Wall clock time and date at job start Tue Mar 31 2020 11:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47252 * 2 1 4 4 C 1.50703 * 109.47438 * 239.99956 * 2 1 3 5 5 H 1.07997 * 119.99710 * 240.00082 * 4 2 1 6 6 C 1.37878 * 119.99830 * 60.00056 * 4 2 1 7 7 N 1.31519 * 119.99667 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47434 * 89.99546 * 8 6 4 10 10 H 1.48500 * 109.47117 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47070 * 329.99858 * 8 6 4 12 12 C 1.53003 * 109.47119 * 119.99618 * 2 1 3 13 13 N 1.46495 * 109.47232 * 300.00544 * 12 2 1 14 14 C 1.34779 * 119.99673 * 179.97438 * 13 12 2 15 15 O 1.21582 * 120.00245 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99627 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47024 * 180.02562 * 17 16 14 19 19 C 1.33997 * 126.90582 * 260.01880 * 18 17 16 20 20 O 1.34450 * 110.15507 * 179.97438 * 19 18 17 21 21 C 1.34804 * 110.89096 * 0.02562 * 20 19 18 22 22 C 1.38938 * 133.49830 * 180.02562 * 21 20 19 23 23 C 1.37855 * 119.81787 * 179.97438 * 22 21 20 24 24 C 1.38741 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.36738 * 120.41799 * 359.97438 * 24 23 22 26 26 C 1.39402 * 119.71562 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47235 * 300.00039 * 1 2 3 28 28 H 1.09003 * 109.46991 * 60.00230 * 1 2 3 29 29 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47410 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47010 * 300.00298 * 3 2 1 32 32 H 1.09005 * 109.46614 * 59.99354 * 3 2 1 33 33 H 0.97001 * 119.99508 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47096 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46720 * 60.00646 * 12 2 1 36 36 H 0.96996 * 120.00160 * 359.97438 * 13 12 2 37 37 H 0.96996 * 120.00206 * 359.97438 * 16 14 13 38 38 H 1.08994 * 109.47557 * 59.99277 * 17 16 14 39 39 H 1.09001 * 109.46686 * 299.99803 * 17 16 14 40 40 H 1.08004 * 124.92306 * 359.96157 * 19 18 17 41 41 H 1.07999 * 120.09186 * 0.22478 * 22 21 20 42 42 H 1.08004 * 119.65488 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.79097 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.13846 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3214 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5751 -1.4804 3.7811 16 7 1.4278 0.1442 4.7699 17 6 1.7818 -0.3562 6.1006 18 6 1.1580 0.5257 7.1512 19 6 1.7612 1.5003 7.8454 20 8 0.8896 2.0720 8.6945 21 6 -0.3256 1.4969 8.5954 22 6 -1.5405 1.7121 9.2343 23 6 -2.6339 0.9395 8.9060 24 6 -2.5353 -0.0540 7.9426 25 6 -1.3489 -0.2818 7.3020 26 6 -0.2323 0.4894 7.6207 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 3.1300 -0.7216 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 0.9941 0.7582 2.3564 37 1 0.8710 0.9335 4.6809 38 1 2.8656 -0.3481 6.2154 39 1 1.4119 -1.3751 6.2157 40 1 2.7976 1.7851 7.7385 41 1 -1.6290 2.4852 9.9832 42 1 -3.5769 1.1087 9.4047 43 1 -3.4011 -0.6511 7.6969 44 1 -1.2774 -1.0561 6.5524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458406233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:52 Heat of formation + Delta-G solvation = -24.569657 kcal Electronic energy + Delta-G solvation = -25502.496306 eV Core-core repulsion = 21806.396733 eV Total energy + Delta-G solvation = -3696.099573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.48561 -40.99453 -38.79710 -38.29056 -36.36496 -34.98477 -33.62663 -32.52052 -31.39188 -30.48662 -27.89107 -27.55177 -27.28869 -25.93006 -24.26854 -23.24934 -22.02773 -21.30956 -20.56615 -19.58558 -18.30118 -18.03950 -17.74229 -17.25652 -16.92260 -16.69041 -16.58375 -16.48346 -15.38707 -15.22905 -15.11390 -14.94435 -14.73291 -14.64115 -14.24862 -13.99642 -13.55119 -13.28466 -13.24172 -13.14076 -13.08319 -12.72878 -12.64699 -12.58221 -12.23758 -12.12735 -11.85208 -11.50305 -11.46998 -11.20349 -10.98359 -10.69161 -10.40253 -10.30011 -9.65935 -9.62071 -9.19465 -8.01227 -6.16754 -0.05889 0.37684 1.11897 1.43528 1.46334 1.54665 1.81267 2.02066 2.21297 2.47633 2.76453 3.22482 3.47006 3.48307 3.50974 3.87758 4.10515 4.16551 4.39845 4.44157 4.46070 4.55068 4.57368 4.65340 4.69658 4.73171 4.97873 5.01601 5.07254 5.11992 5.21545 5.24786 5.31707 5.39571 5.41389 5.48068 5.53547 5.64318 5.68415 5.68556 5.68847 6.06683 6.15873 6.16302 6.23375 6.45015 6.87714 7.15154 7.50934 7.63646 8.97798 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002404 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.654436 B =11642.118798 C =12030.902972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.640 6.640 16 N -0.731 5.731 17 C 0.220 3.780 18 C -0.215 4.215 19 C 0.050 3.950 20 O -0.199 6.199 21 C 0.025 3.975 22 C -0.112 4.112 23 C -0.092 4.092 24 C -0.134 4.134 25 C -0.090 4.090 26 C -0.137 4.137 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.404 0.596 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.149 0.851 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 4.932 24.447 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.044 3.956 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.097 3.903 18 C -0.217 4.217 19 C -0.016 4.016 20 O -0.100 6.100 21 C -0.022 4.022 22 C -0.131 4.131 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.108 4.108 26 C -0.138 4.138 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.241 0.759 37 H 0.242 0.758 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.261 0.739 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.167 0.833 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.784 4.357 24.582 25.627 hybrid contribution 0.031 -0.100 -1.400 1.404 sum -5.753 4.257 23.183 24.262 Atomic orbital electron populations 1.21660 0.97200 0.98613 1.00268 1.18352 0.93182 0.93040 0.90255 1.21664 0.97964 0.97858 1.00300 1.21279 1.31667 1.12151 0.91537 0.93665 1.25455 0.95176 0.95589 1.00974 1.69914 1.37091 1.23286 1.23575 0.85754 0.78673 0.78475 0.79879 1.20513 1.20835 1.20052 1.21121 0.96738 0.94631 0.83155 1.45213 1.55820 1.33182 1.03938 1.16141 0.80208 0.82619 0.81197 1.90860 1.45085 1.29584 1.86691 1.45050 1.56711 1.33057 1.03917 1.19166 0.99009 0.95060 0.77114 1.20996 0.93233 1.03329 1.04154 1.24542 0.96116 0.92081 0.88858 1.84037 1.17964 1.53708 1.54298 1.19995 0.86820 0.95548 0.99806 1.20340 0.88082 1.02856 1.01775 1.21357 0.98648 0.94065 0.96883 1.21156 0.97818 0.99197 0.96992 1.20503 0.91741 0.98708 0.99824 1.20012 0.94697 0.99482 0.99611 0.94620 0.91913 0.96350 0.96239 0.91912 0.94570 0.93053 0.94534 0.94666 0.75931 0.75836 0.90112 0.92025 0.73909 0.83059 0.81651 0.83288 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 2 C 0.05 2.44 0.50 -52.92 -0.03 2.41 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.07 8.01 25.60 0.21 -27.87 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 8 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.17 7.28 4.50 86.38 0.39 7.67 16 13 N -0.73 -25.64 4.96 -478.53 -2.37 -28.02 16 14 C 0.70 24.45 8.57 179.05 1.53 25.98 16 15 O -0.64 -27.84 16.34 -3.97 -0.06 -27.90 16 16 N -0.73 -18.60 5.55 -482.31 -2.68 -21.28 16 17 C 0.22 4.97 6.22 85.63 0.53 5.50 16 18 C -0.22 -4.16 5.72 -18.60 -0.11 -4.27 16 19 C 0.05 0.77 11.89 66.85 0.79 1.56 16 20 O -0.20 -3.74 10.58 -8.89 -0.09 -3.83 16 21 C 0.02 0.49 7.42 22.99 0.17 0.66 16 22 C -0.11 -1.67 10.07 22.35 0.23 -1.44 16 23 C -0.09 -1.13 10.01 22.30 0.22 -0.91 16 24 C -0.13 -1.97 9.98 22.04 0.22 -1.75 16 25 C -0.09 -1.74 10.05 22.20 0.22 -1.51 16 26 C -0.14 -2.87 6.38 -20.21 -0.13 -3.00 16 27 H 0.03 1.34 6.86 -2.39 -0.02 1.32 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 32 H 0.04 1.35 6.86 -2.38 -0.02 1.33 16 33 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.40 12.44 6.18 -92.71 -0.57 11.86 16 37 H 0.41 8.64 8.48 -92.71 -0.79 7.85 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.24 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -66.82 363.99 2.54 -64.28 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.33 Total: 24.49 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.85 Total: -4.60 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -4.85 Total: -97.22 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.16 Total: -31.73 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -66.82 2.54 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458406233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.711 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds