Wall clock time and date at job start Tue Mar 31 2020 12:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39870 * 125.46117 * 2 1 4 4 C 1.30251 * 110.08421 * 179.97438 * 3 2 1 5 5 C 1.50692 * 126.10548 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47082 * 89.98205 * 5 4 3 7 7 O 1.20829 * 119.99892 * 359.97438 * 6 5 4 8 8 O 1.34224 * 120.00110 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99990 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47108 * 300.00280 * 10 9 8 12 12 C 1.53001 * 109.47297 * 59.99966 * 10 9 8 13 13 C 1.50696 * 109.47467 * 179.97438 * 10 9 8 14 14 H 1.07998 * 119.99754 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00150 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00226 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99830 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47403 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47016 * 120.00493 * 17 15 13 20 20 H 1.48503 * 109.47250 * 240.00179 * 17 15 13 21 21 C 1.45930 * 107.78273 * 359.80313 * 4 3 2 22 22 C 1.39943 * 134.02301 * 179.51260 * 21 4 3 23 23 C 1.36469 * 119.63200 * 180.36864 * 22 21 4 24 24 C 1.38964 * 120.63024 * 0.27730 * 23 22 21 25 25 C 1.36584 * 120.81296 * 359.97438 * 24 23 22 26 26 C 1.37040 * 125.45841 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47072 * 270.02336 * 1 2 3 28 28 H 1.09002 * 109.46769 * 30.02188 * 1 2 3 29 29 H 1.08998 * 109.46840 * 150.02011 * 1 2 3 30 30 H 1.09000 * 109.47422 * 209.97896 * 5 4 3 31 31 H 1.08998 * 109.47757 * 329.98257 * 5 4 3 32 32 H 1.09002 * 109.47349 * 300.00069 * 9 8 6 33 33 H 1.08998 * 109.47266 * 59.99863 * 9 8 6 34 34 H 1.08996 * 109.46989 * 59.99804 * 11 10 9 35 35 H 1.09003 * 109.47242 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46668 * 299.99716 * 11 10 9 37 37 H 1.09004 * 109.47074 * 59.99517 * 12 10 9 38 38 H 1.08994 * 109.47548 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.47276 * 300.00306 * 12 10 9 40 40 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.18724 * 0.65153 * 22 21 4 42 42 H 1.08002 * 119.68444 * 180.25911 * 23 22 21 43 43 H 1.08002 * 119.59384 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.07494 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5324 0.7939 0.0005 5 6 4.7114 1.7323 0.0002 6 6 5.1038 2.0465 1.4209 7 8 4.4888 1.5587 2.3395 8 8 6.1366 2.8681 1.6659 9 6 6.4576 3.1263 3.0583 10 6 7.6531 4.0778 3.1381 11 6 8.8596 3.4401 2.4462 12 6 7.3038 5.3950 2.4426 13 6 7.9860 4.3462 4.5831 14 1 7.4034 3.8840 5.3662 15 6 9.0349 5.1810 4.9053 16 7 9.7446 5.7434 3.9517 17 14 9.4479 5.5131 6.6966 18 1 8.5066 4.7656 7.5685 19 1 10.8377 5.0698 6.9746 20 1 9.3282 6.9677 6.9708 21 6 3.5936 -0.6641 0.0057 22 6 4.6398 -1.5936 -0.0001 23 6 4.3564 -2.9285 0.0001 24 6 3.0397 -3.3728 0.0002 25 6 2.0017 -2.4849 0.0006 26 6 2.2600 -1.1162 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 5.5502 1.2618 -0.5128 31 1 4.4418 2.6545 -0.5146 32 1 5.5983 3.5810 3.5511 33 1 6.7061 2.1878 3.5539 34 1 8.6185 3.2463 1.4010 35 1 9.7112 4.1181 2.5026 36 1 9.1084 2.5017 2.9417 37 1 6.4442 5.8493 2.9354 38 1 8.1556 6.0728 2.4990 39 1 7.0628 5.2013 1.3973 40 1 10.4828 6.3305 4.1784 41 1 5.6658 -1.2564 -0.0001 42 1 5.1631 -3.6466 -0.0002 43 1 2.8345 -4.4331 -0.0001 44 1 0.9829 -2.8433 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817727631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:21 Heat of formation + Delta-G solvation = -4.230719 kcal Electronic energy + Delta-G solvation = -25849.707064 eV Core-core repulsion = 22154.489454 eV Total energy + Delta-G solvation = -3695.217610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48462 -39.83942 -37.39833 -36.61432 -34.83172 -34.26192 -31.33300 -30.63888 -30.43268 -29.92387 -26.26718 -25.59813 -25.44632 -24.92782 -23.14253 -22.11019 -21.27897 -19.58283 -18.82347 -17.29322 -17.24482 -17.07454 -15.89881 -15.82256 -15.78897 -15.42254 -15.34625 -14.62166 -14.32302 -14.24441 -13.58297 -13.30882 -13.22304 -13.05846 -12.86592 -12.67057 -12.26315 -12.01130 -11.90162 -11.71807 -11.42386 -11.23240 -11.17306 -10.96259 -10.81282 -10.66247 -10.39975 -10.26196 -10.16129 -9.96593 -9.87162 -9.39011 -9.29394 -8.81571 -8.73274 -8.36807 -8.00957 -6.01004 -4.12376 0.78540 1.35619 2.12605 2.24456 2.62958 3.27608 3.30984 3.36328 3.42188 3.69024 4.13363 4.29583 4.40038 4.44148 4.77239 4.81781 4.95409 5.01762 5.16537 5.21111 5.24566 5.25558 5.32267 5.37748 5.48617 5.64020 5.82895 6.10911 6.13260 6.16563 6.30596 6.36442 6.49373 6.65282 6.76938 6.87746 7.00397 7.09158 7.16055 7.17828 7.42593 7.48392 7.64249 7.71611 8.07097 8.16771 8.27415 8.41191 8.87878 9.53202 11.00227 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.002656 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.162684 B =10541.252728 C =10860.560619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.408 5.408 3 N -0.236 5.236 4 C 0.116 3.884 5 C -0.037 4.037 6 C 0.458 3.542 7 O -0.510 6.510 8 O -0.347 6.347 9 C 0.086 3.914 10 C 0.070 3.930 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.163 4.163 22 C -0.036 4.036 23 C -0.161 4.161 24 C -0.071 4.071 25 C -0.143 4.143 26 C 0.128 3.872 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 -14.972 -12.429 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.196 5.196 3 N -0.049 5.049 4 C -0.062 4.062 5 C -0.076 4.076 6 C 0.299 3.701 7 O -0.398 6.398 8 O -0.262 6.262 9 C 0.013 3.987 10 C 0.070 3.930 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.133 4.133 16 N -0.520 5.520 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.171 4.171 22 C -0.056 4.056 23 C -0.181 4.181 24 C -0.091 4.091 25 C -0.165 4.165 26 C 0.014 3.986 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.103 0.897 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.818 -13.967 -12.140 23.707 hybrid contribution 0.480 -0.499 1.266 1.443 sum -14.338 -14.466 -10.874 23.088 Atomic orbital electron populations 1.21734 0.74056 1.04059 1.03090 1.48062 1.05739 1.00973 1.64864 1.76543 1.01950 1.08452 1.17963 1.22652 0.92248 0.91578 0.99698 1.19600 0.94548 0.99940 0.93510 1.23085 0.78773 0.76830 0.91389 1.90667 1.52489 1.49962 1.46717 1.86502 1.46078 1.59425 1.34244 1.23682 0.99689 1.00004 0.75331 1.18248 0.88477 0.90426 0.95882 1.21771 1.01621 0.99466 0.95875 1.21778 1.01146 0.99967 0.95895 1.20987 1.15061 1.28419 0.90493 0.92482 1.24850 0.95771 0.95378 0.97339 1.69838 1.19881 1.31072 1.31243 0.86497 0.78243 0.78017 0.85015 1.19783 1.20954 1.20964 1.19692 0.93296 0.92420 1.11712 1.20412 0.97974 0.92110 0.95115 1.20660 0.96737 0.95363 1.05347 1.20703 0.92270 0.99235 0.96939 1.19770 0.99935 0.88760 1.08077 1.18811 0.90510 0.89608 0.99707 0.91218 0.89391 0.89864 0.85487 0.85739 0.92591 0.92522 0.96356 0.89745 0.95828 0.95847 0.89736 0.96358 0.92967 0.85356 0.85512 0.85429 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.91 11.40 59.85 0.68 1.59 16 2 N -0.41 -5.33 4.05 -65.47 -0.27 -5.59 16 3 N -0.24 -3.62 12.40 34.84 0.43 -3.19 16 4 C 0.12 1.70 5.93 -80.19 -0.48 1.23 16 5 C -0.04 -0.48 6.41 -29.04 -0.19 -0.66 16 6 C 0.46 8.20 7.95 36.01 0.29 8.49 16 7 O -0.51 -10.79 15.78 -18.75 -0.30 -11.09 16 8 O -0.35 -6.86 8.88 -39.24 -0.35 -7.21 16 9 C 0.09 1.92 4.26 37.16 0.16 2.08 16 10 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 11 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 12 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 13 C -0.51 -13.77 8.01 -34.44 -0.28 -14.04 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 16 N -0.88 -23.98 9.35 55.43 0.52 -23.47 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.16 -2.27 6.33 -105.21 -0.67 -2.94 16 22 C -0.04 -0.42 10.07 -39.58 -0.40 -0.81 16 23 C -0.16 -1.57 9.97 -39.95 -0.40 -1.97 16 24 C -0.07 -0.63 9.96 -39.91 -0.40 -1.03 16 25 C -0.14 -1.44 9.97 -39.79 -0.40 -1.83 16 26 C 0.13 1.66 6.87 -84.17 -0.58 1.08 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -32.91 369.42 -8.10 -41.01 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.46 Total: -0.84 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.23 Total: -11.10 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.69 Total: -32.25 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.64 Total: -18.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.91 -8.10 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817727631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.780 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds