Wall clock time and date at job start Tue Mar 31 2020 12:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39870 * 125.46117 * 2 1 4 4 C 1.30251 * 110.08421 * 179.97438 * 3 2 1 5 5 C 1.50692 * 126.10548 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47082 * 89.98205 * 5 4 3 7 7 O 1.20829 * 119.99892 * 359.97438 * 6 5 4 8 8 O 1.34224 * 120.00110 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99990 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47108 * 300.00280 * 10 9 8 12 12 C 1.53001 * 109.47297 * 59.99966 * 10 9 8 13 13 C 1.50696 * 109.47467 * 179.97438 * 10 9 8 14 14 H 1.07998 * 119.99754 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00150 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00226 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99830 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47403 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47016 * 120.00493 * 17 15 13 20 20 H 1.48503 * 109.47250 * 240.00179 * 17 15 13 21 21 C 1.45930 * 107.78273 * 359.80313 * 4 3 2 22 22 C 1.39943 * 134.02301 * 179.51260 * 21 4 3 23 23 C 1.36469 * 119.63200 * 180.36864 * 22 21 4 24 24 C 1.38964 * 120.63024 * 0.27730 * 23 22 21 25 25 C 1.36584 * 120.81296 * 359.97438 * 24 23 22 26 26 C 1.37040 * 125.45841 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47072 * 270.02336 * 1 2 3 28 28 H 1.09002 * 109.46769 * 30.02188 * 1 2 3 29 29 H 1.08998 * 109.46840 * 150.02011 * 1 2 3 30 30 H 1.09000 * 109.47422 * 209.97896 * 5 4 3 31 31 H 1.08998 * 109.47757 * 329.98257 * 5 4 3 32 32 H 1.09002 * 109.47349 * 300.00069 * 9 8 6 33 33 H 1.08998 * 109.47266 * 59.99863 * 9 8 6 34 34 H 1.08996 * 109.46989 * 59.99804 * 11 10 9 35 35 H 1.09003 * 109.47242 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46668 * 299.99716 * 11 10 9 37 37 H 1.09004 * 109.47074 * 59.99517 * 12 10 9 38 38 H 1.08994 * 109.47548 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.47276 * 300.00306 * 12 10 9 40 40 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.18724 * 0.65153 * 22 21 4 42 42 H 1.08002 * 119.68444 * 180.25911 * 23 22 21 43 43 H 1.08002 * 119.59384 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.07494 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5324 0.7939 0.0005 5 6 4.7114 1.7323 0.0002 6 6 5.1038 2.0465 1.4209 7 8 4.4888 1.5587 2.3395 8 8 6.1366 2.8681 1.6659 9 6 6.4576 3.1263 3.0583 10 6 7.6531 4.0778 3.1381 11 6 8.8596 3.4401 2.4462 12 6 7.3038 5.3950 2.4426 13 6 7.9860 4.3462 4.5831 14 1 7.4034 3.8840 5.3662 15 6 9.0349 5.1810 4.9053 16 7 9.7446 5.7434 3.9517 17 14 9.4479 5.5131 6.6966 18 1 8.5066 4.7656 7.5685 19 1 10.8377 5.0698 6.9746 20 1 9.3282 6.9677 6.9708 21 6 3.5936 -0.6641 0.0057 22 6 4.6398 -1.5936 -0.0001 23 6 4.3564 -2.9285 0.0001 24 6 3.0397 -3.3728 0.0002 25 6 2.0017 -2.4849 0.0006 26 6 2.2600 -1.1162 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 5.5502 1.2618 -0.5128 31 1 4.4418 2.6545 -0.5146 32 1 5.5983 3.5810 3.5511 33 1 6.7061 2.1878 3.5539 34 1 8.6185 3.2463 1.4010 35 1 9.7112 4.1181 2.5026 36 1 9.1084 2.5017 2.9417 37 1 6.4442 5.8493 2.9354 38 1 8.1556 6.0728 2.4990 39 1 7.0628 5.2013 1.3973 40 1 10.4828 6.3305 4.1784 41 1 5.6658 -1.2564 -0.0001 42 1 5.1631 -3.6466 -0.0002 43 1 2.8345 -4.4331 -0.0001 44 1 0.9829 -2.8433 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817727631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:20 Heat of formation + Delta-G solvation = -21.619564 kcal Electronic energy + Delta-G solvation = -25850.461101 eV Core-core repulsion = 22154.489454 eV Total energy + Delta-G solvation = -3695.971647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39013 -41.34717 -38.41355 -38.11247 -36.61615 -35.21132 -33.29158 -31.57728 -31.29156 -30.79547 -27.67823 -27.54566 -27.20032 -26.40624 -23.98759 -23.04741 -22.51746 -20.72493 -20.60996 -18.78573 -18.13085 -18.01105 -17.70747 -17.37190 -17.19922 -16.63762 -16.27037 -16.13512 -15.26660 -15.00562 -14.97477 -14.85953 -14.58396 -14.27988 -13.91701 -13.64813 -13.56825 -13.40349 -13.15415 -13.11090 -12.81936 -12.74636 -12.65949 -12.59873 -12.31554 -12.14100 -11.98964 -11.75687 -11.70980 -11.67252 -11.27082 -11.21432 -10.92298 -10.71750 -10.40129 -9.66823 -8.84072 -8.04637 -6.22615 -0.05754 0.54571 1.13812 1.20437 1.40603 1.41580 1.44807 1.54716 2.01461 2.45911 2.86000 3.18674 3.21919 3.43476 3.66221 3.83595 4.09432 4.14995 4.25318 4.28656 4.29822 4.35905 4.41899 4.46074 4.54431 4.59236 4.62423 4.63339 4.87151 4.93750 5.05793 5.06998 5.21926 5.26243 5.32830 5.39648 5.50537 5.60051 5.60659 5.66169 5.67311 5.89635 6.10181 6.10706 6.19534 6.38193 6.54034 6.74894 6.83741 7.45397 8.95085 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.002656 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.162684 B =10541.252728 C =10860.560619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.414 5.414 3 N -0.270 5.270 4 C 0.097 3.903 5 C -0.027 4.027 6 C 0.460 3.540 7 O -0.546 6.546 8 O -0.346 6.346 9 C 0.099 3.901 10 C 0.062 3.938 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.029 3.971 16 N -0.898 5.898 17 Si 0.951 3.049 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.280 1.280 21 C -0.194 4.194 22 C -0.057 4.057 23 C -0.160 4.160 24 C -0.067 4.067 25 C -0.147 4.147 26 C 0.106 3.894 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.314 -16.866 -13.294 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.203 5.203 3 N -0.084 5.084 4 C -0.080 4.080 5 C -0.065 4.065 6 C 0.303 3.697 7 O -0.436 6.436 8 O -0.262 6.262 9 C 0.025 3.975 10 C 0.062 3.938 11 C -0.177 4.177 12 C -0.178 4.178 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.171 4.171 16 N -0.536 5.536 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.202 4.202 22 C -0.078 4.078 23 C -0.179 4.179 24 C -0.087 4.087 25 C -0.169 4.169 26 C -0.008 4.008 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.179 0.821 31 H 0.164 0.836 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.181 0.819 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.372 -15.862 -13.023 25.642 hybrid contribution 0.573 -0.022 1.499 1.605 sum -14.799 -15.885 -11.525 24.580 Atomic orbital electron populations 1.22069 0.71943 1.05886 1.03855 1.48401 1.06960 1.00496 1.64463 1.76412 1.02719 1.10326 1.18969 1.22863 0.92358 0.92461 1.00312 1.19750 0.95481 1.01154 0.90143 1.24014 0.77310 0.75269 0.93070 1.90651 1.53423 1.51185 1.48360 1.86492 1.47171 1.60252 1.32297 1.23237 0.98405 0.98990 0.76855 1.18263 0.89509 0.91107 0.94963 1.21624 1.00462 0.98621 0.96975 1.21643 0.99949 0.99298 0.96931 1.21238 1.15490 1.28982 0.91622 0.93543 1.25482 0.95638 0.95169 1.00788 1.69939 1.19970 1.31102 1.32624 0.85617 0.77982 0.77829 0.80845 1.19929 1.20369 1.20532 1.20022 0.94614 0.92412 1.13120 1.20671 0.98072 0.92857 0.96176 1.21075 0.98135 0.95046 1.03631 1.21184 0.91599 1.00932 0.95022 1.20191 1.01839 0.87561 1.07265 1.19274 0.90395 0.90733 1.00435 0.90921 0.88813 0.86862 0.82089 0.83641 0.93828 0.93301 0.94386 0.91816 0.96058 0.96381 0.91731 0.94506 0.92791 0.84561 0.82986 0.81858 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 11.40 127.77 1.46 3.01 16 2 N -0.41 -10.62 4.05 -361.04 -1.46 -12.08 16 3 N -0.27 -8.35 12.40 -43.70 -0.54 -8.90 16 4 C 0.10 2.83 5.93 44.78 0.27 3.10 16 5 C -0.03 -0.67 6.41 29.10 0.19 -0.49 16 6 C 0.46 16.38 7.95 71.24 0.57 16.95 16 7 O -0.55 -23.54 15.78 21.95 0.35 -23.19 16 8 O -0.35 -13.55 8.88 -51.36 -0.46 -14.00 16 9 C 0.10 4.48 4.26 71.98 0.31 4.78 16 10 C 0.06 3.06 0.58 -52.93 -0.03 3.03 16 11 C -0.12 -5.67 8.11 71.98 0.58 -5.08 16 12 C -0.12 -5.82 8.11 71.98 0.58 -5.24 16 13 C -0.54 -29.17 8.01 25.60 0.21 -28.96 16 14 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 15 C 0.03 1.58 5.15 84.65 0.44 2.01 16 16 N -0.90 -48.98 9.35 21.45 0.20 -48.78 16 17 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.19 -5.30 6.33 -20.24 -0.13 -5.43 16 22 C -0.06 -1.28 10.07 22.27 0.22 -1.05 16 23 C -0.16 -2.71 9.97 22.03 0.22 -2.49 16 24 C -0.07 -0.98 9.96 22.06 0.22 -0.76 16 25 C -0.15 -2.58 9.97 22.13 0.22 -2.36 16 26 C 0.11 2.64 6.87 39.21 0.27 2.91 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.16 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 33 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 34 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 35 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 36 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 39 H 0.04 1.59 7.68 -2.38 -0.02 1.57 16 40 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -72.18 369.42 6.69 -65.49 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.99 Total: 12.48 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.58 Total: -16.06 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.80 Total: -69.76 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.11 Total: -37.20 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.18 6.69 -65.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817727631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds