Wall clock time and date at job start Tue Mar 31 2020 11:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 O 1.42909 * 109.46977 * 240.00305 * 2 1 3 5 5 C 1.52999 * 109.47541 * 120.00603 * 2 1 3 6 6 C 1.53001 * 109.47299 * 184.99718 * 5 2 1 7 7 N 1.46498 * 109.47283 * 185.39481 * 6 5 2 8 8 C 1.34771 * 120.00114 * 184.95923 * 7 6 5 9 9 O 1.21669 * 119.99958 * 4.56145 * 8 7 6 10 10 C 1.46889 * 120.00314 * 184.56177 * 8 7 6 11 11 C 1.36122 * 125.44226 * 185.55151 * 10 8 7 12 12 C 1.41694 * 107.75376 * 180.24294 * 11 10 8 13 13 C 1.40014 * 133.35676 * 179.82502 * 12 11 10 14 14 C 1.36573 * 119.83479 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.59942 * 359.97438 * 14 13 12 16 16 C 1.37842 * 120.63171 * 359.97438 * 15 14 13 17 17 C 1.39082 * 119.81651 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16293 * 180.02562 * 17 16 15 19 19 C 1.36885 * 125.62261 * 359.94528 * 18 17 16 20 20 H 1.07999 * 120.00079 * 126.99793 * 19 18 17 21 21 C 1.39010 * 119.99818 * 306.99812 * 19 18 17 22 22 N 1.31347 * 119.99930 * 3.44784 * 21 19 18 23 23 Si 1.86801 * 119.99958 * 183.16886 * 21 19 18 24 24 H 1.48498 * 109.47152 * 275.27659 * 23 21 19 25 25 H 1.48492 * 109.47170 * 35.27763 * 23 21 19 26 26 H 1.48503 * 109.47104 * 155.27954 * 23 21 19 27 27 H 1.09004 * 109.46791 * 299.99437 * 1 2 3 28 28 H 1.08994 * 109.47638 * 59.99598 * 1 2 3 29 29 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47406 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47543 * 300.00465 * 3 2 1 32 32 H 1.09002 * 109.47319 * 60.00536 * 3 2 1 33 33 H 0.96698 * 113.99691 * 300.00082 * 4 2 1 34 34 H 1.08999 * 109.47001 * 64.99654 * 5 2 1 35 35 H 1.09002 * 109.47089 * 304.99577 * 5 2 1 36 36 H 1.09004 * 109.46824 * 65.39281 * 6 5 2 37 37 H 1.09004 * 109.47100 * 305.40020 * 6 5 2 38 38 H 0.96994 * 119.99580 * 4.95542 * 7 6 5 39 39 H 1.08001 * 126.11945 * 0.02562 * 11 10 8 40 40 H 1.08007 * 120.08137 * 359.93644 * 13 12 11 41 41 H 1.08000 * 119.70339 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.68395 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.09041 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00256 * 354.16020 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7214 1.2491 6 6 3.5649 -0.6134 1.3135 7 7 4.0640 -1.4111 2.4364 8 6 5.3744 -1.3869 2.7503 9 8 6.1288 -0.6403 2.1554 10 6 5.8920 -2.2619 3.8106 11 6 7.1661 -2.2528 4.2897 12 6 7.2566 -3.2468 5.2954 13 6 8.2985 -3.6875 6.1204 14 6 8.0756 -4.6920 7.0184 15 6 6.8230 -5.2820 7.1225 16 6 5.7814 -4.8647 6.3219 17 6 5.9841 -3.8434 5.3998 18 7 5.1618 -3.2229 4.4840 19 6 3.8415 -3.5152 4.2715 20 1 3.1019 -2.7289 4.3063 21 6 3.4526 -4.8242 4.0110 22 7 4.3417 -5.7907 4.0356 23 14 1.6642 -5.2096 3.6336 24 1 0.9167 -5.3850 4.9047 25 1 1.0693 -4.0906 2.8598 26 1 1.5849 -6.4600 2.8363 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7209 -1.5952 -1.2330 34 1 1.7517 -1.7716 1.2054 35 1 1.6055 -0.2619 2.1369 36 1 3.8497 0.4294 1.4536 37 1 3.9951 -0.9857 0.3837 38 1 3.4513 -1.9565 2.9539 39 1 7.9657 -1.6062 3.9596 40 1 9.2762 -3.2345 6.0463 41 1 8.8807 -5.0299 7.6541 42 1 6.6630 -6.0750 7.8381 43 1 4.8107 -5.3301 6.4099 44 1 5.2819 -5.5820 4.1514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614243080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:06 Heat of formation + Delta-G solvation = -44.746710 kcal Electronic energy + Delta-G solvation = -26712.430159 eV Core-core repulsion = 23015.455643 eV Total energy + Delta-G solvation = -3696.974516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74662 -39.05224 -38.18641 -36.12859 -34.68448 -33.75462 -32.60951 -30.63079 -29.71440 -28.83777 -27.88002 -27.50813 -24.87244 -24.03166 -22.15214 -21.03781 -20.41559 -20.25695 -19.45140 -18.42357 -16.80299 -16.15764 -15.79510 -15.73583 -15.60402 -14.96884 -14.84867 -14.43702 -14.25989 -14.07615 -13.83603 -13.33868 -13.19899 -13.07253 -12.84757 -12.40929 -12.37969 -12.23730 -12.14809 -11.90435 -11.87161 -11.54715 -11.23363 -11.16310 -10.93969 -10.73022 -10.61525 -10.43840 -10.36051 -10.09684 -9.93942 -9.42445 -9.26847 -8.83985 -8.50911 -7.63652 -7.05822 -6.68331 -4.88036 1.66124 2.55045 2.94565 2.98151 3.02000 3.16524 3.71061 3.78695 4.13860 4.20513 4.37743 4.58285 4.67101 4.72707 4.80245 4.90020 5.22026 5.27777 5.46027 5.55548 5.58814 5.64926 5.70692 5.77132 5.78587 5.81920 5.94182 5.98179 6.02821 6.23349 6.23897 6.25307 6.36091 6.49799 6.69741 6.81640 6.90102 7.00843 7.20415 7.30938 7.40310 7.56937 7.58986 7.69600 7.77504 8.09088 8.24285 8.61425 8.89966 9.07253 10.12243 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004357 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.867910 B = 6425.116538 C = 7949.905050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.144 4.144 4 O -0.559 6.559 5 C -0.160 4.160 6 C 0.120 3.880 7 N -0.727 5.727 8 C 0.594 3.406 9 O -0.557 6.557 10 C -0.009 4.009 11 C -0.162 4.162 12 C -0.131 4.131 13 C -0.080 4.080 14 C -0.160 4.160 15 C -0.131 4.131 16 C -0.085 4.085 17 C 0.078 3.922 18 N -0.276 5.276 19 C -0.449 4.449 20 H 0.098 0.902 21 C 0.027 3.973 22 N -0.839 5.839 23 Si 1.084 2.916 24 H -0.275 1.275 25 H -0.278 1.278 26 H -0.272 1.272 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.377 0.623 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.414 0.586 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 5.528 -2.477 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.201 4.201 4 O -0.365 6.365 5 C -0.198 4.198 6 C -0.003 4.003 7 N -0.387 5.387 8 C 0.383 3.617 9 O -0.437 6.437 10 C -0.124 4.124 11 C -0.190 4.190 12 C -0.136 4.136 13 C -0.098 4.098 14 C -0.180 4.180 15 C -0.152 4.152 16 C -0.105 4.105 17 C -0.035 4.035 18 N 0.058 4.942 19 C -0.577 4.577 20 H 0.115 0.885 21 C -0.188 4.188 22 N -0.467 5.467 23 Si 0.907 3.093 24 H -0.201 1.201 25 H -0.203 1.203 26 H -0.197 1.197 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.224 0.776 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.259 0.741 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.673 5.318 -3.429 9.945 hybrid contribution 0.507 0.299 0.731 0.939 sum -7.165 5.617 -2.698 9.496 Atomic orbital electron populations 1.22487 0.95654 1.02601 1.02753 1.21112 0.92409 0.93089 0.84373 1.21839 1.02706 0.93365 1.02226 1.86556 1.77324 1.28979 1.43653 1.22516 0.96131 1.02041 0.99098 1.21269 0.92611 0.96177 0.90286 1.46701 1.09547 1.48476 1.33937 1.17210 0.81871 0.81033 0.81575 1.90722 1.57846 1.41133 1.53985 1.20359 0.92495 0.99790 0.99713 1.20484 0.95117 1.02451 1.00940 1.18063 0.94090 1.00212 1.01206 1.20143 0.96957 0.97204 0.95539 1.20347 0.96949 0.99446 1.01217 1.20635 0.93015 1.00927 1.00599 1.20204 0.99439 0.95844 0.95043 1.18639 0.91228 0.99156 0.94505 1.40072 1.07669 1.24470 1.21997 1.20347 0.81301 0.98121 1.57883 0.88529 1.26922 1.08232 0.90955 0.92712 1.70578 1.05245 1.34470 1.36428 0.83276 0.71065 0.77105 0.77862 1.20089 1.20291 1.19678 0.91504 0.91762 0.92177 0.91147 0.92009 0.91142 0.77597 0.90624 0.90405 0.91512 0.91423 0.74080 0.84655 0.87338 0.87436 0.87123 0.86291 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.82 37.16 0.33 -1.23 16 2 C 0.13 1.42 1.09 -90.62 -0.10 1.32 16 3 C -0.14 -1.52 8.36 37.16 0.31 -1.21 16 4 O -0.56 -6.62 12.43 -35.23 -0.44 -7.06 16 5 C -0.16 -1.99 4.60 -26.73 -0.12 -2.11 16 6 C 0.12 1.94 4.98 -4.04 -0.02 1.92 16 7 N -0.73 -14.25 5.44 -61.55 -0.33 -14.59 16 8 C 0.59 13.65 7.77 -12.76 -0.10 13.55 16 9 O -0.56 -13.61 16.83 5.22 0.09 -13.53 16 10 C -0.01 -0.23 6.77 -82.25 -0.56 -0.79 16 11 C -0.16 -3.77 10.55 -39.02 -0.41 -4.19 16 12 C -0.13 -3.01 6.16 -106.89 -0.66 -3.66 16 13 C -0.08 -1.57 10.06 -39.52 -0.40 -1.97 16 14 C -0.16 -2.95 9.97 -39.95 -0.40 -3.35 16 15 C -0.13 -2.57 10.02 -39.50 -0.40 -2.96 16 16 C -0.09 -1.94 8.25 -39.41 -0.33 -2.26 16 17 C 0.08 1.91 5.24 -83.83 -0.44 1.47 16 18 N -0.28 -6.84 2.64 -56.08 -0.15 -6.98 16 19 C -0.45 -10.66 7.75 -15.01 -0.12 -10.77 16 20 H 0.10 2.14 6.21 -52.49 -0.33 1.81 16 21 C 0.03 0.64 5.16 -17.47 -0.09 0.55 16 22 N -0.84 -21.79 12.36 55.50 0.69 -21.10 16 23 Si 1.08 19.98 29.92 -169.99 -5.09 14.90 16 24 H -0.28 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.28 -4.54 7.11 56.52 0.40 -4.14 16 26 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.38 3.32 9.04 45.56 0.41 3.73 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.08 6.64 -51.93 -0.34 0.73 16 37 H 0.07 1.16 7.68 -51.93 -0.40 0.77 16 38 H 0.41 8.09 4.33 -40.82 -0.18 7.91 16 39 H 0.14 2.89 8.06 -52.49 -0.42 2.47 16 40 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.12 2.80 7.18 -52.49 -0.38 2.42 16 44 H 0.29 8.03 5.51 -40.82 -0.22 7.80 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -29.63 358.76 -8.54 -38.16 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -5.22 Total: 20.49 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.49 Total: -15.69 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.20 Total: -42.67 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.35 Total: -20.59 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.09 Total: 14.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.63 -8.54 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614243080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.582 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds