.566 39 H 0.112 0.888 40 H 0.114 0.886 41 H -0.017 1.017 42 H -0.019 1.019 43 H 0.261 0.739 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 22.643 -16.377 32.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.058 3.942 3 C -0.197 4.197 4 C -0.260 4.260 5 O -0.238 6.238 6 C 0.122 3.878 7 C -0.211 4.211 8 C -0.070 4.070 9 C 0.006 3.994 10 N -0.304 5.304 11 C 0.301 3.699 12 O -0.446 6.446 13 C -0.155 4.155 14 C 0.000 4.000 15 C -0.576 4.576 16 H 0.098 0.902 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.172 1.172 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.081 4.081 24 C -0.080 4.080 25 C -0.033 4.033 26 N -0.146 5.146 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.215 0.785 37 H 0.202 0.798 38 H 0.275 0.725 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.070 0.930 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.033 23.714 -14.721 31.702 hybrid contribution 0.332 -1.249 0.446 1.367 sum -14.700 22.466 -14.274 30.406 Atomic orbital electron populations 1.22901 0.92659 1.04644 1.05225 1.22288 0.95615 0.93245 0.83087 1.21879 1.01621 0.92133 1.04030 1.22973 1.02579 1.02889 0.97537 1.86181 1.73132 1.19168 1.45337 1.18824 0.92792 0.83560 0.92634 1.22004 1.01392 0.96128 1.01536 1.21420 0.98254 0.93056 0.94283 1.17657 1.01227 0.84561 0.95925 1.43395 1.17861 1.04423 1.64703 1.21608 0.83036 0.90020 0.75265 1.90694 1.26941 1.80424 1.46565 1.21647 1.01429 0.87661 1.04782 1.18728 0.92854 0.94192 0.94175 1.21770 1.02605 0.92437 1.40782 0.90178 1.26147 0.94798 1.04815 0.94945 1.70188 1.08396 1.36484 1.42946 0.85294 0.79069 0.78398 0.77601 1.17221 1.20855 1.21013 1.21024 0.97196 0.91055 0.98796 1.15196 1.04357 0.92774 0.95681 1.25815 0.92548 0.92317 0.92633 1.81150 1.11746 1.10074 1.11640 0.91716 0.87844 0.89632 0.92751 0.87507 0.92185 0.89571 0.87734 0.92584 0.78503 0.79799 0.72537 0.87024 0.86764 0.99900 1.00055 0.93015 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 8.11 71.98 0.58 -0.73 16 2 C 0.09 1.09 1.11 -10.79 -0.01 1.08 16 3 C -0.14 -1.44 8.75 71.98 0.63 -0.81 16 4 C -0.20 -1.77 8.07 71.98 0.58 -1.19 16 5 O -0.32 -6.68 9.22 -90.97 -0.84 -7.52 16 6 C 0.17 3.53 6.08 22.83 0.14 3.67 16 7 C -0.19 -2.41 5.73 22.32 0.13 -2.28 16 8 C -0.05 -0.62 9.95 22.42 0.22 -0.39 16 9 C 0.10 2.21 6.30 38.06 0.24 2.45 16 10 N -0.66 -14.38 5.34 -303.53 -1.62 -16.00 16 11 C 0.51 17.61 7.68 87.66 0.67 18.28 16 12 O -0.57 -26.02 13.39 -3.08 -0.04 -26.06 16 13 C -0.12 -4.14 5.64 29.85 0.17 -3.97 16 14 C 0.04 2.04 4.26 29.85 0.13 2.17 16 15 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 17 C -0.01 -0.57 5.46 84.66 0.46 -0.11 16 18 N -0.94 -59.50 13.29 21.45 0.28 -59.21 16 19 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C -0.06 -1.69 8.41 22.66 0.19 -1.50 16 24 C -0.08 -2.09 5.75 -21.23 -0.12 -2.21 16 25 C 0.28 9.50 14.86 88.33 1.31 10.81 16 26 N -0.47 -17.72 18.54 19.00 0.35 -17.37 16 27 H 0.06 0.51 8.01 -2.39 -0.02 0.50 16 28 H 0.10 0.13 7.87 -2.39 -0.02 0.11 16 29 H 0.09 0.56 4.73 -2.39 -0.01 0.55 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.76 4.46 -2.38 -0.01 0.75 16 34 H 0.10 0.31 7.93 -2.38 -0.02 0.29 16 35 H 0.06 0.65 8.11 -2.39 -0.02 0.64 16 36 H 0.20 1.11 3.56 -2.91 -0.01 1.10 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.43 5.29 8.82 -92.71 -0.82 4.47 16 39 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 41 H -0.02 -1.07 8.10 -2.38 -0.02 -1.08 16 42 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.12 4.45 6.18 -2.91 -0.02 4.43 16 Total: -1.00 -85.27 366.58 5.94 -79.32 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.22 Total: 5.25 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.56 Total: -4.10 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -0.98 Total: -92.58 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.88 Total: -33.58 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -85.27 5.94 -79.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452672059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.956 kcal (2) G-P(sol) polarization free energy of solvation -85.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds