Wall clock time and date at job start Tue Mar 31 2020 11:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47381 * 2.37084 * 3 2 1 5 5 H 1.09004 * 109.47223 * 55.00226 * 4 3 2 6 6 C 1.53005 * 109.47211 * 174.99923 * 4 3 2 7 7 O 1.42897 * 109.46745 * 55.00208 * 6 4 3 8 8 N 1.46498 * 109.47318 * 295.00007 * 4 3 2 9 9 C 1.34774 * 120.00250 * 155.00099 * 8 4 3 10 10 O 1.21585 * 120.00239 * 359.97438 * 9 8 4 11 11 N 1.34774 * 120.00101 * 180.02562 * 9 8 4 12 12 C 1.46506 * 120.00251 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 325.00368 * 12 11 9 14 14 C 1.52997 * 109.47289 * 205.00099 * 12 11 9 15 15 C 1.50699 * 109.47337 * 64.99998 * 14 12 11 16 16 H 1.08001 * 119.99707 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00057 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47158 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 119.99481 * 19 17 15 22 22 H 1.48500 * 109.47108 * 239.99908 * 19 17 15 23 23 C 1.50701 * 109.46956 * 84.99989 * 12 11 9 24 24 C 1.38230 * 119.99878 * 39.72605 * 23 12 11 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 12 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 H 4.44642 * 5.63192 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47212 * 242.37033 * 3 2 1 31 31 H 1.09004 * 109.46830 * 122.37218 * 3 2 1 32 32 H 1.08998 * 109.47137 * 175.00109 * 6 4 3 33 33 H 1.08998 * 109.47185 * 295.00146 * 6 4 3 34 34 H 0.96703 * 113.99704 * 180.02562 * 7 6 4 35 35 H 0.97006 * 120.00016 * 335.00154 * 8 4 3 36 36 H 0.97006 * 120.00165 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46881 * 185.00331 * 14 12 11 38 38 H 1.09002 * 109.47196 * 304.99846 * 14 12 11 39 39 H 0.97001 * 119.99777 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.00498 * 0.02562 * 24 23 12 41 41 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 42 42 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 43 43 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.00572 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4403 -0.0597 5 1 2.7224 -1.9442 -0.9231 6 6 4.6816 -1.4362 -0.1854 7 8 5.2456 -0.6756 0.8848 8 7 2.7695 -2.1467 1.1639 9 6 2.6434 -3.4885 1.1562 10 8 2.8505 -4.1127 0.1336 11 7 2.2867 -4.1383 2.2818 12 6 2.1490 -5.5969 2.2733 13 1 1.7587 -5.9193 1.3080 14 6 1.1852 -6.0247 3.3818 15 6 -0.1926 -5.4925 3.0827 16 1 -0.3636 -4.9072 2.1912 17 6 -1.2346 -5.7518 3.9476 18 7 -1.0262 -6.4640 5.0334 19 14 -2.9425 -5.0927 3.5764 20 1 -2.9124 -4.3282 2.3036 21 1 -3.8940 -6.2259 3.4512 22 1 -3.3789 -4.1994 4.6795 23 6 3.4964 -6.2299 2.5072 24 6 4.3698 -5.6772 3.4250 25 6 5.6041 -6.2605 3.6427 26 6 5.9685 -7.3912 2.9358 27 6 5.0972 -7.9408 2.0142 28 6 3.8612 -7.3601 1.7997 29 1 -1.0497 -0.0004 -0.0002 30 1 3.0092 0.4774 0.9105 31 1 3.0091 0.5511 -0.8680 32 1 5.0528 -2.4599 -0.1386 33 1 4.9664 -0.9896 -1.1380 34 1 6.2114 -0.6297 0.8683 35 1 2.6039 -1.6487 1.9798 36 1 2.1211 -3.6403 3.0976 37 1 1.1511 -7.1129 3.4336 38 1 1.5293 -5.6262 4.3363 39 1 -1.7594 -6.6467 5.6416 40 1 4.0865 -4.7918 3.9748 41 1 6.2848 -5.8312 4.3630 42 1 6.9339 -7.8453 3.1040 43 1 5.3821 -8.8240 1.4616 44 1 3.1806 -7.7893 1.0793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921580631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:14 Heat of formation + Delta-G solvation = -10.883660 kcal Electronic energy + Delta-G solvation = -26330.984928 eV Core-core repulsion = 22635.478825 eV Total energy + Delta-G solvation = -3695.506103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89216 -38.76146 -37.41841 -35.45890 -34.84857 -33.04863 -32.64639 -31.22569 -30.44113 -29.70022 -28.57673 -26.70383 -24.85519 -22.28741 -22.04375 -21.78917 -20.40183 -19.74348 -18.56790 -17.75010 -17.38238 -16.77392 -16.15547 -16.01693 -15.16735 -15.03294 -14.72701 -14.55018 -14.39954 -13.94530 -13.73269 -13.55624 -13.41300 -13.02144 -12.96322 -12.73900 -12.47212 -12.08102 -11.89914 -11.71944 -11.46814 -11.09908 -10.89418 -10.70660 -10.56259 -10.41668 -10.34297 -10.18186 -9.98460 -9.73615 -9.60272 -9.24129 -8.84640 -8.49361 -8.43108 -8.23660 -8.12187 -6.06424 -4.09085 1.82960 1.85281 2.85478 2.88746 3.18606 3.27576 3.35958 3.40792 3.74321 4.19744 4.25791 4.35272 4.42293 4.75287 4.92103 5.14112 5.24940 5.30313 5.30407 5.31493 5.32480 5.42054 5.54327 5.60332 5.67782 5.94538 5.96358 5.99214 6.07593 6.21545 6.41019 6.47901 6.63792 6.79986 6.89274 6.90093 7.02844 7.17046 7.39960 7.45691 7.48033 7.56021 7.68707 7.73295 7.91211 8.29709 8.59973 8.97266 9.17291 9.55687 11.04229 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007430 B = 0.005892 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3767.366085 B = 4750.982561 C = 7917.800880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C -0.012 4.012 4 C 0.176 3.824 5 H 0.101 0.899 6 C 0.063 3.937 7 O -0.569 6.569 8 N -0.738 5.738 9 C 0.706 3.294 10 O -0.603 6.603 11 N -0.716 5.716 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.023 3.977 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.070 4.070 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.108 4.108 29 H 0.215 0.785 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 9.759 -6.958 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C -0.049 4.049 4 C 0.070 3.930 5 H 0.119 0.881 6 C -0.016 4.016 7 O -0.374 6.374 8 N -0.394 5.394 9 C 0.406 3.594 10 O -0.482 6.482 11 N -0.367 5.367 12 C 0.098 3.902 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.071 4.071 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.232 0.768 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.230 0.770 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.529 9.156 -7.591 17.275 hybrid contribution -0.774 0.632 0.550 1.141 sum 11.755 9.788 -7.041 16.839 Atomic orbital electron populations 1.24907 0.95999 0.99977 1.00690 1.22922 0.94378 1.01076 1.00873 1.18896 0.84953 0.96611 1.04457 1.20743 0.91820 0.91189 0.89295 0.88070 1.22712 0.94119 0.95632 0.89179 1.86451 1.25168 1.74853 1.50937 1.44996 1.75613 1.05595 1.13201 1.15982 0.77773 0.81286 0.84375 1.90854 1.58848 1.66526 1.31984 1.45114 1.72443 1.08008 1.11177 1.20099 0.90487 0.76931 1.02732 0.89640 1.19402 0.92473 0.97684 0.91860 1.21178 0.93180 1.33291 1.07775 0.92335 1.24985 0.98966 0.95181 0.95069 1.69974 1.32075 1.38930 1.12204 0.86551 0.84552 0.78760 0.78257 1.19765 1.21015 1.21085 1.20617 0.96716 0.95102 0.94663 1.20895 0.93702 0.99855 0.97928 1.21030 0.96776 0.96630 0.99965 1.20974 0.99413 0.97123 0.97940 1.21028 0.94466 0.99883 0.98806 1.21017 0.96268 0.96035 0.99333 0.76843 0.88357 0.88531 0.92438 0.92996 0.77702 0.76986 0.76981 0.94730 0.95779 0.92987 0.86660 0.86862 0.86949 0.86695 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 19.25 29.55 0.57 -1.99 16 2 C -0.19 -2.48 13.06 -37.12 -0.48 -2.96 16 3 C -0.01 -0.13 4.97 -29.52 -0.15 -0.27 16 4 C 0.18 2.19 2.34 -67.93 -0.16 2.03 16 5 H 0.10 1.44 7.57 -51.93 -0.39 1.05 16 6 C 0.06 0.66 6.85 37.16 0.25 0.92 16 7 O -0.57 -5.44 12.83 -35.23 -0.45 -5.89 16 8 N -0.74 -10.75 4.73 -58.68 -0.28 -11.03 16 9 C 0.71 13.07 8.49 -86.92 -0.74 12.33 16 10 O -0.60 -13.09 15.67 5.29 0.08 -13.01 16 11 N -0.72 -13.40 4.03 -59.81 -0.24 -13.64 16 12 C 0.20 4.24 2.12 -69.08 -0.15 4.09 16 13 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 14 C 0.02 0.56 4.50 -27.89 -0.13 0.44 16 15 C -0.52 -13.86 8.84 -34.44 -0.30 -14.17 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.07 -1.33 4.91 -104.62 -0.51 -1.84 16 24 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 25 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.14 -1.98 10.05 -39.59 -0.40 -2.38 16 27 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 28 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 29 H 0.21 2.20 7.80 -54.11 -0.42 1.78 16 30 H 0.10 0.98 7.73 -51.93 -0.40 0.58 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 2.10 9.12 45.56 0.42 2.52 16 35 H 0.40 5.21 8.62 -40.82 -0.35 4.85 16 36 H 0.40 6.91 8.62 -40.82 -0.35 6.56 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.12 1.89 7.71 -52.49 -0.40 1.49 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -33.58 384.87 -8.85 -42.43 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -5.64 Total: 15.52 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.84 Total: -11.38 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.22 Total: -49.77 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.37 Total: -18.90 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.58 -8.85 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921580631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.543 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds