Wall clock time and date at job start Tue Mar 31 2020 11:45:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47405 * 2 1
4 4 C 1.53002 * 109.47301 * 120.00663 * 2 1 3
5 5 H 1.08996 * 109.46544 * 299.98492 * 4 2 1
6 6 C 1.50701 * 109.46994 * 179.97438 * 4 2 1
7 7 O 1.21273 * 120.00252 * 260.96246 * 6 4 2
8 8 N 1.34775 * 119.99545 * 80.96653 * 6 4 2
9 9 C 1.46501 * 119.99832 * 184.26769 * 8 6 4
10 10 C 1.50704 * 109.47555 * 179.97438 * 9 8 6
11 11 H 1.08002 * 119.99285 * 359.97438 * 10 9 8
12 12 C 1.37866 * 120.00309 * 179.97438 * 10 9 8
13 13 N 1.31520 * 119.99939 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00072 * 180.02562 * 12 10 9
15 15 H 1.48492 * 109.47279 * 90.00127 * 14 12 10
16 16 H 1.48511 * 109.47081 * 210.00059 * 14 12 10
17 17 H 1.48496 * 109.47265 * 329.99755 * 14 12 10
18 18 N 1.46501 * 109.47157 * 59.98565 * 4 2 1
19 19 C 1.46724 * 125.62630 * 234.68696 * 18 4 2
20 20 C 1.50825 * 106.25481 * 180.02562 * 19 18 4
21 21 C 1.37580 * 133.23993 * 179.97438 * 20 19 18
22 22 C 1.38474 * 119.95291 * 179.97438 * 21 20 19
23 23 C 1.38385 * 120.18843 * 0.02562 * 22 21 20
24 24 C 1.37939 * 120.32423 * 359.97438 * 23 22 21
25 25 C 1.39626 * 119.82425 * 0.02562 * 24 23 22
26 26 C 1.34420 * 125.62167 * 54.66439 * 18 4 2
27 27 O 1.21558 * 124.85631 * 359.97438 * 26 18 4
28 28 H 1.09004 * 109.46296 * 294.94539 * 1 2 3
29 29 H 1.09001 * 109.47301 * 54.94171 * 1 2 3
30 30 H 1.08998 * 109.47361 * 174.94807 * 1 2 3
31 31 H 1.09001 * 109.46675 * 240.00477 * 2 1 3
32 32 H 1.09000 * 109.46862 * 184.93542 * 3 2 1
33 33 H 1.09001 * 109.46974 * 304.93656 * 3 2 1
34 34 H 1.09001 * 109.46517 * 64.93334 * 3 2 1
35 35 H 0.96997 * 120.00410 * 4.26407 * 8 6 4
36 36 H 1.09000 * 109.46880 * 300.00093 * 9 8 6
37 37 H 1.09007 * 109.47152 * 60.00074 * 9 8 6
38 38 H 0.97004 * 119.99913 * 180.02562 * 13 12 10
39 39 H 1.08998 * 110.12331 * 60.80057 * 19 18 4
40 40 H 1.09000 * 110.07265 * 299.19859 * 19 18 4
41 41 H 1.07999 * 120.02258 * 359.97438 * 21 20 19
42 42 H 1.08004 * 119.90308 * 179.97438 * 22 21 20
43 43 H 1.07997 * 119.83511 * 180.02562 * 23 22 21
44 44 H 1.08002 * 120.08770 * 179.72646 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7214 1.2492
5 1 1.6770 -0.2075 2.1391
6 6 3.5471 -0.7219 1.2488
7 8 4.1531 -1.7028 0.8729
8 7 4.2214 0.3678 1.6662
9 6 5.6833 0.4028 1.5783
10 6 6.1869 1.7220 2.1050
11 1 5.4877 2.4606 2.4684
12 6 7.5399 1.9859 2.1229
13 7 8.3912 1.0866 1.6799
14 14 8.1641 3.6208 2.7763
15 1 8.4194 3.5060 4.2346
16 1 9.4248 3.9834 2.0801
17 1 7.1445 4.6727 2.5336
18 7 1.5515 -2.1025 1.2492
19 6 0.7970 -2.7422 2.3329
20 6 0.5200 -4.1534 1.8786
21 6 -0.1360 -5.2172 2.4541
22 6 -0.2307 -6.4203 1.7751
23 6 0.3332 -6.5565 0.5187
24 6 0.9930 -5.4963 -0.0673
25 6 1.0927 -4.2800 0.6111
26 6 1.7201 -2.9927 0.2562
27 8 2.3058 -2.7690 -0.7853
28 1 -0.3632 0.4335 0.9319
29 1 -0.3634 0.5903 -0.8412
30 1 -0.3634 -1.0236 -0.0905
31 1 1.8933 -0.5138 -0.8901
32 1 3.1265 1.4437 -0.0884
33 1 1.6064 1.9812 -0.8425
34 1 1.7507 1.9301 0.9309
35 1 3.7387 1.1290 2.0248
36 1 6.1025 -0.4096 2.1719
37 1 5.9877 0.2874 0.5380
38 1 9.3433 1.2722 1.6928
39 1 -0.1403 -2.2118 2.5011
40 1 1.3911 -2.7528 3.2467
41 1 -0.5766 -5.1139 3.4346
42 1 -0.7454 -7.2549 2.2277
43 1 0.2555 -7.4973 -0.0060
44 1 1.4355 -5.6082 -1.0461
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000907803753.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:45:01
Heat of formation + Delta-G solvation = -33.652344 kcal
Electronic energy + Delta-G solvation = -26719.652994 eV
Core-core repulsion = 23023.159566 eV
Total energy + Delta-G solvation = -3696.493428 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.29574 -39.25789 -37.76946 -36.14809 -35.20282 -34.15234 -32.26913 -31.30321
-31.12637 -28.27404 -27.00750 -26.78780 -26.40278 -23.40520 -22.44621 -21.90524
-20.68455 -20.21764 -19.24300 -17.52607 -16.95078 -16.36959 -16.23924 -15.99839
-15.40792 -15.02943 -14.75198 -14.52736 -14.33849 -14.29934 -13.77026 -13.38488
-13.31819 -13.17681 -13.12193 -12.72789 -12.56721 -12.40334 -12.12809 -12.03401
-11.97066 -11.77322 -11.26987 -11.10283 -10.99028 -10.97061 -10.82742 -10.75690
-10.30858 -9.56677 -9.43145 -9.38316 -9.16172 -8.99432 -8.71624 -8.39751
-7.84107 -6.15163 -4.22439 0.69518 1.09344 2.67519 2.92396 3.24371
3.30364 3.32628 3.34685 3.75644 3.94876 4.14034 4.34283 4.40778
4.68331 4.75348 4.84591 4.92374 5.05908 5.13135 5.17438 5.20621
5.20908 5.25825 5.30669 5.50024 5.57808 5.62425 5.72218 5.73696
5.85214 5.93917 6.05433 6.08284 6.12099 6.18324 6.37750 6.44890
6.61268 6.63829 7.15282 7.33036 7.44792 7.54218 7.66982 7.98299
8.37508 8.62640 8.79623 9.11113 9.44136 10.94959
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.020041 B = 0.003221 C = 0.003018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1396.791747 B = 8691.813087 C = 9274.114673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.106 4.106
3 C -0.155 4.155
4 C 0.157 3.843
5 H 0.106 0.894
6 C 0.486 3.514
7 O -0.528 6.528
8 N -0.710 5.710
9 C 0.252 3.748
10 C -0.542 4.542
11 H 0.063 0.937
12 C 0.063 3.937
13 N -0.885 5.885
14 Si 0.903 3.097
15 H -0.279 1.279
16 H -0.285 1.285
17 H -0.272 1.272
18 N -0.601 5.601
19 C 0.143 3.857
20 C -0.084 4.084
21 C -0.104 4.104
22 C -0.095 4.095
23 C -0.129 4.129
24 C -0.049 4.049
25 C -0.146 4.146
26 C 0.565 3.435
27 O -0.498 6.498
28 H 0.054 0.946
29 H 0.058 0.942
30 H 0.051 0.949
31 H 0.094 0.906
32 H 0.074 0.926
33 H 0.061 0.939
34 H 0.057 0.943
35 H 0.389 0.611
36 H 0.025 0.975
37 H 0.026 0.974
38 H 0.266 0.734
39 H 0.094 0.906
40 H 0.094 0.906
41 H 0.130 0.870
42 H 0.130 0.870
43 H 0.130 0.870
44 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.559 -8.977 2.213 24.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.125 4.125
3 C -0.213 4.213
4 C 0.051 3.949
5 H 0.124 0.876
6 C 0.268 3.732
7 O -0.404 6.404
8 N -0.361 5.361
9 C 0.131 3.869
10 C -0.580 4.580
11 H 0.081 0.919
12 C -0.140 4.140
13 N -0.522 5.522
14 Si 0.730 3.270
15 H -0.205 1.205
16 H -0.210 1.210
17 H -0.197 1.197
18 N -0.335 5.335
19 C 0.020 3.980
20 C -0.085 4.085
21 C -0.122 4.122
22 C -0.113 4.113
23 C -0.147 4.147
24 C -0.068 4.068
25 C -0.149 4.149
26 C 0.353 3.647
27 O -0.372 6.372
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.070 0.930
31 H 0.113 0.887
32 H 0.093 0.907
33 H 0.080 0.920
34 H 0.076 0.924
35 H 0.222 0.778
36 H 0.043 0.957
37 H 0.044 0.956
38 H 0.075 0.925
39 H 0.112 0.888
40 H 0.112 0.888
41 H 0.148 0.852
42 H 0.148 0.852
43 H 0.148 0.852
44 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -21.508 -9.476 1.325 23.540
hybrid contribution 0.318 1.146 0.696 1.378
sum -21.190 -8.330 2.022 22.858
Atomic orbital electron populations
1.21756 0.94474 1.01545 1.01688 1.21407 0.96203 0.96783 0.98121
1.21984 1.03179 0.94157 1.02010 1.21008 0.92944 0.80165 1.00750
0.87611 1.20602 0.89042 0.84279 0.79301 1.90721 1.69527 1.33441
1.46728 1.46515 1.10534 1.16647 1.62365 1.19090 0.72863 0.97303
0.97643 1.21203 0.92391 1.00839 1.43604 0.91905 1.24954 0.96620
0.97366 0.95087 1.69985 1.02712 1.34257 1.45241 0.86424 0.78429
0.83199 0.78905 1.20506 1.21024 1.19726 1.47467 1.56056 1.11452
1.18479 1.20452 0.96951 0.89342 0.91215 1.20479 0.97412 0.95361
0.95248 1.20274 0.99941 0.91709 1.00301 1.21277 0.98297 0.97043
0.94687 1.21116 0.98865 0.98754 0.95917 1.20902 0.95700 0.90561
0.99668 1.20568 1.02062 0.95619 0.96646 1.18039 0.79253 0.83788
0.83662 1.90773 1.40448 1.80700 1.25272 0.92721 0.92297 0.93011
0.88724 0.90672 0.91983 0.92390 0.77750 0.95653 0.95585 0.92458
0.88770 0.88836 0.85240 0.85174 0.85162 0.85060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 8.96 37.16 0.33 -1.17 16
2 C -0.11 -1.50 2.30 -90.62 -0.21 -1.71 16
3 C -0.16 -2.05 8.11 37.16 0.30 -1.75 16
4 C 0.16 2.39 2.32 -69.08 -0.16 2.23 16
5 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16
6 C 0.49 10.11 6.48 -10.99 -0.07 10.04 16
7 O -0.53 -13.71 14.73 -11.41 -0.17 -13.88 16
8 N -0.71 -14.97 4.20 -61.47 -0.26 -15.23 16
9 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16
10 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16
11 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16
12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
13 N -0.88 -26.37 13.29 55.43 0.74 -25.63 16
14 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16
15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
18 N -0.60 -9.00 2.07 -169.87 -0.35 -9.35 16
19 C 0.14 1.52 7.36 -5.01 -0.04 1.49 16
20 C -0.08 -0.94 6.38 -104.27 -0.66 -1.60 16
21 C -0.10 -0.88 10.03 -39.73 -0.40 -1.28 16
22 C -0.09 -0.74 10.05 -39.44 -0.40 -1.14 16
23 C -0.13 -1.16 10.02 -39.64 -0.40 -1.55 16
24 C -0.05 -0.60 10.10 -39.17 -0.40 -0.99 16
25 C -0.15 -2.08 6.26 -105.05 -0.66 -2.73 16
26 C 0.56 10.02 6.68 -12.63 -0.08 9.93 16
27 O -0.50 -10.88 15.16 -11.66 -0.18 -11.06 16
28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.05 0.60 7.72 -51.93 -0.40 0.20 16
31 H 0.09 1.69 6.57 -51.93 -0.34 1.35 16
32 H 0.07 1.23 6.45 -51.93 -0.33 0.89 16
33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.39 6.91 7.58 -40.82 -0.31 6.60 16
36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16
42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16
43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16
44 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16
LS Contribution 365.21 15.07 5.50 5.50
Total: -1.00 -36.62 365.21 -9.43 -46.06
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: -6.41 Total: 4.57 kcal
Atomic # 6 Polarization: 6.44 SS G_CDS: -3.28 Total: 3.16 kcal
Atomic # 7 Polarization: -50.34 SS G_CDS: 0.13 Total: -50.21 kcal
Atomic # 8 Polarization: -24.59 SS G_CDS: -0.34 Total: -24.94 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -36.62 -9.43 -46.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000907803753.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.403 kcal
(2) G-P(sol) polarization free energy of solvation -36.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds