Wall clock time and date at job start Tue Mar 31 2020 12:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00161 * 2 1 4 4 C 1.39749 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.38758 * 119.92514 * 179.97438 * 4 2 1 6 6 C 1.39607 * 120.07146 * 180.02562 * 5 4 2 7 7 C 1.43203 * 120.03517 * 179.97438 * 6 5 4 8 8 N 5.87300 * 155.76541 * 180.09184 * 2 1 3 9 9 C 1.39400 * 119.92722 * 359.97438 * 6 5 4 10 10 C 1.39362 * 119.84738 * 0.02562 * 9 6 5 11 11 C 1.47767 * 120.03678 * 180.02562 * 10 9 6 12 12 O 1.21463 * 119.99763 * 180.02562 * 11 10 9 13 13 O 1.34702 * 120.00148 * 359.97438 * 11 10 9 14 14 C 1.45194 * 117.00083 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47458 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47115 * 300.00183 * 15 14 13 17 17 C 1.53005 * 109.47093 * 59.99701 * 15 14 13 18 18 C 1.50697 * 109.47313 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00096 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00003 * 179.97438 * 18 15 14 21 21 N 1.31513 * 119.99695 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00086 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.46942 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46866 * 120.00362 * 22 20 18 25 25 H 1.48502 * 109.47295 * 240.00001 * 22 20 18 26 26 C 1.38725 * 119.92179 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.47099 * 270.00359 * 1 2 3 28 28 H 1.08993 * 109.46998 * 29.99825 * 1 2 3 29 29 H 1.08992 * 109.47263 * 150.00213 * 1 2 3 30 30 H 1.08999 * 109.46815 * 269.99849 * 3 2 1 31 31 H 1.08990 * 109.47066 * 29.99635 * 3 2 1 32 32 H 1.09000 * 109.47121 * 150.00070 * 3 2 1 33 33 H 1.07997 * 119.96016 * 0.02614 * 5 4 2 34 34 H 1.08004 * 120.07890 * 179.97438 * 9 6 5 35 35 H 1.09008 * 109.47229 * 299.99938 * 14 13 11 36 36 H 1.08998 * 109.47339 * 60.00009 * 14 13 11 37 37 H 1.09003 * 109.47190 * 59.99410 * 16 15 14 38 38 H 1.08992 * 109.47303 * 179.97438 * 16 15 14 39 39 H 1.09006 * 109.47043 * 299.99577 * 16 15 14 40 40 H 1.08997 * 109.46936 * 60.00097 * 17 15 14 41 41 H 1.08992 * 109.47323 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47014 * 300.00469 * 17 15 14 43 43 H 0.97005 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.96063 * 359.70363 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1638 -1.2103 0.0005 5 6 3.5513 -1.2084 0.0000 6 6 4.2525 -2.4157 0.0000 7 6 5.6845 -2.4129 -0.0011 8 7 6.8204 -2.4107 -0.0039 9 6 3.5570 -3.6238 0.0011 10 6 2.1634 -3.6219 0.0016 11 6 1.4220 -4.9001 0.0033 12 8 0.2073 -4.8976 0.0033 13 8 2.0931 -6.0680 0.0039 14 6 1.2998 -7.2841 0.0050 15 6 2.2293 -8.4995 0.0061 16 6 3.1121 -8.4675 -1.2432 17 6 3.1122 -8.4652 1.2553 18 6 1.4060 -9.7616 0.0079 19 1 0.3276 -9.7029 0.0078 20 6 2.0294 -10.9914 0.0086 21 7 3.3426 -11.0629 0.0082 22 14 1.0089 -12.5560 0.0101 23 1 -0.4341 -12.2056 0.0097 24 1 1.3244 -13.3539 -1.2019 25 1 1.3251 -13.3522 1.2231 26 6 1.4685 -2.4107 0.0005 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.3792 1.5833 -1.0277 31 1 1.6085 2.0283 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0894 -0.2721 -0.0004 34 1 4.0969 -4.5592 0.0007 35 1 0.6713 -7.3072 0.8953 36 1 0.6706 -7.3084 -0.8847 37 1 3.7076 -7.5545 -1.2440 38 1 3.7745 -9.3330 -1.2422 39 1 2.4832 -8.4920 -2.1332 40 1 2.4833 -8.4879 2.1453 41 1 3.7746 -9.3307 1.2559 42 1 3.7077 -7.5522 1.2544 43 1 3.7812 -11.9281 0.0091 44 1 0.3885 -2.4085 0.0050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816021239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:40 Heat of formation + Delta-G solvation = -35.532356 kcal Electronic energy + Delta-G solvation = -25688.173408 eV Core-core repulsion = 21991.598457 eV Total energy + Delta-G solvation = -3696.574951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68058 -40.53073 -38.27748 -38.05856 -36.77744 -36.58691 -33.30650 -32.77877 -31.41988 -29.30670 -27.64312 -27.54765 -27.13459 -25.89322 -24.98844 -24.05346 -21.58598 -20.68299 -19.73992 -18.44798 -17.80313 -17.68401 -17.31878 -17.13142 -16.81199 -16.49819 -16.37693 -15.98511 -15.06211 -15.02743 -14.93407 -14.70847 -14.64246 -14.36330 -13.83334 -13.68184 -13.41568 -13.34645 -13.27771 -13.18596 -13.07790 -12.96053 -12.82083 -12.81156 -12.58250 -12.32235 -12.18482 -12.12062 -11.70091 -11.69502 -11.25295 -11.17608 -10.96550 -10.70691 -10.39199 -10.18024 -8.34277 -8.03056 -6.21000 -0.53930 -0.01119 1.39903 1.43233 1.46012 1.53566 1.55934 1.68838 2.01508 2.20186 2.46943 2.75664 2.82907 3.20697 3.57815 3.91186 4.02961 4.12186 4.17617 4.23877 4.30582 4.31351 4.48647 4.60385 4.61631 4.65809 4.83447 4.87329 4.93818 5.00377 5.01147 5.07843 5.15120 5.20734 5.23416 5.25254 5.35778 5.40193 5.58237 5.66152 5.67212 6.10062 6.20284 6.23506 6.36308 6.38702 6.39080 6.72976 6.85271 7.47159 8.96685 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.002915 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.570054 B = 9603.545912 C =10832.459700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.636 5.636 3 C 0.083 3.917 4 C 0.209 3.791 5 C -0.103 4.103 6 C 0.010 3.990 7 C 0.281 3.719 8 N -0.451 5.451 9 C -0.074 4.074 10 C -0.081 4.081 11 C 0.500 3.500 12 O -0.536 6.536 13 O -0.346 6.346 14 C 0.097 3.903 15 C 0.062 3.938 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.531 4.531 19 H 0.051 0.949 20 C 0.027 3.973 21 N -0.901 5.901 22 Si 0.952 3.048 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.107 4.107 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 26.190 -0.007 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.346 5.346 3 C -0.058 4.058 4 C 0.105 3.895 5 C -0.128 4.128 6 C 0.006 3.994 7 C -0.034 4.034 8 N -0.127 5.127 9 C -0.097 4.097 10 C -0.083 4.083 11 C 0.346 3.654 12 O -0.428 6.428 13 O -0.261 6.261 14 C 0.024 3.976 15 C 0.061 3.939 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.569 4.569 19 H 0.070 0.930 20 C -0.173 4.173 21 N -0.539 5.539 22 Si 0.778 3.222 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.796 26.219 -0.011 26.280 hybrid contribution -1.110 -1.504 0.003 1.870 sum -2.906 24.715 -0.008 24.885 Atomic orbital electron populations 1.21858 0.78102 1.03803 1.02148 1.46561 1.05965 1.02662 1.79443 1.21921 0.97731 0.83774 1.02415 1.17318 0.90599 0.86250 0.95324 1.21026 0.91949 0.97749 1.02105 1.15402 0.83457 0.94017 1.06519 1.25602 0.92433 0.92671 0.92665 1.81286 1.13049 1.08381 1.09942 1.21214 0.92509 0.98073 0.97933 1.18559 0.92892 0.89506 1.07352 1.21620 0.86026 0.85488 0.72238 1.90772 1.15866 1.88719 1.47426 1.86554 1.41851 1.14964 1.82765 1.23303 0.93698 0.80327 1.00266 1.18262 0.92602 0.89128 0.93875 1.21634 0.99387 1.00064 0.96688 1.21634 0.99384 1.00056 0.96692 1.21240 0.92751 0.91044 1.51857 0.93046 1.25517 0.95906 1.01417 0.94466 1.69959 1.08583 1.25037 1.50320 0.85596 0.79169 0.79855 0.77539 1.19531 1.20699 1.20688 1.20987 1.01202 0.89170 1.01681 0.92517 0.89115 0.91670 0.92159 0.89529 0.90425 0.81597 0.84313 0.92847 0.92841 0.94878 0.91982 0.95987 0.95984 0.91986 0.94883 0.92933 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.18 127.77 1.30 2.01 16 2 N -0.64 -6.79 3.41 -747.57 -2.55 -9.34 16 3 C 0.08 0.41 10.18 127.77 1.30 1.71 16 4 C 0.21 3.20 6.54 38.12 0.25 3.45 16 5 C -0.10 -1.45 8.91 22.72 0.20 -1.25 16 6 C 0.01 0.19 5.72 -21.42 -0.12 0.07 16 7 C 0.28 6.29 15.32 88.33 1.35 7.65 16 8 N -0.45 -12.27 18.54 19.00 0.35 -11.91 16 9 C -0.07 -1.75 9.31 22.82 0.21 -1.53 16 10 C -0.08 -2.10 5.87 -20.15 -0.12 -2.21 16 11 C 0.50 17.15 7.90 70.34 0.56 17.71 16 12 O -0.54 -20.51 16.12 19.96 0.32 -20.19 16 13 O -0.35 -13.35 8.12 -56.12 -0.46 -13.80 16 14 C 0.10 4.25 4.27 71.98 0.31 4.56 16 15 C 0.06 3.00 0.58 -52.93 -0.03 2.97 16 16 C -0.12 -5.76 8.11 71.98 0.58 -5.18 16 17 C -0.12 -5.76 8.11 71.98 0.58 -5.18 16 18 C -0.53 -28.36 8.01 25.60 0.21 -28.15 16 19 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 20 C 0.03 1.43 5.15 84.66 0.44 1.86 16 21 N -0.90 -49.32 9.35 21.45 0.20 -49.12 16 22 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C -0.11 -2.19 8.75 22.72 0.20 -1.99 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 29 H 0.06 0.68 6.19 -2.39 -0.01 0.67 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.18 8.07 -2.39 -0.02 0.16 16 32 H 0.08 0.28 6.19 -2.39 -0.01 0.26 16 33 H 0.17 1.38 6.12 -2.91 -0.02 1.36 16 34 H 0.14 3.55 7.60 -2.91 -0.02 3.53 16 35 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 37 H 0.03 1.43 7.68 -2.39 -0.02 1.41 16 38 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 39 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 42 H 0.03 1.43 7.68 -2.39 -0.02 1.41 16 43 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 44 H 0.15 2.95 5.70 -2.91 -0.02 2.93 16 Total: -1.00 -64.41 369.62 8.13 -56.28 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.02 Total: 6.91 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 7.22 Total: -3.51 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -2.00 Total: -70.38 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.13 Total: -33.99 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -64.41 8.13 -56.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.746 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds