Wall clock time and date at job start Tue Mar 31 2020 10:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47189 * 2 1 4 4 C 1.52999 * 109.46903 * 59.99813 * 3 2 1 5 5 C 1.52998 * 109.46969 * 300.00062 * 3 2 1 6 6 C 1.50700 * 109.47069 * 179.97438 * 3 2 1 7 7 N 1.29944 * 126.28768 * 0.02798 * 6 3 2 8 8 O 1.21308 * 110.24799 * 179.97438 * 7 6 3 9 9 C 1.33638 * 109.81331 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.55179 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47426 * 269.97524 * 10 9 8 12 12 C 1.38326 * 119.97001 * 89.99637 * 11 10 9 13 13 C 1.38276 * 120.14259 * 180.02562 * 12 11 10 14 14 C 1.38129 * 120.06676 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93070 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07123 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99460 * 354.45941 * 16 15 14 18 18 H 1.07998 * 120.00343 * 5.06053 * 17 16 15 19 19 C 1.38660 * 119.99698 * 185.05705 * 17 16 15 20 20 N 1.31554 * 120.00126 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47124 * 90.00078 * 21 19 17 23 23 H 1.48500 * 109.47277 * 210.00093 * 21 19 17 24 24 H 1.48503 * 109.47193 * 330.00332 * 21 19 17 25 25 C 1.38084 * 119.96170 * 269.72808 * 11 10 9 26 26 N 1.31135 * 106.89837 * 359.76476 * 9 8 7 27 27 H 1.08997 * 109.46880 * 299.99879 * 1 2 3 28 28 H 1.09003 * 109.47126 * 59.99959 * 1 2 3 29 29 H 1.08997 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47233 * 240.00398 * 2 1 3 31 31 H 1.08995 * 109.47283 * 120.00323 * 2 1 3 32 32 H 1.08995 * 109.47535 * 300.00011 * 4 3 2 33 33 H 1.09000 * 109.46518 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47043 * 60.00184 * 4 3 2 35 35 H 1.09006 * 109.47269 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47120 * 299.99584 * 5 3 2 37 37 H 1.09005 * 109.47190 * 60.00154 * 5 3 2 38 38 H 1.08997 * 109.47362 * 29.97603 * 10 9 8 39 39 H 1.09003 * 109.47122 * 149.97163 * 10 9 8 40 40 H 1.07999 * 119.92368 * 359.97438 * 12 11 10 41 41 H 1.07991 * 119.96496 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03315 * 180.02562 * 14 13 12 43 43 H 0.96999 * 119.99866 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.03958 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 7 4.3161 0.3951 0.0006 8 8 5.4819 0.7302 0.0007 9 6 5.5699 2.0637 0.0014 10 6 6.8369 2.8795 0.0022 11 6 7.2585 3.1513 1.4233 12 6 8.1004 2.2684 2.0752 13 6 8.4890 2.5141 3.3793 14 6 8.0376 3.6429 4.0350 15 6 7.1924 4.5311 3.3833 16 8 6.7475 5.6417 4.0248 17 6 7.0691 5.7657 5.3283 18 1 7.7230 5.0435 5.7943 19 6 6.5604 6.8207 6.0705 20 7 5.7635 7.7002 5.5031 21 14 7.0066 6.9930 7.8763 22 1 8.2340 7.8188 8.0063 23 1 5.8893 7.6492 8.6018 24 1 7.2512 5.6479 8.4562 25 6 6.8082 4.2844 2.0714 26 7 4.3430 2.5267 -0.0035 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.4400 2.1638 1.2493 33 1 1.8937 3.1913 1.2494 34 1 1.8933 1.6499 2.1392 35 1 1.8930 3.1916 -1.2490 36 1 1.8934 1.6499 -2.1392 37 1 0.4400 2.1638 -1.2492 38 1 7.6245 2.3280 -0.5112 39 1 6.6609 3.8245 -0.5117 40 1 8.4543 1.3849 1.5647 41 1 9.1461 1.8226 3.8856 42 1 8.3418 3.8345 5.0534 43 1 5.4073 8.4380 6.0224 44 1 6.1547 4.9759 1.5604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867173756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:02 Heat of formation + Delta-G solvation = 46.741495 kcal Electronic energy + Delta-G solvation = -25872.204730 eV Core-core repulsion = 22179.197440 eV Total energy + Delta-G solvation = -3693.007289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.42417 -39.15416 -38.27328 -36.89662 -35.19778 -33.44017 -32.30598 -30.94583 -30.30217 -29.24691 -27.46220 -27.09522 -25.46586 -25.21755 -23.17356 -22.59326 -21.67997 -20.85210 -19.11477 -18.07395 -17.65963 -17.21367 -16.90375 -15.72441 -15.16769 -14.90713 -14.88214 -14.52827 -14.45260 -14.21172 -13.76621 -13.56834 -13.55022 -13.07474 -12.68000 -12.51567 -12.45771 -12.33134 -12.00952 -11.87028 -11.63010 -11.57137 -11.38118 -11.32513 -11.26484 -11.08624 -10.99128 -10.86048 -10.73624 -10.67196 -10.59158 -10.48157 -9.73889 -9.38678 -8.88197 -8.22478 -7.31519 -6.47930 -4.07278 1.27188 1.94078 2.28128 2.41585 3.02805 3.11058 3.12290 3.16646 3.61505 3.93447 4.04819 4.46422 4.65173 4.68684 4.79058 4.91400 5.06697 5.12162 5.15603 5.17509 5.32591 5.38088 5.46007 5.54203 5.56864 5.60429 5.70344 5.72653 5.75687 5.81839 5.84450 5.86847 5.95058 5.98945 6.08610 6.16882 6.19891 6.27262 6.28777 6.55342 6.82374 7.00256 7.14847 7.28209 7.37084 7.71385 7.96179 8.32720 8.97325 9.66267 10.69794 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003255 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.797261 B = 8600.499247 C = 9866.232090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.029 3.971 4 C -0.142 4.142 5 C -0.139 4.139 6 C 0.180 3.820 7 N -0.389 5.389 8 O 0.072 5.928 9 C 0.198 3.802 10 C 0.020 3.980 11 C -0.061 4.061 12 C -0.199 4.199 13 C -0.075 4.075 14 C -0.227 4.227 15 C 0.151 3.849 16 O -0.175 6.175 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.168 4.168 26 N -0.473 5.473 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -12.180 -11.409 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C 0.028 3.972 4 C -0.200 4.200 5 C -0.197 4.197 6 C -0.093 4.093 7 N -0.098 5.098 8 O 0.015 5.985 9 C -0.022 4.022 10 C -0.019 4.019 11 C -0.063 4.063 12 C -0.218 4.218 13 C -0.093 4.093 14 C -0.247 4.247 15 C 0.097 3.903 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.187 4.187 26 N -0.206 5.206 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.425 -12.271 -11.422 17.620 hybrid contribution 0.543 0.076 1.105 1.234 sum -4.882 -12.195 -10.317 16.703 Atomic orbital electron populations 1.21896 0.95010 1.01880 1.02357 1.21508 0.96231 0.94132 1.02955 1.18969 0.82709 0.97424 0.98135 1.21920 1.01297 1.01309 0.95447 1.21894 1.01408 1.00994 0.95354 1.25722 0.99646 0.83665 1.00281 1.74570 0.89331 1.23924 1.21970 1.85268 1.22334 1.24990 1.65926 1.28783 0.96919 0.81896 0.94594 1.19113 0.87835 0.98303 0.96665 1.18857 0.98778 0.95514 0.93120 1.20475 1.04557 1.00761 0.96049 1.20721 0.98178 0.96214 0.94200 1.21247 1.04128 0.97396 1.01890 1.19299 0.92023 0.87018 0.91911 1.83984 1.66049 1.33369 1.24457 1.21324 1.30305 1.12555 0.82755 0.89068 1.25290 0.95853 0.95124 1.00172 1.70037 1.29615 1.12955 1.36867 0.85721 0.78377 0.78962 0.80432 1.19823 1.20209 1.19194 1.20068 1.05401 0.99353 0.93868 1.71871 0.99500 1.29088 1.20170 0.92043 0.92203 0.92525 0.91543 0.91407 0.91045 0.91081 0.92426 0.91291 0.92708 0.91039 0.87470 0.86552 0.87227 0.87208 0.85458 0.91965 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.21 37.16 0.34 -0.90 16 2 C -0.11 -1.16 4.49 -26.73 -0.12 -1.28 16 3 C 0.03 0.36 0.77 -155.66 -0.12 0.24 16 4 C -0.14 -1.72 8.10 37.16 0.30 -1.42 16 5 C -0.14 -1.43 8.10 37.16 0.30 -1.13 16 6 C 0.18 2.72 6.40 -156.37 -1.00 1.72 16 7 N -0.39 -6.10 11.47 30.90 0.35 -5.74 16 8 O 0.07 1.09 11.31 18.11 0.20 1.30 16 9 C 0.20 2.95 7.75 -13.06 -0.10 2.85 16 10 C 0.02 0.25 5.97 -29.04 -0.17 0.08 16 11 C -0.06 -1.03 5.11 -104.65 -0.54 -1.56 16 12 C -0.20 -3.26 9.70 -39.54 -0.38 -3.64 16 13 C -0.07 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.23 -4.84 9.17 -39.39 -0.36 -5.20 16 15 C 0.15 3.60 6.65 -39.11 -0.26 3.34 16 16 O -0.18 -4.95 9.76 0.04 0.00 -4.95 16 17 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 21 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 25 C -0.17 -3.44 9.64 -39.39 -0.38 -3.82 16 26 N -0.47 -7.66 11.55 -9.87 -0.11 -7.78 16 27 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.69 6.43 -51.93 -0.33 0.35 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 38 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.12 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -31.57 366.92 -7.09 -38.65 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.11 Total: 4.02 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.69 Total: -22.06 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.00 Total: -37.82 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.21 Total: -3.66 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.57 -7.09 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867173756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.396 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds