Wall clock time and date at job start Tue Mar 31 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 C 1.53002 * 109.47301 * 120.00663 * 2 1 3 5 5 H 1.08996 * 109.46544 * 299.98492 * 4 2 1 6 6 C 1.50701 * 109.46994 * 179.97438 * 4 2 1 7 7 O 1.21273 * 120.00252 * 260.96246 * 6 4 2 8 8 N 1.34775 * 119.99545 * 80.96653 * 6 4 2 9 9 C 1.46501 * 119.99832 * 184.26769 * 8 6 4 10 10 C 1.50704 * 109.47555 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99285 * 359.97438 * 10 9 8 12 12 C 1.37866 * 120.00309 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47279 * 90.00127 * 14 12 10 16 16 H 1.48511 * 109.47081 * 210.00059 * 14 12 10 17 17 H 1.48496 * 109.47265 * 329.99755 * 14 12 10 18 18 N 1.46501 * 109.47157 * 59.98565 * 4 2 1 19 19 C 1.46724 * 125.62630 * 234.68696 * 18 4 2 20 20 C 1.50825 * 106.25481 * 180.02562 * 19 18 4 21 21 C 1.37580 * 133.23993 * 179.97438 * 20 19 18 22 22 C 1.38474 * 119.95291 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.18843 * 0.02562 * 22 21 20 24 24 C 1.37939 * 120.32423 * 359.97438 * 23 22 21 25 25 C 1.39626 * 119.82425 * 0.02562 * 24 23 22 26 26 C 1.34420 * 125.62167 * 54.66439 * 18 4 2 27 27 O 1.21558 * 124.85631 * 359.97438 * 26 18 4 28 28 H 1.09004 * 109.46296 * 294.94539 * 1 2 3 29 29 H 1.09001 * 109.47301 * 54.94171 * 1 2 3 30 30 H 1.08998 * 109.47361 * 174.94807 * 1 2 3 31 31 H 1.09001 * 109.46675 * 240.00477 * 2 1 3 32 32 H 1.09000 * 109.46862 * 184.93542 * 3 2 1 33 33 H 1.09001 * 109.46974 * 304.93656 * 3 2 1 34 34 H 1.09001 * 109.46517 * 64.93334 * 3 2 1 35 35 H 0.96997 * 120.00410 * 4.26407 * 8 6 4 36 36 H 1.09000 * 109.46880 * 300.00093 * 9 8 6 37 37 H 1.09007 * 109.47152 * 60.00074 * 9 8 6 38 38 H 0.97004 * 119.99913 * 180.02562 * 13 12 10 39 39 H 1.08998 * 110.12331 * 60.80057 * 19 18 4 40 40 H 1.09000 * 110.07265 * 299.19859 * 19 18 4 41 41 H 1.07999 * 120.02258 * 359.97438 * 21 20 19 42 42 H 1.08004 * 119.90308 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.83511 * 180.02562 * 23 22 21 44 44 H 1.08002 * 120.08770 * 179.72646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6770 -0.2075 2.1391 6 6 3.5471 -0.7219 1.2488 7 8 4.1531 -1.7028 0.8729 8 7 4.2214 0.3678 1.6662 9 6 5.6833 0.4028 1.5783 10 6 6.1869 1.7220 2.1050 11 1 5.4877 2.4606 2.4684 12 6 7.5399 1.9859 2.1229 13 7 8.3912 1.0866 1.6799 14 14 8.1641 3.6208 2.7763 15 1 8.4194 3.5060 4.2346 16 1 9.4248 3.9834 2.0801 17 1 7.1445 4.6727 2.5336 18 7 1.5515 -2.1025 1.2492 19 6 0.7970 -2.7422 2.3329 20 6 0.5200 -4.1534 1.8786 21 6 -0.1360 -5.2172 2.4541 22 6 -0.2307 -6.4203 1.7751 23 6 0.3332 -6.5565 0.5187 24 6 0.9930 -5.4963 -0.0673 25 6 1.0927 -4.2800 0.6111 26 6 1.7201 -2.9927 0.2562 27 8 2.3058 -2.7690 -0.7853 28 1 -0.3632 0.4335 0.9319 29 1 -0.3634 0.5903 -0.8412 30 1 -0.3634 -1.0236 -0.0905 31 1 1.8933 -0.5138 -0.8901 32 1 3.1265 1.4437 -0.0884 33 1 1.6064 1.9812 -0.8425 34 1 1.7507 1.9301 0.9309 35 1 3.7387 1.1290 2.0248 36 1 6.1025 -0.4096 2.1719 37 1 5.9877 0.2874 0.5380 38 1 9.3433 1.2722 1.6928 39 1 -0.1403 -2.2118 2.5011 40 1 1.3911 -2.7528 3.2467 41 1 -0.5766 -5.1139 3.4346 42 1 -0.7454 -7.2549 2.2277 43 1 0.2555 -7.4973 -0.0060 44 1 1.4355 -5.6082 -1.0461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907803753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:00 Heat of formation + Delta-G solvation = -58.193893 kcal Electronic energy + Delta-G solvation = -26720.717195 eV Core-core repulsion = 23023.159566 eV Total energy + Delta-G solvation = -3697.557629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.39652 -40.67673 -38.98379 -37.47704 -36.40679 -36.04633 -34.31293 -32.20375 -31.99381 -29.95664 -28.15506 -27.95220 -27.59282 -24.97145 -23.85554 -22.75346 -21.90216 -21.65704 -20.61759 -19.12835 -18.14082 -17.82989 -17.46426 -17.12320 -16.78284 -16.63792 -16.21679 -16.03297 -15.53393 -15.31119 -14.90160 -14.79868 -14.50805 -14.36200 -14.15839 -14.05418 -14.02413 -13.67881 -13.60887 -13.34058 -13.00749 -12.93035 -12.76146 -12.72743 -12.24998 -12.23431 -12.07014 -12.05833 -11.82491 -11.50862 -11.03996 -10.81388 -10.75702 -10.08929 -9.88169 -9.84456 -9.59526 -8.30149 -6.47854 -0.17626 0.34980 1.41855 1.45235 1.49279 1.56636 1.72823 1.89415 2.32525 2.56000 2.85994 3.04683 3.14596 3.41764 3.70837 3.76751 3.85941 3.93646 4.15424 4.18330 4.26778 4.34525 4.45674 4.50313 4.54792 4.59640 4.78270 4.78705 4.90347 4.94082 5.00455 5.06363 5.15693 5.17710 5.19511 5.35194 5.37495 5.38828 5.45452 5.46051 5.57261 5.68031 5.81753 5.91702 6.00734 6.62942 6.83708 7.14727 7.21950 7.45439 8.82370 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.003221 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.791747 B = 8691.813087 C = 9274.114673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.152 4.152 4 C 0.166 3.834 5 H 0.160 0.840 6 C 0.479 3.521 7 O -0.589 6.589 8 N -0.697 5.697 9 C 0.271 3.729 10 C -0.551 4.551 11 H 0.090 0.910 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.988 3.012 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.251 1.251 18 N -0.602 5.602 19 C 0.137 3.863 20 C -0.082 4.082 21 C -0.097 4.097 22 C -0.080 4.080 23 C -0.127 4.127 24 C -0.073 4.073 25 C -0.193 4.193 26 C 0.546 3.454 27 O -0.566 6.566 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.410 0.590 36 H -0.018 1.018 37 H -0.023 1.023 38 H 0.268 0.732 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.566 -7.817 5.866 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.122 4.122 3 C -0.210 4.210 4 C 0.060 3.940 5 H 0.177 0.823 6 C 0.265 3.735 7 O -0.469 6.469 8 N -0.349 5.349 9 C 0.148 3.852 10 C -0.589 4.589 11 H 0.108 0.892 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.811 3.189 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.175 1.175 18 N -0.333 5.333 19 C 0.016 3.984 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.098 4.098 23 C -0.145 4.145 24 C -0.092 4.092 25 C -0.196 4.196 26 C 0.337 3.663 27 O -0.446 6.446 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.247 0.753 36 H 0.000 1.000 37 H -0.005 1.005 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.188 0.812 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.602 -8.294 5.034 27.378 hybrid contribution 1.536 0.623 -0.466 1.722 sum -24.066 -7.671 4.568 25.668 Atomic orbital electron populations 1.21677 0.91041 1.01510 1.04029 1.21360 0.98824 0.96565 0.95426 1.21965 1.00503 0.93905 1.04579 1.21091 0.87974 0.81465 1.03475 0.82302 1.21801 0.91851 0.82771 0.77103 1.90697 1.71529 1.35751 1.48899 1.46176 1.08273 1.17860 1.62574 1.18478 0.76320 0.96555 0.93864 1.21595 0.93213 1.00847 1.43213 0.89238 1.26146 0.96888 1.01840 0.95021 1.70174 1.03204 1.37146 1.46816 0.85110 0.77798 0.77789 0.78234 1.19397 1.21278 1.17464 1.47660 1.55490 1.11114 1.19078 1.20867 0.98414 0.89367 0.89734 1.20723 0.97339 0.96451 0.93785 1.20768 0.98476 0.90617 1.01602 1.21835 0.96405 0.98010 0.93544 1.21448 0.97758 0.98517 0.96772 1.21035 0.97182 0.91426 0.99602 1.20518 1.04926 0.94956 0.99219 1.18857 0.78554 0.85628 0.83300 1.90715 1.43667 1.82134 1.28046 0.89079 0.91378 0.94025 0.93816 0.94711 0.90542 0.88812 0.75296 0.99982 1.00524 0.92335 0.84207 0.87515 0.81211 0.81027 0.82559 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.96 71.98 0.64 -1.80 16 2 C -0.10 -2.90 2.30 -10.79 -0.02 -2.92 16 3 C -0.15 -3.86 8.11 71.98 0.58 -3.27 16 4 C 0.17 4.96 2.32 44.25 0.10 5.06 16 5 H 0.16 3.03 8.10 -2.39 -0.02 3.01 16 6 C 0.48 21.05 6.48 87.66 0.57 21.62 16 7 O -0.59 -33.46 14.73 13.23 0.19 -33.27 16 8 N -0.70 -30.50 4.20 -466.78 -1.96 -32.46 16 9 C 0.27 15.53 5.43 85.63 0.47 16.00 16 10 C -0.55 -30.33 9.28 25.60 0.24 -30.09 16 11 H 0.09 4.35 7.60 -2.91 -0.02 4.32 16 12 C 0.00 0.01 5.46 84.65 0.46 0.48 16 13 N -0.93 -58.17 13.29 21.44 0.28 -57.88 16 14 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 16 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 18 N -0.60 -18.06 2.07 -809.82 -1.68 -19.73 16 19 C 0.14 2.53 7.36 85.63 0.63 3.17 16 20 C -0.08 -1.67 6.38 -19.63 -0.13 -1.79 16 21 C -0.10 -1.22 10.03 22.17 0.22 -1.00 16 22 C -0.08 -0.92 10.05 22.36 0.22 -0.69 16 23 C -0.13 -2.08 10.02 22.23 0.22 -1.85 16 24 C -0.07 -1.89 10.10 22.53 0.23 -1.66 16 25 C -0.19 -5.75 6.26 -20.14 -0.13 -5.88 16 26 C 0.55 20.93 6.68 86.75 0.58 21.51 16 27 O -0.57 -27.88 15.16 12.33 0.19 -27.70 16 28 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.90 7.72 -2.39 -0.02 0.89 16 31 H 0.04 1.71 6.57 -2.39 -0.02 1.69 16 32 H 0.03 1.16 6.45 -2.39 -0.02 1.14 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 14.22 7.58 -92.71 -0.70 13.52 16 36 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H -0.02 -1.53 8.14 -2.38 -0.02 -1.55 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -93.64 365.21 4.26 -89.38 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.31 Total: 20.10 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 4.90 Total: 16.87 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.35 Total: -110.07 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: 0.38 Total: -60.96 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -93.64 4.26 -89.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.185 kcal (2) G-P(sol) polarization free energy of solvation -93.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds