Wall clock time and date at job start Tue Mar 31 2020 10:46:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.47189 * 2 1
4 4 C 1.52999 * 109.46903 * 59.99813 * 3 2 1
5 5 C 1.52998 * 109.46969 * 300.00062 * 3 2 1
6 6 C 1.50700 * 109.47069 * 179.97438 * 3 2 1
7 7 N 1.29944 * 126.28768 * 0.02798 * 6 3 2
8 8 O 1.21308 * 110.24799 * 179.97438 * 7 6 3
9 9 C 1.33638 * 109.81331 * 0.02562 * 8 7 6
10 10 C 1.50693 * 126.55179 * 179.97438 * 9 8 7
11 11 C 1.50696 * 109.47426 * 269.97524 * 10 9 8
12 12 C 1.38326 * 119.97001 * 89.99637 * 11 10 9
13 13 C 1.38276 * 120.14259 * 180.02562 * 12 11 10
14 14 C 1.38129 * 120.06676 * 359.97438 * 13 12 11
15 15 C 1.38852 * 119.93070 * 0.02562 * 14 13 12
16 16 O 1.35751 * 120.07123 * 180.02562 * 15 14 13
17 17 C 1.34831 * 116.99460 * 354.45941 * 16 15 14
18 18 H 1.07998 * 120.00343 * 5.06053 * 17 16 15
19 19 C 1.38660 * 119.99698 * 185.05705 * 17 16 15
20 20 N 1.31554 * 120.00126 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99804 * 180.02562 * 19 17 16
22 22 H 1.48506 * 109.47124 * 90.00078 * 21 19 17
23 23 H 1.48500 * 109.47277 * 210.00093 * 21 19 17
24 24 H 1.48503 * 109.47193 * 330.00332 * 21 19 17
25 25 C 1.38084 * 119.96170 * 269.72808 * 11 10 9
26 26 N 1.31135 * 106.89837 * 359.76476 * 9 8 7
27 27 H 1.08997 * 109.46880 * 299.99879 * 1 2 3
28 28 H 1.09003 * 109.47126 * 59.99959 * 1 2 3
29 29 H 1.08997 * 109.47119 * 179.97438 * 1 2 3
30 30 H 1.09009 * 109.47233 * 240.00398 * 2 1 3
31 31 H 1.08995 * 109.47283 * 120.00323 * 2 1 3
32 32 H 1.08995 * 109.47535 * 300.00011 * 4 3 2
33 33 H 1.09000 * 109.46518 * 179.97438 * 4 3 2
34 34 H 1.09003 * 109.47043 * 60.00184 * 4 3 2
35 35 H 1.09006 * 109.47269 * 179.97438 * 5 3 2
36 36 H 1.09001 * 109.47120 * 299.99584 * 5 3 2
37 37 H 1.09005 * 109.47190 * 60.00154 * 5 3 2
38 38 H 1.08997 * 109.47362 * 29.97603 * 10 9 8
39 39 H 1.09003 * 109.47122 * 149.97163 * 10 9 8
40 40 H 1.07999 * 119.92368 * 359.97438 * 12 11 10
41 41 H 1.07991 * 119.96496 * 179.97438 * 13 12 11
42 42 H 1.08001 * 120.03315 * 180.02562 * 14 13 12
43 43 H 0.96999 * 119.99866 * 179.97438 * 20 19 17
44 44 H 1.07994 * 120.03958 * 359.97438 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.5300 2.1638 1.2492
5 6 1.5300 2.1638 -1.2492
6 6 3.5470 1.4425 0.0006
7 7 4.3161 0.3951 0.0006
8 8 5.4819 0.7302 0.0007
9 6 5.5699 2.0637 0.0014
10 6 6.8369 2.8795 0.0022
11 6 7.2585 3.1513 1.4233
12 6 8.1004 2.2684 2.0752
13 6 8.4890 2.5141 3.3793
14 6 8.0376 3.6429 4.0350
15 6 7.1924 4.5311 3.3833
16 8 6.7475 5.6417 4.0248
17 6 7.0691 5.7657 5.3283
18 1 7.7230 5.0435 5.7943
19 6 6.5604 6.8207 6.0705
20 7 5.7635 7.7002 5.5031
21 14 7.0066 6.9930 7.8763
22 1 8.2340 7.8188 8.0063
23 1 5.8893 7.6492 8.6018
24 1 7.2512 5.6479 8.4562
25 6 6.8082 4.2844 2.0714
26 7 4.3430 2.5267 -0.0035
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8934 -0.5138 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 0.4400 2.1638 1.2493
33 1 1.8937 3.1913 1.2494
34 1 1.8933 1.6499 2.1392
35 1 1.8930 3.1916 -1.2490
36 1 1.8934 1.6499 -2.1392
37 1 0.4400 2.1638 -1.2492
38 1 7.6245 2.3280 -0.5112
39 1 6.6609 3.8245 -0.5117
40 1 8.4543 1.3849 1.5647
41 1 9.1461 1.8226 3.8856
42 1 8.3418 3.8345 5.0534
43 1 5.4073 8.4380 6.0224
44 1 6.1547 4.9759 1.5604
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000867173756.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:02
Heat of formation + Delta-G solvation = 46.741495 kcal
Electronic energy + Delta-G solvation = -25872.204730 eV
Core-core repulsion = 22179.197440 eV
Total energy + Delta-G solvation = -3693.007289 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-45.42417 -39.15416 -38.27328 -36.89662 -35.19778 -33.44017 -32.30598 -30.94583
-30.30217 -29.24691 -27.46220 -27.09522 -25.46586 -25.21755 -23.17356 -22.59326
-21.67997 -20.85210 -19.11477 -18.07395 -17.65963 -17.21367 -16.90375 -15.72441
-15.16769 -14.90713 -14.88214 -14.52827 -14.45260 -14.21172 -13.76621 -13.56834
-13.55022 -13.07474 -12.68000 -12.51567 -12.45771 -12.33134 -12.00952 -11.87028
-11.63010 -11.57137 -11.38118 -11.32513 -11.26484 -11.08624 -10.99128 -10.86048
-10.73624 -10.67196 -10.59158 -10.48157 -9.73889 -9.38678 -8.88197 -8.22478
-7.31519 -6.47930 -4.07278 1.27188 1.94078 2.28128 2.41585 3.02805
3.11058 3.12290 3.16646 3.61505 3.93447 4.04819 4.46422 4.65173
4.68684 4.79058 4.91400 5.06697 5.12162 5.15603 5.17509 5.32591
5.38088 5.46007 5.54203 5.56864 5.60429 5.70344 5.72653 5.75687
5.81839 5.84450 5.86847 5.95058 5.98945 6.08610 6.16882 6.19891
6.27262 6.28777 6.55342 6.82374 7.00256 7.14847 7.28209 7.37084
7.71385 7.96179 8.32720 8.97325 9.66267 10.69794
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.013697 B = 0.003255 C = 0.002837
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.797261 B = 8600.499247 C = 9866.232090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.110 4.110
3 C 0.029 3.971
4 C -0.142 4.142
5 C -0.139 4.139
6 C 0.180 3.820
7 N -0.389 5.389
8 O 0.072 5.928
9 C 0.198 3.802
10 C 0.020 3.980
11 C -0.061 4.061
12 C -0.199 4.199
13 C -0.075 4.075
14 C -0.227 4.227
15 C 0.151 3.849
16 O -0.175 6.175
17 C -0.393 4.393
18 H 0.092 0.908
19 C 0.040 3.960
20 N -0.860 5.860
21 Si 0.941 3.059
22 H -0.273 1.273
23 H -0.277 1.277
24 H -0.267 1.267
25 C -0.168 4.168
26 N -0.473 5.473
27 H 0.061 0.939
28 H 0.059 0.941
29 H 0.056 0.944
30 H 0.066 0.934
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.057 0.943
35 H 0.068 0.932
36 H 0.054 0.946
37 H 0.071 0.929
38 H 0.107 0.893
39 H 0.116 0.884
40 H 0.110 0.890
41 H 0.110 0.890
42 H 0.128 0.872
43 H 0.270 0.730
44 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.536 -12.180 -11.409 17.295
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.148 4.148
3 C 0.028 3.972
4 C -0.200 4.200
5 C -0.197 4.197
6 C -0.093 4.093
7 N -0.098 5.098
8 O 0.015 5.985
9 C -0.022 4.022
10 C -0.019 4.019
11 C -0.063 4.063
12 C -0.218 4.218
13 C -0.093 4.093
14 C -0.247 4.247
15 C 0.097 3.903
16 O -0.079 6.079
17 C -0.469 4.469
18 H 0.109 0.891
19 C -0.164 4.164
20 N -0.495 5.495
21 Si 0.765 3.235
22 H -0.198 1.198
23 H -0.202 1.202
24 H -0.192 1.192
25 C -0.187 4.187
26 N -0.206 5.206
27 H 0.080 0.920
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.085 0.915
31 H 0.086 0.914
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.076 0.924
35 H 0.087 0.913
36 H 0.073 0.927
37 H 0.090 0.910
38 H 0.125 0.875
39 H 0.134 0.866
40 H 0.128 0.872
41 H 0.128 0.872
42 H 0.145 0.855
43 H 0.080 0.920
44 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -5.425 -12.271 -11.422 17.620
hybrid contribution 0.543 0.076 1.105 1.234
sum -4.882 -12.195 -10.317 16.703
Atomic orbital electron populations
1.21896 0.95010 1.01880 1.02357 1.21508 0.96231 0.94132 1.02955
1.18969 0.82709 0.97424 0.98135 1.21920 1.01297 1.01309 0.95447
1.21894 1.01408 1.00994 0.95354 1.25722 0.99646 0.83665 1.00281
1.74570 0.89331 1.23924 1.21970 1.85268 1.22334 1.24990 1.65926
1.28783 0.96919 0.81896 0.94594 1.19113 0.87835 0.98303 0.96665
1.18857 0.98778 0.95514 0.93120 1.20475 1.04557 1.00761 0.96049
1.20721 0.98178 0.96214 0.94200 1.21247 1.04128 0.97396 1.01890
1.19299 0.92023 0.87018 0.91911 1.83984 1.66049 1.33369 1.24457
1.21324 1.30305 1.12555 0.82755 0.89068 1.25290 0.95853 0.95124
1.00172 1.70037 1.29615 1.12955 1.36867 0.85721 0.78377 0.78962
0.80432 1.19823 1.20209 1.19194 1.20068 1.05401 0.99353 0.93868
1.71871 0.99500 1.29088 1.20170 0.92043 0.92203 0.92525 0.91543
0.91407 0.91045 0.91081 0.92426 0.91291 0.92708 0.91039 0.87470
0.86552 0.87227 0.87208 0.85458 0.91965 0.86097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 9.21 37.16 0.34 -0.90 16
2 C -0.11 -1.16 4.49 -26.73 -0.12 -1.28 16
3 C 0.03 0.36 0.77 -155.66 -0.12 0.24 16
4 C -0.14 -1.72 8.10 37.16 0.30 -1.42 16
5 C -0.14 -1.43 8.10 37.16 0.30 -1.13 16
6 C 0.18 2.72 6.40 -156.37 -1.00 1.72 16
7 N -0.39 -6.10 11.47 30.90 0.35 -5.74 16
8 O 0.07 1.09 11.31 18.11 0.20 1.30 16
9 C 0.20 2.95 7.75 -13.06 -0.10 2.85 16
10 C 0.02 0.25 5.97 -29.04 -0.17 0.08 16
11 C -0.06 -1.03 5.11 -104.65 -0.54 -1.56 16
12 C -0.20 -3.26 9.70 -39.54 -0.38 -3.64 16
13 C -0.07 -1.33 10.04 -39.61 -0.40 -1.73 16
14 C -0.23 -4.84 9.17 -39.39 -0.36 -5.20 16
15 C 0.15 3.60 6.65 -39.11 -0.26 3.34 16
16 O -0.18 -4.95 9.76 0.04 0.00 -4.95 16
17 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16
18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16
19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16
20 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16
21 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16
22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
24 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16
25 C -0.17 -3.44 9.64 -39.39 -0.38 -3.82 16
26 N -0.47 -7.66 11.55 -9.87 -0.11 -7.78 16
27 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16
28 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16
31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
32 H 0.07 0.69 6.43 -51.93 -0.33 0.35 16
33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16
38 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16
39 H 0.12 1.33 8.08 -51.93 -0.42 0.91 16
40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16
41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16
42 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16
43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16
44 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16
LS Contribution 366.92 15.07 5.53 5.53
Total: -1.00 -31.57 366.92 -7.09 -38.65
By element:
Atomic # 1 Polarization: 10.13 SS G_CDS: -6.11 Total: 4.02 kcal
Atomic # 6 Polarization: -19.37 SS G_CDS: -2.69 Total: -22.06 kcal
Atomic # 7 Polarization: -38.82 SS G_CDS: 1.00 Total: -37.82 kcal
Atomic # 8 Polarization: -3.86 SS G_CDS: 0.21 Total: -3.66 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -31.57 -7.09 -38.65 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000867173756.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.396 kcal
(2) G-P(sol) polarization free energy of solvation -31.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds