Wall clock time and date at job start Tue Mar 31 2020 10:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47189 * 2 1 4 4 C 1.52999 * 109.46903 * 59.99813 * 3 2 1 5 5 C 1.52998 * 109.46969 * 300.00062 * 3 2 1 6 6 C 1.50700 * 109.47069 * 179.97438 * 3 2 1 7 7 N 1.29944 * 126.28768 * 0.02798 * 6 3 2 8 8 O 1.21308 * 110.24799 * 179.97438 * 7 6 3 9 9 C 1.33638 * 109.81331 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.55179 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47426 * 269.97524 * 10 9 8 12 12 C 1.38326 * 119.97001 * 89.99637 * 11 10 9 13 13 C 1.38276 * 120.14259 * 180.02562 * 12 11 10 14 14 C 1.38129 * 120.06676 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93070 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07123 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99460 * 354.45941 * 16 15 14 18 18 H 1.07998 * 120.00343 * 5.06053 * 17 16 15 19 19 C 1.38660 * 119.99698 * 185.05705 * 17 16 15 20 20 N 1.31554 * 120.00126 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47124 * 90.00078 * 21 19 17 23 23 H 1.48500 * 109.47277 * 210.00093 * 21 19 17 24 24 H 1.48503 * 109.47193 * 330.00332 * 21 19 17 25 25 C 1.38084 * 119.96170 * 269.72808 * 11 10 9 26 26 N 1.31135 * 106.89837 * 359.76476 * 9 8 7 27 27 H 1.08997 * 109.46880 * 299.99879 * 1 2 3 28 28 H 1.09003 * 109.47126 * 59.99959 * 1 2 3 29 29 H 1.08997 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47233 * 240.00398 * 2 1 3 31 31 H 1.08995 * 109.47283 * 120.00323 * 2 1 3 32 32 H 1.08995 * 109.47535 * 300.00011 * 4 3 2 33 33 H 1.09000 * 109.46518 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47043 * 60.00184 * 4 3 2 35 35 H 1.09006 * 109.47269 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47120 * 299.99584 * 5 3 2 37 37 H 1.09005 * 109.47190 * 60.00154 * 5 3 2 38 38 H 1.08997 * 109.47362 * 29.97603 * 10 9 8 39 39 H 1.09003 * 109.47122 * 149.97163 * 10 9 8 40 40 H 1.07999 * 119.92368 * 359.97438 * 12 11 10 41 41 H 1.07991 * 119.96496 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03315 * 180.02562 * 14 13 12 43 43 H 0.96999 * 119.99866 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.03958 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 7 4.3161 0.3951 0.0006 8 8 5.4819 0.7302 0.0007 9 6 5.5699 2.0637 0.0014 10 6 6.8369 2.8795 0.0022 11 6 7.2585 3.1513 1.4233 12 6 8.1004 2.2684 2.0752 13 6 8.4890 2.5141 3.3793 14 6 8.0376 3.6429 4.0350 15 6 7.1924 4.5311 3.3833 16 8 6.7475 5.6417 4.0248 17 6 7.0691 5.7657 5.3283 18 1 7.7230 5.0435 5.7943 19 6 6.5604 6.8207 6.0705 20 7 5.7635 7.7002 5.5031 21 14 7.0066 6.9930 7.8763 22 1 8.2340 7.8188 8.0063 23 1 5.8893 7.6492 8.6018 24 1 7.2512 5.6479 8.4562 25 6 6.8082 4.2844 2.0714 26 7 4.3430 2.5267 -0.0035 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.4400 2.1638 1.2493 33 1 1.8937 3.1913 1.2494 34 1 1.8933 1.6499 2.1392 35 1 1.8930 3.1916 -1.2490 36 1 1.8934 1.6499 -2.1392 37 1 0.4400 2.1638 -1.2492 38 1 7.6245 2.3280 -0.5112 39 1 6.6609 3.8245 -0.5117 40 1 8.4543 1.3849 1.5647 41 1 9.1461 1.8226 3.8856 42 1 8.3418 3.8345 5.0534 43 1 5.4073 8.4380 6.0224 44 1 6.1547 4.9759 1.5604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867173756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:01 Heat of formation + Delta-G solvation = 27.204686 kcal Electronic energy + Delta-G solvation = -25873.051909 eV Core-core repulsion = 22179.197440 eV Total energy + Delta-G solvation = -3693.854469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.60601 -40.82829 -39.22264 -38.56153 -36.38538 -34.73265 -34.22807 -32.27948 -31.11523 -30.86373 -28.45654 -28.37422 -27.27052 -26.37888 -24.19439 -23.83088 -23.18654 -22.38736 -20.16381 -19.58027 -19.13090 -18.77074 -18.26033 -16.78303 -16.69375 -16.46965 -16.13357 -15.83851 -15.71455 -15.43688 -15.19116 -15.12478 -14.57192 -14.38090 -14.14547 -13.92314 -13.56598 -13.31421 -13.09006 -12.99038 -12.97453 -12.84274 -12.74497 -12.54664 -12.44643 -12.25946 -12.19288 -12.17260 -12.15488 -12.11854 -11.60850 -11.54790 -11.25399 -10.87708 -10.81426 -9.74950 -9.02927 -8.47872 -6.16530 0.06749 0.45908 0.71298 1.23018 1.33895 1.43036 1.51308 1.86893 2.16470 2.56535 2.81821 2.98286 3.16671 3.41215 3.68757 3.79333 3.86397 3.87281 4.09250 4.18191 4.30411 4.35252 4.38545 4.47429 4.53042 4.55696 4.62722 4.69397 4.70170 4.74227 4.82742 4.84861 4.93408 5.02331 5.02589 5.04136 5.11021 5.14729 5.15757 5.26803 5.32555 5.47624 5.61730 5.68421 5.71453 6.01074 6.17976 6.96644 7.16479 7.77467 8.75302 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003255 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.797261 B = 8600.499247 C = 9866.232090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C 0.024 3.976 4 C -0.138 4.138 5 C -0.133 4.133 6 C 0.172 3.828 7 N -0.401 5.401 8 O 0.074 5.926 9 C 0.198 3.802 10 C 0.024 3.976 11 C -0.051 4.051 12 C -0.174 4.174 13 C -0.073 4.073 14 C -0.240 4.240 15 C 0.110 3.890 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.254 1.254 25 C -0.182 4.182 26 N -0.501 5.501 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -15.056 -12.458 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C 0.022 3.978 4 C -0.196 4.196 5 C -0.191 4.191 6 C -0.101 4.101 7 N -0.110 5.110 8 O 0.017 5.983 9 C -0.022 4.022 10 C -0.014 4.014 11 C -0.052 4.052 12 C -0.192 4.192 13 C -0.091 4.091 14 C -0.259 4.259 15 C 0.060 3.940 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.201 4.201 26 N -0.234 5.234 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.176 0.824 41 H 0.166 0.834 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.615 -15.200 -12.508 20.218 hybrid contribution 0.382 0.700 1.178 1.422 sum -4.233 -14.500 -11.330 18.882 Atomic orbital electron populations 1.21888 0.92859 1.02898 1.03113 1.21459 0.98016 0.92666 1.02070 1.19206 0.81191 0.98688 0.98687 1.21901 1.03027 0.99665 0.95018 1.21868 1.02925 0.99801 0.94462 1.26311 1.00973 0.83215 0.99608 1.74552 0.89617 1.24240 1.22616 1.85239 1.22144 1.24984 1.65903 1.29104 0.97165 0.81965 0.93962 1.19324 0.88277 0.99545 0.94273 1.19239 0.97436 0.93598 0.94911 1.21124 1.01745 1.01097 0.95256 1.21181 0.97853 0.95156 0.94916 1.21380 1.04201 0.98488 1.01859 1.19887 0.93617 0.87301 0.93243 1.83947 1.68759 1.36211 1.25025 1.21812 1.30745 1.13182 0.83292 0.88126 1.26583 0.95621 0.94465 1.05349 1.70187 1.32216 1.14317 1.39070 0.84606 0.78397 0.79548 0.73786 1.18611 1.19643 1.17745 1.20272 1.05839 1.00931 0.93104 1.71898 1.00528 1.30019 1.20962 0.91776 0.90886 0.91464 0.91749 0.92932 0.88252 0.93288 0.94027 0.92714 0.92402 0.88525 0.82609 0.85361 0.82352 0.83385 0.86400 0.91854 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.21 71.98 0.66 -1.41 16 2 C -0.10 -2.06 4.49 30.60 0.14 -1.92 16 3 C 0.02 0.56 0.77 -52.93 -0.04 0.52 16 4 C -0.14 -3.35 8.10 71.98 0.58 -2.77 16 5 C -0.13 -2.56 8.10 71.98 0.58 -1.97 16 6 C 0.17 5.10 6.40 138.46 0.89 5.99 16 7 N -0.40 -12.06 11.47 -60.30 -0.69 -12.75 16 8 O 0.07 2.08 11.31 74.87 0.85 2.92 16 9 C 0.20 5.49 7.75 88.38 0.68 6.17 16 10 C 0.02 0.53 5.97 29.10 0.17 0.70 16 11 C -0.05 -1.57 5.11 -19.88 -0.10 -1.67 16 12 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 13 C -0.07 -2.38 10.04 22.25 0.22 -2.15 16 14 C -0.24 -10.28 9.17 22.39 0.21 -10.08 16 15 C 0.11 5.45 6.65 22.58 0.15 5.60 16 16 O -0.23 -14.12 9.76 -22.77 -0.22 -14.34 16 17 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 18 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.30 5.49 84.84 0.47 -0.83 16 20 N -0.92 -56.90 13.67 21.61 0.30 -56.61 16 21 Si 1.02 43.07 29.55 68.60 2.03 45.09 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 25 C -0.18 -7.64 9.64 22.39 0.22 -7.42 16 26 N -0.50 -15.98 11.55 -303.19 -3.50 -19.48 16 27 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 28 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.79 6.43 -2.39 -0.02 1.77 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.35 6.43 -2.38 -0.02 1.33 16 38 H 0.16 1.99 8.08 -2.39 -0.02 1.97 16 39 H 0.13 2.61 8.08 -2.39 -0.02 2.59 16 40 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.15 3.70 8.06 -2.92 -0.02 3.67 16 42 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -75.75 366.92 5.46 -70.29 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 1.01 Total: 24.45 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 5.69 Total: -39.58 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -3.90 Total: -88.84 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.62 Total: -11.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -75.75 5.46 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867173756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.499 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds