Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 C 1.53002 * 109.47301 * 120.00663 * 2 1 3 5 5 H 1.08996 * 109.46544 * 299.98492 * 4 2 1 6 6 C 1.50701 * 109.46994 * 179.97438 * 4 2 1 7 7 O 1.21273 * 120.00252 * 260.96246 * 6 4 2 8 8 N 1.34775 * 119.99545 * 80.96653 * 6 4 2 9 9 C 1.46501 * 119.99832 * 184.26769 * 8 6 4 10 10 C 1.50704 * 109.47555 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99285 * 359.97438 * 10 9 8 12 12 C 1.37866 * 120.00309 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47279 * 90.00127 * 14 12 10 16 16 H 1.48511 * 109.47081 * 210.00059 * 14 12 10 17 17 H 1.48496 * 109.47265 * 329.99755 * 14 12 10 18 18 N 1.46501 * 109.47157 * 59.98565 * 4 2 1 19 19 C 1.46724 * 125.62630 * 234.68696 * 18 4 2 20 20 C 1.50825 * 106.25481 * 180.02562 * 19 18 4 21 21 C 1.37580 * 133.23993 * 179.97438 * 20 19 18 22 22 C 1.38474 * 119.95291 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.18843 * 0.02562 * 22 21 20 24 24 C 1.37939 * 120.32423 * 359.97438 * 23 22 21 25 25 C 1.39626 * 119.82425 * 0.02562 * 24 23 22 26 26 C 1.34420 * 125.62167 * 54.66439 * 18 4 2 27 27 O 1.21558 * 124.85631 * 359.97438 * 26 18 4 28 28 H 1.09004 * 109.46296 * 294.94539 * 1 2 3 29 29 H 1.09001 * 109.47301 * 54.94171 * 1 2 3 30 30 H 1.08998 * 109.47361 * 174.94807 * 1 2 3 31 31 H 1.09001 * 109.46675 * 240.00477 * 2 1 3 32 32 H 1.09000 * 109.46862 * 184.93542 * 3 2 1 33 33 H 1.09001 * 109.46974 * 304.93656 * 3 2 1 34 34 H 1.09001 * 109.46517 * 64.93334 * 3 2 1 35 35 H 0.96997 * 120.00410 * 4.26407 * 8 6 4 36 36 H 1.09000 * 109.46880 * 300.00093 * 9 8 6 37 37 H 1.09007 * 109.47152 * 60.00074 * 9 8 6 38 38 H 0.97004 * 119.99913 * 180.02562 * 13 12 10 39 39 H 1.08998 * 110.12331 * 60.80057 * 19 18 4 40 40 H 1.09000 * 110.07265 * 299.19859 * 19 18 4 41 41 H 1.07999 * 120.02258 * 359.97438 * 21 20 19 42 42 H 1.08004 * 119.90308 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.83511 * 180.02562 * 23 22 21 44 44 H 1.08002 * 120.08770 * 179.72646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6770 -0.2075 2.1391 6 6 3.5471 -0.7219 1.2488 7 8 4.1531 -1.7028 0.8729 8 7 4.2214 0.3678 1.6662 9 6 5.6833 0.4028 1.5783 10 6 6.1869 1.7220 2.1050 11 1 5.4877 2.4606 2.4684 12 6 7.5399 1.9859 2.1229 13 7 8.3912 1.0866 1.6799 14 14 8.1641 3.6208 2.7763 15 1 8.4194 3.5060 4.2346 16 1 9.4248 3.9834 2.0801 17 1 7.1445 4.6727 2.5336 18 7 1.5515 -2.1025 1.2492 19 6 0.7970 -2.7422 2.3329 20 6 0.5200 -4.1534 1.8786 21 6 -0.1360 -5.2172 2.4541 22 6 -0.2307 -6.4203 1.7751 23 6 0.3332 -6.5565 0.5187 24 6 0.9930 -5.4963 -0.0673 25 6 1.0927 -4.2800 0.6111 26 6 1.7201 -2.9927 0.2562 27 8 2.3058 -2.7690 -0.7853 28 1 -0.3632 0.4335 0.9319 29 1 -0.3634 0.5903 -0.8412 30 1 -0.3634 -1.0236 -0.0905 31 1 1.8933 -0.5138 -0.8901 32 1 3.1265 1.4437 -0.0884 33 1 1.6064 1.9812 -0.8425 34 1 1.7507 1.9301 0.9309 35 1 3.7387 1.1290 2.0248 36 1 6.1025 -0.4096 2.1719 37 1 5.9877 0.2874 0.5380 38 1 9.3433 1.2722 1.6928 39 1 -0.1403 -2.2118 2.5011 40 1 1.3911 -2.7528 3.2467 41 1 -0.5766 -5.1139 3.4346 42 1 -0.7454 -7.2549 2.2277 43 1 0.2555 -7.4973 -0.0060 44 1 1.4355 -5.6082 -1.0461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907803753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = -33.652344 kcal Electronic energy + Delta-G solvation = -26719.652994 eV Core-core repulsion = 23023.159566 eV Total energy + Delta-G solvation = -3696.493428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29574 -39.25789 -37.76946 -36.14809 -35.20282 -34.15234 -32.26913 -31.30321 -31.12637 -28.27404 -27.00750 -26.78780 -26.40278 -23.40520 -22.44621 -21.90524 -20.68455 -20.21764 -19.24300 -17.52607 -16.95078 -16.36959 -16.23924 -15.99839 -15.40792 -15.02943 -14.75198 -14.52736 -14.33849 -14.29934 -13.77026 -13.38488 -13.31819 -13.17681 -13.12193 -12.72789 -12.56721 -12.40334 -12.12809 -12.03401 -11.97066 -11.77322 -11.26987 -11.10283 -10.99028 -10.97061 -10.82742 -10.75690 -10.30858 -9.56677 -9.43145 -9.38316 -9.16172 -8.99432 -8.71624 -8.39751 -7.84107 -6.15163 -4.22439 0.69518 1.09344 2.67519 2.92396 3.24371 3.30364 3.32628 3.34685 3.75644 3.94876 4.14034 4.34283 4.40778 4.68331 4.75348 4.84591 4.92374 5.05908 5.13135 5.17438 5.20621 5.20908 5.25825 5.30669 5.50024 5.57808 5.62425 5.72218 5.73696 5.85214 5.93917 6.05433 6.08284 6.12099 6.18324 6.37750 6.44890 6.61268 6.63829 7.15282 7.33036 7.44792 7.54218 7.66982 7.98299 8.37508 8.62640 8.79623 9.11113 9.44136 10.94959 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.003221 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.791747 B = 8691.813087 C = 9274.114673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.155 4.155 4 C 0.157 3.843 5 H 0.106 0.894 6 C 0.486 3.514 7 O -0.528 6.528 8 N -0.710 5.710 9 C 0.252 3.748 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.601 5.601 19 C 0.143 3.857 20 C -0.084 4.084 21 C -0.104 4.104 22 C -0.095 4.095 23 C -0.129 4.129 24 C -0.049 4.049 25 C -0.146 4.146 26 C 0.565 3.435 27 O -0.498 6.498 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.389 0.611 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.559 -8.977 2.213 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.213 4.213 4 C 0.051 3.949 5 H 0.124 0.876 6 C 0.268 3.732 7 O -0.404 6.404 8 N -0.361 5.361 9 C 0.131 3.869 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.335 5.335 19 C 0.020 3.980 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.068 4.068 25 C -0.149 4.149 26 C 0.353 3.647 27 O -0.372 6.372 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.222 0.778 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.508 -9.476 1.325 23.540 hybrid contribution 0.318 1.146 0.696 1.378 sum -21.190 -8.330 2.022 22.858 Atomic orbital electron populations 1.21756 0.94474 1.01545 1.01688 1.21407 0.96203 0.96783 0.98121 1.21984 1.03179 0.94157 1.02010 1.21008 0.92944 0.80165 1.00750 0.87611 1.20602 0.89042 0.84279 0.79301 1.90721 1.69527 1.33441 1.46728 1.46515 1.10534 1.16647 1.62365 1.19090 0.72863 0.97303 0.97643 1.21203 0.92391 1.00839 1.43604 0.91905 1.24954 0.96620 0.97366 0.95087 1.69985 1.02712 1.34257 1.45241 0.86424 0.78429 0.83199 0.78905 1.20506 1.21024 1.19726 1.47467 1.56056 1.11452 1.18479 1.20452 0.96951 0.89342 0.91215 1.20479 0.97412 0.95361 0.95248 1.20274 0.99941 0.91709 1.00301 1.21277 0.98297 0.97043 0.94687 1.21116 0.98865 0.98754 0.95917 1.20902 0.95700 0.90561 0.99668 1.20568 1.02062 0.95619 0.96646 1.18039 0.79253 0.83788 0.83662 1.90773 1.40448 1.80700 1.25272 0.92721 0.92297 0.93011 0.88724 0.90672 0.91983 0.92390 0.77750 0.95653 0.95585 0.92458 0.88770 0.88836 0.85240 0.85174 0.85162 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.96 37.16 0.33 -1.17 16 2 C -0.11 -1.50 2.30 -90.62 -0.21 -1.71 16 3 C -0.16 -2.05 8.11 37.16 0.30 -1.75 16 4 C 0.16 2.39 2.32 -69.08 -0.16 2.23 16 5 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 6 C 0.49 10.11 6.48 -10.99 -0.07 10.04 16 7 O -0.53 -13.71 14.73 -11.41 -0.17 -13.88 16 8 N -0.71 -14.97 4.20 -61.47 -0.26 -15.23 16 9 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 10 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.88 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 N -0.60 -9.00 2.07 -169.87 -0.35 -9.35 16 19 C 0.14 1.52 7.36 -5.01 -0.04 1.49 16 20 C -0.08 -0.94 6.38 -104.27 -0.66 -1.60 16 21 C -0.10 -0.88 10.03 -39.73 -0.40 -1.28 16 22 C -0.09 -0.74 10.05 -39.44 -0.40 -1.14 16 23 C -0.13 -1.16 10.02 -39.64 -0.40 -1.55 16 24 C -0.05 -0.60 10.10 -39.17 -0.40 -0.99 16 25 C -0.15 -2.08 6.26 -105.05 -0.66 -2.73 16 26 C 0.56 10.02 6.68 -12.63 -0.08 9.93 16 27 O -0.50 -10.88 15.16 -11.66 -0.18 -11.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.60 7.72 -51.93 -0.40 0.20 16 31 H 0.09 1.69 6.57 -51.93 -0.34 1.35 16 32 H 0.07 1.23 6.45 -51.93 -0.33 0.89 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.39 6.91 7.58 -40.82 -0.31 6.60 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -36.62 365.21 -9.43 -46.06 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.41 Total: 4.57 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -3.28 Total: 3.16 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.13 Total: -50.21 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.34 Total: -24.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.62 -9.43 -46.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.403 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds