Wall clock time and date at job start Tue Mar 31 2020 11:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 O 1.42909 * 109.46977 * 240.00305 * 2 1 3 5 5 C 1.52999 * 109.47541 * 120.00603 * 2 1 3 6 6 C 1.53001 * 109.47299 * 184.99718 * 5 2 1 7 7 N 1.46498 * 109.47283 * 185.39481 * 6 5 2 8 8 C 1.34771 * 120.00114 * 184.95923 * 7 6 5 9 9 O 1.21669 * 119.99958 * 4.56145 * 8 7 6 10 10 C 1.46889 * 120.00314 * 184.56177 * 8 7 6 11 11 C 1.36122 * 125.44226 * 185.55151 * 10 8 7 12 12 C 1.41694 * 107.75376 * 180.24294 * 11 10 8 13 13 C 1.40014 * 133.35676 * 179.82502 * 12 11 10 14 14 C 1.36573 * 119.83479 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.59942 * 359.97438 * 14 13 12 16 16 C 1.37842 * 120.63171 * 359.97438 * 15 14 13 17 17 C 1.39082 * 119.81651 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16293 * 180.02562 * 17 16 15 19 19 C 1.36885 * 125.62261 * 359.94528 * 18 17 16 20 20 H 1.07999 * 120.00079 * 126.99793 * 19 18 17 21 21 C 1.39010 * 119.99818 * 306.99812 * 19 18 17 22 22 N 1.31347 * 119.99930 * 3.44784 * 21 19 18 23 23 Si 1.86801 * 119.99958 * 183.16886 * 21 19 18 24 24 H 1.48498 * 109.47152 * 275.27659 * 23 21 19 25 25 H 1.48492 * 109.47170 * 35.27763 * 23 21 19 26 26 H 1.48503 * 109.47104 * 155.27954 * 23 21 19 27 27 H 1.09004 * 109.46791 * 299.99437 * 1 2 3 28 28 H 1.08994 * 109.47638 * 59.99598 * 1 2 3 29 29 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47406 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47543 * 300.00465 * 3 2 1 32 32 H 1.09002 * 109.47319 * 60.00536 * 3 2 1 33 33 H 0.96698 * 113.99691 * 300.00082 * 4 2 1 34 34 H 1.08999 * 109.47001 * 64.99654 * 5 2 1 35 35 H 1.09002 * 109.47089 * 304.99577 * 5 2 1 36 36 H 1.09004 * 109.46824 * 65.39281 * 6 5 2 37 37 H 1.09004 * 109.47100 * 305.40020 * 6 5 2 38 38 H 0.96994 * 119.99580 * 4.95542 * 7 6 5 39 39 H 1.08001 * 126.11945 * 0.02562 * 11 10 8 40 40 H 1.08007 * 120.08137 * 359.93644 * 13 12 11 41 41 H 1.08000 * 119.70339 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.68395 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.09041 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00256 * 354.16020 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7214 1.2491 6 6 3.5649 -0.6134 1.3135 7 7 4.0640 -1.4111 2.4364 8 6 5.3744 -1.3869 2.7503 9 8 6.1288 -0.6403 2.1554 10 6 5.8920 -2.2619 3.8106 11 6 7.1661 -2.2528 4.2897 12 6 7.2566 -3.2468 5.2954 13 6 8.2985 -3.6875 6.1204 14 6 8.0756 -4.6920 7.0184 15 6 6.8230 -5.2820 7.1225 16 6 5.7814 -4.8647 6.3219 17 6 5.9841 -3.8434 5.3998 18 7 5.1618 -3.2229 4.4840 19 6 3.8415 -3.5152 4.2715 20 1 3.1019 -2.7289 4.3063 21 6 3.4526 -4.8242 4.0110 22 7 4.3417 -5.7907 4.0356 23 14 1.6642 -5.2096 3.6336 24 1 0.9167 -5.3850 4.9047 25 1 1.0693 -4.0906 2.8598 26 1 1.5849 -6.4600 2.8363 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7209 -1.5952 -1.2330 34 1 1.7517 -1.7716 1.2054 35 1 1.6055 -0.2619 2.1369 36 1 3.8497 0.4294 1.4536 37 1 3.9951 -0.9857 0.3837 38 1 3.4513 -1.9565 2.9539 39 1 7.9657 -1.6062 3.9596 40 1 9.2762 -3.2345 6.0463 41 1 8.8807 -5.0299 7.6541 42 1 6.6630 -6.0750 7.8381 43 1 4.8107 -5.3301 6.4099 44 1 5.2819 -5.5820 4.1514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614243080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:05 Heat of formation + Delta-G solvation = -63.380210 kcal Electronic energy + Delta-G solvation = -26713.238168 eV Core-core repulsion = 23015.455643 eV Total energy + Delta-G solvation = -3697.782525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47695 -40.48283 -39.39587 -37.78741 -36.19064 -35.46884 -33.65562 -32.35478 -31.16921 -30.38052 -29.38536 -28.29831 -26.66011 -25.45409 -23.58094 -22.74491 -21.95565 -21.49231 -20.99764 -20.10092 -18.32020 -17.51736 -17.28195 -17.19802 -16.89353 -16.52356 -16.30505 -15.82129 -15.70629 -15.53508 -15.06816 -14.84975 -14.84505 -14.60032 -14.16653 -13.89009 -13.73827 -13.51960 -13.20061 -13.01023 -12.79946 -12.69875 -12.49964 -12.46347 -12.32104 -12.15523 -12.06835 -11.95447 -11.62146 -11.58173 -11.32284 -10.99529 -10.84185 -10.56291 -10.12595 -9.43953 -8.81848 -8.43358 -6.74467 -0.04536 0.92373 1.22287 1.48420 1.55509 1.73035 2.14008 2.26694 2.42791 2.67828 2.81827 3.13998 3.32159 3.71662 3.79844 3.93388 3.98916 4.06742 4.21488 4.29221 4.32629 4.39033 4.53277 4.59904 4.67778 4.73675 4.82199 4.83103 4.87919 4.97451 5.00438 5.04088 5.09983 5.12454 5.24299 5.28261 5.35399 5.40697 5.43686 5.68022 5.76296 5.79242 5.98689 6.04174 6.40506 6.53020 6.83871 6.85648 7.16817 7.28401 8.23634 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004357 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.867910 B = 6425.116538 C = 7949.905050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 C -0.147 4.147 4 O -0.577 6.577 5 C -0.152 4.152 6 C 0.120 3.880 7 N -0.717 5.717 8 C 0.587 3.413 9 O -0.582 6.582 10 C -0.038 4.038 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.082 4.082 14 C -0.151 4.151 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.053 3.947 18 N -0.293 5.293 19 C -0.458 4.458 20 H 0.108 0.892 21 C -0.009 4.009 22 N -0.869 5.869 23 Si 1.124 2.876 24 H -0.264 1.264 25 H -0.240 1.240 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.388 0.612 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.415 0.585 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 5.527 -1.676 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 C -0.204 4.204 4 O -0.386 6.386 5 C -0.190 4.190 6 C -0.003 4.003 7 N -0.374 5.374 8 C 0.376 3.624 9 O -0.464 6.464 10 C -0.152 4.152 11 C -0.199 4.199 12 C -0.156 4.156 13 C -0.101 4.101 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.060 4.060 18 N 0.040 4.960 19 C -0.584 4.584 20 H 0.126 0.874 21 C -0.217 4.217 22 N -0.498 5.498 23 Si 0.940 3.060 24 H -0.189 1.189 25 H -0.163 1.163 26 H -0.207 1.207 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.260 0.740 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.161 0.839 43 H 0.118 0.882 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.686 5.339 -2.626 10.529 hybrid contribution 0.949 0.282 0.569 1.142 sum -7.737 5.621 -2.057 9.782 Atomic orbital electron populations 1.22425 0.93468 1.03420 1.03575 1.21173 0.93921 0.92657 0.83139 1.21890 1.01414 0.93730 1.03401 1.86535 1.77888 1.30090 1.44048 1.22525 0.92969 1.02758 1.00768 1.21446 0.95298 0.95319 0.88264 1.46699 1.08364 1.48105 1.34262 1.17258 0.82866 0.80862 0.81430 1.90685 1.58605 1.42219 1.54898 1.20699 0.93308 1.00492 1.00703 1.20745 0.95255 1.02789 1.01116 1.18442 0.94753 1.00425 1.01993 1.20583 0.97435 0.97356 0.94724 1.20844 0.97493 0.98007 1.00649 1.21108 0.92575 1.00602 0.99417 1.20244 0.99927 0.96716 0.96688 1.19079 0.91966 0.99867 0.95099 1.40258 1.08145 1.24942 1.22617 1.20707 0.81506 0.98704 1.57523 0.87443 1.28432 1.11288 0.90729 0.91246 1.70695 1.04552 1.35247 1.39300 0.82880 0.66892 0.77739 0.78511 1.18890 1.16327 1.20713 0.90399 0.91238 0.91393 0.93198 0.91290 0.89592 0.76257 0.90315 0.89040 0.91625 0.92817 0.73989 0.83625 0.84219 0.82862 0.83883 0.88197 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 8.82 71.98 0.63 -1.89 16 2 C 0.13 2.63 1.09 -10.80 -0.01 2.62 16 3 C -0.15 -2.93 8.36 71.98 0.60 -2.33 16 4 O -0.58 -13.04 12.43 -148.98 -1.85 -14.89 16 5 C -0.15 -3.55 4.60 30.59 0.14 -3.41 16 6 C 0.12 3.86 4.98 86.38 0.43 4.29 16 7 N -0.72 -28.48 5.44 -466.88 -2.54 -31.02 16 8 C 0.59 27.84 7.77 86.51 0.67 28.52 16 9 O -0.58 -29.38 16.83 -4.25 -0.07 -29.45 16 10 C -0.04 -1.92 6.77 39.91 0.27 -1.65 16 11 C -0.17 -8.17 10.55 22.63 0.24 -7.93 16 12 C -0.15 -7.01 6.16 -21.34 -0.13 -7.14 16 13 C -0.08 -3.09 10.06 22.31 0.22 -2.87 16 14 C -0.15 -5.07 9.97 22.03 0.22 -4.85 16 15 C -0.12 -4.34 10.02 22.32 0.22 -4.12 16 16 C -0.12 -5.31 8.25 22.38 0.18 -5.13 16 17 C 0.05 2.65 5.24 39.06 0.20 2.86 16 18 N -0.29 -14.96 2.64 -331.34 -0.87 -15.84 16 19 C -0.46 -22.13 7.75 84.09 0.65 -21.48 16 20 H 0.11 4.77 6.21 -2.91 -0.02 4.75 16 21 C -0.01 -0.41 5.16 84.95 0.44 0.03 16 22 N -0.87 -46.49 12.36 21.67 0.27 -46.22 16 23 Si 1.12 39.31 29.92 68.60 2.05 41.37 16 24 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 25 H -0.24 -6.88 7.11 99.48 0.71 -6.17 16 26 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.18 6.47 -2.39 -0.02 1.17 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.39 6.35 9.04 -74.06 -0.67 5.68 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.14 6.64 -2.39 -0.02 2.13 16 37 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 38 H 0.42 16.25 4.33 -92.71 -0.40 15.85 16 39 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 40 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 41 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.10 4.88 7.18 -2.91 -0.02 4.86 16 44 H 0.27 15.65 5.51 -92.71 -0.51 15.14 16 Total: -1.00 -67.27 358.76 2.19 -65.07 By element: Atomic # 1 Polarization: 55.23 SS G_CDS: 0.22 Total: 55.45 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.99 Total: -24.47 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.15 Total: -93.08 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.92 Total: -44.34 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.05 Total: 41.37 kcal Total: -67.27 2.19 -65.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614243080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.691 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds