Wall clock time and date at job start Tue Mar 31 2020 12:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00161 * 2 1 4 4 C 1.39749 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.38758 * 119.92514 * 179.97438 * 4 2 1 6 6 C 1.39607 * 120.07146 * 180.02562 * 5 4 2 7 7 C 1.43203 * 120.03517 * 179.97438 * 6 5 4 8 8 N 5.87300 * 155.76541 * 180.09184 * 2 1 3 9 9 C 1.39400 * 119.92722 * 359.97438 * 6 5 4 10 10 C 1.39362 * 119.84738 * 0.02562 * 9 6 5 11 11 C 1.47767 * 120.03678 * 180.02562 * 10 9 6 12 12 O 1.21463 * 119.99763 * 180.02562 * 11 10 9 13 13 O 1.34702 * 120.00148 * 359.97438 * 11 10 9 14 14 C 1.45194 * 117.00083 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47458 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47115 * 300.00183 * 15 14 13 17 17 C 1.53005 * 109.47093 * 59.99701 * 15 14 13 18 18 C 1.50697 * 109.47313 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00096 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00003 * 179.97438 * 18 15 14 21 21 N 1.31513 * 119.99695 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00086 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.46942 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46866 * 120.00362 * 22 20 18 25 25 H 1.48502 * 109.47295 * 240.00001 * 22 20 18 26 26 C 1.38725 * 119.92179 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.47099 * 270.00359 * 1 2 3 28 28 H 1.08993 * 109.46998 * 29.99825 * 1 2 3 29 29 H 1.08992 * 109.47263 * 150.00213 * 1 2 3 30 30 H 1.08999 * 109.46815 * 269.99849 * 3 2 1 31 31 H 1.08990 * 109.47066 * 29.99635 * 3 2 1 32 32 H 1.09000 * 109.47121 * 150.00070 * 3 2 1 33 33 H 1.07997 * 119.96016 * 0.02614 * 5 4 2 34 34 H 1.08004 * 120.07890 * 179.97438 * 9 6 5 35 35 H 1.09008 * 109.47229 * 299.99938 * 14 13 11 36 36 H 1.08998 * 109.47339 * 60.00009 * 14 13 11 37 37 H 1.09003 * 109.47190 * 59.99410 * 16 15 14 38 38 H 1.08992 * 109.47303 * 179.97438 * 16 15 14 39 39 H 1.09006 * 109.47043 * 299.99577 * 16 15 14 40 40 H 1.08997 * 109.46936 * 60.00097 * 17 15 14 41 41 H 1.08992 * 109.47323 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47014 * 300.00469 * 17 15 14 43 43 H 0.97005 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.96063 * 359.70363 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1638 -1.2103 0.0005 5 6 3.5513 -1.2084 0.0000 6 6 4.2525 -2.4157 0.0000 7 6 5.6845 -2.4129 -0.0011 8 7 6.8204 -2.4107 -0.0039 9 6 3.5570 -3.6238 0.0011 10 6 2.1634 -3.6219 0.0016 11 6 1.4220 -4.9001 0.0033 12 8 0.2073 -4.8976 0.0033 13 8 2.0931 -6.0680 0.0039 14 6 1.2998 -7.2841 0.0050 15 6 2.2293 -8.4995 0.0061 16 6 3.1121 -8.4675 -1.2432 17 6 3.1122 -8.4652 1.2553 18 6 1.4060 -9.7616 0.0079 19 1 0.3276 -9.7029 0.0078 20 6 2.0294 -10.9914 0.0086 21 7 3.3426 -11.0629 0.0082 22 14 1.0089 -12.5560 0.0101 23 1 -0.4341 -12.2056 0.0097 24 1 1.3244 -13.3539 -1.2019 25 1 1.3251 -13.3522 1.2231 26 6 1.4685 -2.4107 0.0005 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.3792 1.5833 -1.0277 31 1 1.6085 2.0283 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0894 -0.2721 -0.0004 34 1 4.0969 -4.5592 0.0007 35 1 0.6713 -7.3072 0.8953 36 1 0.6706 -7.3084 -0.8847 37 1 3.7076 -7.5545 -1.2440 38 1 3.7745 -9.3330 -1.2422 39 1 2.4832 -8.4920 -2.1332 40 1 2.4833 -8.4879 2.1453 41 1 3.7746 -9.3307 1.2559 42 1 3.7077 -7.5522 1.2544 43 1 3.7812 -11.9281 0.0091 44 1 0.3885 -2.4085 0.0050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816021239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:41 Heat of formation + Delta-G solvation = -21.519734 kcal Electronic energy + Delta-G solvation = -25687.565776 eV Core-core repulsion = 21991.598457 eV Total energy + Delta-G solvation = -3695.967318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53744 -39.42637 -37.22949 -36.66627 -35.88548 -34.85364 -31.96080 -31.27072 -30.62241 -28.80383 -26.00569 -25.61055 -25.24771 -25.19341 -23.92549 -23.05261 -20.48738 -18.85419 -18.80152 -17.12039 -16.86216 -16.29262 -15.85288 -15.81336 -15.62423 -15.57198 -15.43776 -14.67231 -14.31827 -14.09617 -13.47200 -13.22918 -13.13303 -13.01011 -12.93631 -12.88997 -12.55625 -12.52224 -12.37714 -11.96393 -11.86396 -11.50353 -11.48324 -11.19367 -10.98420 -10.67621 -10.41909 -10.31851 -10.22887 -10.13467 -9.90743 -9.42767 -9.32567 -9.27279 -8.74980 -8.37735 -7.71097 -6.01859 -4.13483 0.36409 0.91386 2.44863 2.46290 2.65720 3.08774 3.15502 3.27159 3.35816 3.40257 3.65497 3.75006 4.37629 4.51008 4.63080 4.72117 4.83652 4.90692 5.02396 5.04367 5.18034 5.24003 5.24775 5.28059 5.37478 5.42155 5.72143 5.98041 6.05235 6.09549 6.12106 6.22421 6.46463 6.72837 6.77561 6.98839 6.99419 7.00728 7.14699 7.14821 7.32313 7.40540 7.62910 7.70645 8.06019 8.11146 8.20983 8.39192 8.86732 9.52204 10.99348 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.002915 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.570054 B = 9603.545912 C =10832.459700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.637 5.637 3 C 0.092 3.908 4 C 0.201 3.799 5 C -0.125 4.125 6 C 0.007 3.993 7 C 0.259 3.741 8 N -0.413 5.413 9 C -0.068 4.068 10 C -0.067 4.067 11 C 0.500 3.500 12 O -0.512 6.512 13 O -0.340 6.340 14 C 0.085 3.915 15 C 0.070 3.930 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.511 4.511 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.108 4.108 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.260 0.740 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 23.624 -0.012 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.349 5.349 3 C -0.051 4.051 4 C 0.100 3.900 5 C -0.150 4.150 6 C 0.003 3.997 7 C -0.057 4.057 8 N -0.088 5.088 9 C -0.091 4.091 10 C -0.069 4.069 11 C 0.344 3.656 12 O -0.403 6.403 13 O -0.256 6.256 14 C 0.013 3.987 15 C 0.070 3.930 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.131 4.131 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.359 23.608 -0.017 23.647 hybrid contribution -1.201 -0.895 0.005 1.498 sum -2.560 22.713 -0.011 22.857 Atomic orbital electron populations 1.21716 0.78855 1.03109 1.01635 1.46270 1.05237 1.02641 1.80790 1.21676 0.97271 0.84753 1.01410 1.17316 0.90414 0.85972 0.96291 1.20769 0.92103 0.97395 1.04770 1.15522 0.84317 0.93892 1.05961 1.25535 0.92455 0.93844 0.93867 1.81259 1.11934 1.07136 1.08437 1.21382 0.92950 0.97741 0.97006 1.18840 0.92757 0.90896 1.04406 1.20976 0.85982 0.85202 0.73418 1.90793 1.14814 1.88531 1.46121 1.86572 1.42013 1.14830 1.82177 1.23744 0.94431 0.79777 1.00797 1.18257 0.92343 0.88616 0.93806 1.21779 0.99780 1.00415 0.96822 1.21779 0.99778 1.00408 0.96826 1.20967 0.92742 0.89681 1.51573 0.92420 1.24858 0.94952 0.98862 0.94695 1.69842 1.07556 1.24494 1.50072 0.86490 0.80480 0.83158 0.77601 1.19764 1.20985 1.20978 1.20972 1.01073 0.89224 1.01805 0.92957 0.91272 0.90820 0.93088 0.91256 0.91226 0.84553 0.83156 0.92305 0.92304 0.96410 0.89737 0.95778 0.95774 0.89741 0.96415 0.92948 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.18 59.85 0.61 1.11 16 2 N -0.64 -4.49 3.41 -187.64 -0.64 -5.13 16 3 C 0.09 0.42 10.18 59.85 0.61 1.02 16 4 C 0.20 1.82 6.54 -83.88 -0.55 1.28 16 5 C -0.13 -1.08 8.91 -38.88 -0.35 -1.43 16 6 C 0.01 0.07 5.72 -107.03 -0.61 -0.54 16 7 C 0.26 3.08 15.32 -22.47 -0.34 2.74 16 8 N -0.41 -5.81 18.54 41.84 0.78 -5.03 16 9 C -0.07 -0.83 9.31 -38.73 -0.36 -1.19 16 10 C -0.07 -0.88 5.87 -105.06 -0.62 -1.50 16 11 C 0.50 8.51 7.90 34.63 0.27 8.79 16 12 O -0.51 -9.69 16.12 -19.24 -0.31 -10.00 16 13 O -0.34 -6.51 8.12 -40.50 -0.33 -6.84 16 14 C 0.09 1.83 4.27 37.16 0.16 1.99 16 15 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 16 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 17 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 18 C -0.51 -13.48 8.01 -34.44 -0.28 -13.76 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 21 N -0.88 -23.84 9.35 55.43 0.52 -23.32 16 22 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.11 -1.18 8.75 -38.88 -0.34 -1.52 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 29 H 0.07 0.45 6.19 -51.93 -0.32 0.13 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.07 0.28 6.19 -51.93 -0.32 -0.04 16 33 H 0.14 0.88 6.12 -52.49 -0.32 0.56 16 34 H 0.15 1.92 7.60 -52.48 -0.40 1.52 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 42 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.15 1.54 5.70 -52.49 -0.30 1.24 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -29.86 369.62 -6.81 -36.68 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.00 Total: -2.33 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.37 Total: -5.28 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.65 Total: -33.48 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.64 Total: -16.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.86 -6.81 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.158 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds