Wall clock time and date at job start Tue Mar 31 2020 11:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47252 * 2 1 4 4 C 1.50703 * 109.47438 * 239.99956 * 2 1 3 5 5 H 1.07997 * 119.99710 * 240.00082 * 4 2 1 6 6 C 1.37878 * 119.99830 * 60.00056 * 4 2 1 7 7 N 1.31519 * 119.99667 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47434 * 89.99546 * 8 6 4 10 10 H 1.48500 * 109.47117 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47070 * 329.99858 * 8 6 4 12 12 C 1.53003 * 109.47119 * 119.99618 * 2 1 3 13 13 N 1.46495 * 109.47232 * 300.00544 * 12 2 1 14 14 C 1.34779 * 119.99673 * 179.97438 * 13 12 2 15 15 O 1.21582 * 120.00245 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99627 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47024 * 180.02562 * 17 16 14 19 19 C 1.33997 * 126.90582 * 260.01880 * 18 17 16 20 20 O 1.34450 * 110.15507 * 179.97438 * 19 18 17 21 21 C 1.34804 * 110.89096 * 0.02562 * 20 19 18 22 22 C 1.38938 * 133.49830 * 180.02562 * 21 20 19 23 23 C 1.37855 * 119.81787 * 179.97438 * 22 21 20 24 24 C 1.38741 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.36738 * 120.41799 * 359.97438 * 24 23 22 26 26 C 1.39402 * 119.71562 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47235 * 300.00039 * 1 2 3 28 28 H 1.09003 * 109.46991 * 60.00230 * 1 2 3 29 29 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47410 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47010 * 300.00298 * 3 2 1 32 32 H 1.09005 * 109.46614 * 59.99354 * 3 2 1 33 33 H 0.97001 * 119.99508 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47096 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46720 * 60.00646 * 12 2 1 36 36 H 0.96996 * 120.00160 * 359.97438 * 13 12 2 37 37 H 0.96996 * 120.00206 * 359.97438 * 16 14 13 38 38 H 1.08994 * 109.47557 * 59.99277 * 17 16 14 39 39 H 1.09001 * 109.46686 * 299.99803 * 17 16 14 40 40 H 1.08004 * 124.92306 * 359.96157 * 19 18 17 41 41 H 1.07999 * 120.09186 * 0.22478 * 22 21 20 42 42 H 1.08004 * 119.65488 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.79097 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.13846 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3214 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5751 -1.4804 3.7811 16 7 1.4278 0.1442 4.7699 17 6 1.7818 -0.3562 6.1006 18 6 1.1580 0.5257 7.1512 19 6 1.7612 1.5003 7.8454 20 8 0.8896 2.0720 8.6945 21 6 -0.3256 1.4969 8.5954 22 6 -1.5405 1.7121 9.2343 23 6 -2.6339 0.9395 8.9060 24 6 -2.5353 -0.0540 7.9426 25 6 -1.3489 -0.2818 7.3020 26 6 -0.2323 0.4894 7.6207 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 3.1300 -0.7216 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 0.9941 0.7582 2.3564 37 1 0.8710 0.9335 4.6809 38 1 2.8656 -0.3481 6.2154 39 1 1.4119 -1.3751 6.2157 40 1 2.7976 1.7851 7.7385 41 1 -1.6290 2.4852 9.9832 42 1 -3.5769 1.1087 9.4047 43 1 -3.4011 -0.6511 7.6969 44 1 -1.2774 -1.0561 6.5524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458406233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:53 Heat of formation + Delta-G solvation = -6.274021 kcal Electronic energy + Delta-G solvation = -25501.702948 eV Core-core repulsion = 21806.396733 eV Total energy + Delta-G solvation = -3695.306215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.78085 -39.54218 -38.15507 -36.58495 -35.20649 -33.27784 -32.56758 -30.86940 -30.63242 -29.75151 -26.67753 -25.70351 -25.41011 -24.34772 -23.59908 -22.59401 -20.59761 -20.49855 -18.75639 -18.27303 -17.64922 -17.12936 -16.44973 -16.05990 -15.81684 -15.60588 -15.21287 -14.71376 -14.43389 -14.12623 -13.93009 -13.76125 -13.63201 -12.98111 -12.84821 -12.63829 -12.59066 -12.35624 -12.15103 -12.00989 -11.36308 -11.18603 -11.17890 -10.84831 -10.67756 -10.47114 -10.36287 -10.19103 -9.76706 -9.60943 -9.29236 -8.98758 -8.94129 -8.77231 -8.50697 -8.39786 -8.16848 -6.00613 -4.10432 0.59854 1.05625 1.88897 2.47057 3.23254 3.29496 3.36427 3.40768 3.47567 3.65330 4.14173 4.24713 4.40419 4.58806 4.68755 4.77473 4.85239 5.04052 5.09769 5.20449 5.26208 5.40060 5.57327 5.73205 5.90941 5.97623 6.09772 6.17213 6.23346 6.32200 6.38860 6.52751 6.62041 6.82036 6.84114 6.85141 6.93180 7.05295 7.12079 7.32875 7.43912 7.58018 7.71589 8.03165 8.14565 8.40130 8.50179 8.89552 9.05836 9.55252 11.00838 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002404 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.654436 B =11642.118798 C =12030.902972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.600 6.600 16 N -0.751 5.751 17 C 0.215 3.785 18 C -0.196 4.196 19 C 0.033 3.967 20 O -0.192 6.192 21 C 0.048 3.952 22 C -0.108 4.108 23 C -0.094 4.094 24 C -0.135 4.135 25 C -0.066 4.066 26 C -0.118 4.118 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.394 0.606 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.212 0.788 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 3.849 22.908 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.479 6.479 16 N -0.408 5.408 17 C 0.091 3.909 18 C -0.198 4.198 19 C -0.033 4.033 20 O -0.093 6.093 21 C 0.001 3.999 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.119 4.119 27 H 0.024 0.976 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.228 0.772 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.928 3.234 23.007 23.750 hybrid contribution -0.175 0.226 -1.015 1.054 sum -5.103 3.460 21.993 22.840 Atomic orbital electron populations 1.21818 0.97804 0.99144 0.99984 1.18362 0.92774 0.92764 0.90565 1.21821 0.98573 0.98385 0.99992 1.20994 1.31400 1.12060 0.89871 0.92401 1.24882 0.94906 0.94919 0.98848 1.69811 1.36789 1.22749 1.23178 0.86569 0.79332 0.79374 0.82584 1.20729 1.21299 1.19895 1.21581 0.97867 0.95406 0.82393 1.45509 1.55590 1.33015 1.04573 1.16056 0.80544 0.82970 0.80644 1.90885 1.43247 1.27711 1.86106 1.45183 1.57773 1.33456 1.04427 1.19194 0.98644 0.95311 0.77777 1.21174 0.92967 1.02198 1.03419 1.23933 0.95266 0.93536 0.90595 1.84031 1.17754 1.53525 1.54004 1.19638 0.86120 0.95064 0.99042 1.19939 0.88571 1.02404 1.01752 1.20956 0.97676 0.95080 0.97493 1.20828 0.97861 0.99098 0.97485 1.20378 0.90935 0.98197 0.98893 1.19795 0.94246 0.98889 0.99006 0.97563 0.89672 0.95462 0.95446 0.89655 0.97570 0.93045 0.92961 0.92974 0.77197 0.77225 0.90660 0.90752 0.77196 0.85093 0.84786 0.85238 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.50 -13.28 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.15 3.25 4.50 -4.04 -0.02 3.23 16 13 N -0.73 -13.28 4.96 -65.22 -0.32 -13.60 16 14 C 0.70 12.44 8.57 -86.92 -0.74 11.69 16 15 O -0.60 -13.00 16.34 5.29 0.09 -12.91 16 16 N -0.75 -9.97 5.55 -66.42 -0.37 -10.34 16 17 C 0.21 2.50 6.22 -5.19 -0.03 2.47 16 18 C -0.20 -1.99 5.72 -102.66 -0.59 -2.58 16 19 C 0.03 0.29 11.89 29.24 0.35 0.63 16 20 O -0.19 -1.96 10.58 3.92 0.04 -1.92 16 21 C 0.05 0.51 7.42 -38.47 -0.29 0.22 16 22 C -0.11 -0.92 10.07 -39.46 -0.40 -1.31 16 23 C -0.09 -0.70 10.01 -39.54 -0.40 -1.09 16 24 C -0.13 -1.11 9.98 -39.94 -0.40 -1.51 16 25 C -0.07 -0.66 10.05 -39.69 -0.40 -1.05 16 26 C -0.12 -1.28 6.38 -105.16 -0.67 -1.95 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.19 8.14 -51.92 -0.42 0.76 16 36 H 0.39 6.45 6.18 -40.82 -0.25 6.20 16 37 H 0.39 4.54 8.48 -40.82 -0.35 4.19 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.21 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -30.84 363.99 -9.14 -39.99 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.13 Total: 7.94 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.43 Total: -7.23 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.17 Total: -47.12 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.13 Total: -14.83 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.84 -9.14 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458406233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds