Wall clock time and date at job start Tue Mar 31 2020 11:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47381 * 2.37084 * 3 2 1 5 5 H 1.09004 * 109.47223 * 55.00226 * 4 3 2 6 6 C 1.53005 * 109.47211 * 174.99923 * 4 3 2 7 7 O 1.42897 * 109.46745 * 55.00208 * 6 4 3 8 8 N 1.46498 * 109.47318 * 295.00007 * 4 3 2 9 9 C 1.34774 * 120.00250 * 155.00099 * 8 4 3 10 10 O 1.21585 * 120.00239 * 359.97438 * 9 8 4 11 11 N 1.34774 * 120.00101 * 180.02562 * 9 8 4 12 12 C 1.46506 * 120.00251 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 325.00368 * 12 11 9 14 14 C 1.52997 * 109.47289 * 205.00099 * 12 11 9 15 15 C 1.50699 * 109.47337 * 64.99998 * 14 12 11 16 16 H 1.08001 * 119.99707 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00057 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47158 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 119.99481 * 19 17 15 22 22 H 1.48500 * 109.47108 * 239.99908 * 19 17 15 23 23 C 1.50701 * 109.46956 * 84.99989 * 12 11 9 24 24 C 1.38230 * 119.99878 * 39.72605 * 23 12 11 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 12 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 H 4.44642 * 5.63192 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47212 * 242.37033 * 3 2 1 31 31 H 1.09004 * 109.46830 * 122.37218 * 3 2 1 32 32 H 1.08998 * 109.47137 * 175.00109 * 6 4 3 33 33 H 1.08998 * 109.47185 * 295.00146 * 6 4 3 34 34 H 0.96703 * 113.99704 * 180.02562 * 7 6 4 35 35 H 0.97006 * 120.00016 * 335.00154 * 8 4 3 36 36 H 0.97006 * 120.00165 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46881 * 185.00331 * 14 12 11 38 38 H 1.09002 * 109.47196 * 304.99846 * 14 12 11 39 39 H 0.97001 * 119.99777 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.00498 * 0.02562 * 24 23 12 41 41 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 42 42 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 43 43 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 44 44 H 1.08005 * 120.00572 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4403 -0.0597 5 1 2.7224 -1.9442 -0.9231 6 6 4.6816 -1.4362 -0.1854 7 8 5.2456 -0.6756 0.8848 8 7 2.7695 -2.1467 1.1639 9 6 2.6434 -3.4885 1.1562 10 8 2.8505 -4.1127 0.1336 11 7 2.2867 -4.1383 2.2818 12 6 2.1490 -5.5969 2.2733 13 1 1.7587 -5.9193 1.3080 14 6 1.1852 -6.0247 3.3818 15 6 -0.1926 -5.4925 3.0827 16 1 -0.3636 -4.9072 2.1912 17 6 -1.2346 -5.7518 3.9476 18 7 -1.0262 -6.4640 5.0334 19 14 -2.9425 -5.0927 3.5764 20 1 -2.9124 -4.3282 2.3036 21 1 -3.8940 -6.2259 3.4512 22 1 -3.3789 -4.1994 4.6795 23 6 3.4964 -6.2299 2.5072 24 6 4.3698 -5.6772 3.4250 25 6 5.6041 -6.2605 3.6427 26 6 5.9685 -7.3912 2.9358 27 6 5.0972 -7.9408 2.0142 28 6 3.8612 -7.3601 1.7997 29 1 -1.0497 -0.0004 -0.0002 30 1 3.0092 0.4774 0.9105 31 1 3.0091 0.5511 -0.8680 32 1 5.0528 -2.4599 -0.1386 33 1 4.9664 -0.9896 -1.1380 34 1 6.2114 -0.6297 0.8683 35 1 2.6039 -1.6487 1.9798 36 1 2.1211 -3.6403 3.0976 37 1 1.1511 -7.1129 3.4336 38 1 1.5293 -5.6262 4.3363 39 1 -1.7594 -6.6467 5.6416 40 1 4.0865 -4.7918 3.9748 41 1 6.2848 -5.8312 4.3630 42 1 6.9339 -7.8453 3.1040 43 1 5.3821 -8.8240 1.4616 44 1 3.1806 -7.7893 1.0793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921580631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:13 Heat of formation + Delta-G solvation = -33.978359 kcal Electronic energy + Delta-G solvation = -26331.986389 eV Core-core repulsion = 22635.478825 eV Total energy + Delta-G solvation = -3696.507565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31075 -40.02583 -38.46823 -36.78794 -36.08148 -34.73314 -34.15579 -32.56337 -31.69636 -30.88460 -30.33577 -27.57451 -26.66605 -23.80642 -23.51567 -22.99774 -21.64896 -21.25609 -19.72960 -18.95358 -18.56626 -18.28166 -17.68516 -17.26947 -16.53903 -16.41153 -16.28245 -15.92561 -15.54685 -15.16766 -14.99829 -14.85685 -14.46651 -14.25089 -14.18941 -14.11926 -14.04896 -13.65053 -13.40628 -12.97845 -12.89418 -12.64258 -12.58351 -12.47339 -12.13274 -11.85961 -11.58433 -11.34575 -11.30649 -11.23686 -11.01960 -10.81004 -10.59557 -10.23369 -9.75421 -9.67657 -9.48910 -8.20961 -6.30574 0.53195 0.57925 1.36466 1.38834 1.50651 1.81259 1.86848 1.94252 2.28350 2.39048 2.97237 3.12328 3.39631 3.44270 3.48717 3.96578 4.02432 4.05482 4.21679 4.22647 4.33672 4.39216 4.45077 4.55612 4.66935 4.69515 4.76983 4.80585 4.81866 5.02561 5.14556 5.17906 5.21733 5.30256 5.43619 5.61344 5.62965 5.64762 5.66428 5.78238 5.90721 6.14037 6.17753 6.22366 6.71688 6.81863 6.93065 7.19343 7.38287 7.70705 8.89983 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007430 B = 0.005892 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3767.366085 B = 4750.982561 C = 7917.800880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.208 4.208 3 C -0.003 4.003 4 C 0.169 3.831 5 H 0.080 0.920 6 C 0.075 3.925 7 O -0.576 6.576 8 N -0.725 5.725 9 C 0.704 3.296 10 O -0.637 6.637 11 N -0.713 5.713 12 C 0.220 3.780 13 H 0.054 0.946 14 C 0.038 3.962 15 C -0.526 4.526 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.275 1.275 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.133 4.133 29 H 0.230 0.770 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.405 0.595 36 H 0.402 0.598 37 H 0.005 0.995 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.828 11.078 -6.964 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.208 4.208 3 C -0.040 4.040 4 C 0.064 3.936 5 H 0.098 0.902 6 C -0.005 4.005 7 O -0.384 6.384 8 N -0.380 5.380 9 C 0.404 3.596 10 O -0.520 6.520 11 N -0.366 5.366 12 C 0.114 3.886 13 H 0.073 0.927 14 C 0.001 3.999 15 C -0.564 4.564 16 H 0.068 0.932 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.200 1.200 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.152 4.152 29 H 0.247 0.753 30 H 0.127 0.873 31 H 0.144 0.856 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.240 0.760 36 H 0.237 0.763 37 H 0.023 0.977 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.297 10.524 -7.590 19.307 hybrid contribution -1.238 0.212 0.547 1.369 sum 13.059 10.735 -7.043 18.314 Atomic orbital electron populations 1.25565 0.97046 1.00053 1.01057 1.23588 0.95454 1.01025 1.00696 1.18973 0.83508 0.95230 1.06276 1.20940 0.93497 0.91859 0.87349 0.90228 1.22472 0.92365 0.94659 0.90962 1.86398 1.27076 1.74275 1.50654 1.44958 1.74501 1.04103 1.14471 1.16082 0.77586 0.82396 0.83534 1.90822 1.60414 1.67632 1.33111 1.44935 1.72692 1.07255 1.11693 1.19554 0.91260 0.78357 0.99438 0.92747 1.19135 0.92660 0.95576 0.92554 1.21392 0.94533 1.33096 1.07358 0.93196 1.25761 1.02761 0.95379 0.94852 1.70078 1.33350 1.40016 1.13103 0.85534 0.79851 0.78235 0.78223 1.19576 1.20627 1.20035 1.20484 0.96213 0.96311 0.96798 1.21024 0.94616 1.00293 0.97807 1.21420 0.96084 0.96579 1.00154 1.21455 1.00536 0.96343 0.96355 1.21378 0.93294 1.00479 0.98976 1.21167 0.97791 0.96346 0.99848 0.75345 0.87332 0.85563 0.95228 0.89778 0.75464 0.76008 0.76338 0.97658 0.97026 0.92720 0.86525 0.83692 0.83066 0.83833 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.55 19.25 74.32 1.43 -4.12 16 2 C -0.21 -5.13 13.06 31.12 0.41 -4.73 16 3 C 0.00 -0.06 4.97 28.79 0.14 0.08 16 4 C 0.17 4.07 2.34 44.99 0.11 4.17 16 5 H 0.08 2.29 7.57 -2.38 -0.02 2.27 16 6 C 0.07 1.45 6.85 71.98 0.49 1.94 16 7 O -0.58 -9.59 12.83 -148.98 -1.91 -11.50 16 8 N -0.72 -21.12 4.73 -457.83 -2.16 -23.28 16 9 C 0.70 26.92 8.49 179.06 1.52 28.44 16 10 O -0.64 -28.89 15.67 -3.99 -0.06 -28.95 16 11 N -0.71 -27.90 4.03 -461.41 -1.86 -29.75 16 12 C 0.22 9.76 2.12 44.24 0.09 9.85 16 13 H 0.05 2.72 7.44 -2.39 -0.02 2.70 16 14 C 0.04 1.97 4.50 29.85 0.13 2.10 16 15 C -0.53 -29.28 8.84 25.60 0.23 -29.06 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C -0.10 -3.82 4.91 -19.87 -0.10 -3.92 16 24 C -0.12 -4.11 9.33 22.27 0.21 -3.90 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 27 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 28 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 29 H 0.23 4.59 7.80 -4.43 -0.03 4.56 16 30 H 0.11 1.88 7.73 -2.39 -0.02 1.86 16 31 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.40 3.32 9.12 -74.06 -0.68 2.64 16 35 H 0.40 10.43 8.62 -92.70 -0.80 9.63 16 36 H 0.40 14.54 8.62 -92.70 -0.80 13.74 16 37 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.12 3.86 7.71 -2.91 -0.02 3.84 16 41 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.11 4.10 8.04 -2.91 -0.02 4.08 16 Total: -1.00 -74.96 384.87 1.08 -73.88 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -1.25 Total: 40.18 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 6.01 Total: -12.51 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.74 Total: -107.42 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.97 Total: -40.45 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.96 1.08 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921580631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.906 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds