Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47526 * 2 1 4 4 C 1.53002 * 109.47052 * 120.00023 * 2 1 3 5 5 N 1.46901 * 109.47310 * 61.86423 * 4 2 1 6 6 C 1.46838 * 111.00166 * 176.48246 * 5 4 2 7 7 C 1.53041 * 109.52507 * 174.15879 * 6 5 4 8 8 C 1.53122 * 109.27851 * 59.17523 * 7 6 5 9 9 H 1.08999 * 109.52050 * 62.31533 * 8 7 6 10 10 N 1.46496 * 109.52017 * 182.44362 * 8 7 6 11 11 C 1.34774 * 119.99945 * 274.87182 * 10 8 7 12 12 O 1.21281 * 120.00204 * 359.97438 * 11 10 8 13 13 C 1.50703 * 120.00057 * 180.02562 * 11 10 8 14 14 S 1.81006 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99740 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00500 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99927 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00105 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00192 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47267 * 59.99477 * 19 17 15 21 21 H 1.48502 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46949 * 299.99678 * 19 17 15 23 23 C 1.53123 * 109.20968 * 302.37790 * 8 7 6 24 24 H 1.08992 * 109.50179 * 297.68263 * 23 8 7 25 25 O 1.42903 * 109.49853 * 177.56502 * 23 8 7 26 26 C 1.46849 * 111.00193 * 52.26395 * 5 4 2 27 27 H 1.09002 * 109.47411 * 55.70272 * 1 2 3 28 28 H 1.08998 * 109.47255 * 175.70309 * 1 2 3 29 29 H 1.08996 * 109.47417 * 295.70350 * 1 2 3 30 30 H 1.09009 * 109.47189 * 239.99566 * 2 1 3 31 31 H 1.09000 * 109.47289 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46521 * 299.99554 * 3 2 1 33 33 H 1.08996 * 109.46940 * 59.99507 * 3 2 1 34 34 H 1.08999 * 109.46790 * 301.85980 * 4 2 1 35 35 H 1.09001 * 109.47363 * 181.85938 * 4 2 1 36 36 H 1.09000 * 109.47026 * 54.13465 * 6 5 4 37 37 H 1.09006 * 109.45947 * 294.16969 * 6 5 4 38 38 H 1.09002 * 109.50080 * 299.23428 * 7 6 5 39 39 H 1.09001 * 109.53177 * 179.13701 * 7 6 5 40 40 H 0.97003 * 120.00143 * 94.86884 * 10 8 7 41 41 H 1.09000 * 109.47209 * 60.00308 * 13 11 10 42 42 H 1.08997 * 109.47169 * 300.00159 * 13 11 10 43 43 H 0.97003 * 120.00175 * 179.97438 * 18 17 15 44 44 H 0.96696 * 113.99674 * 179.97438 * 25 23 8 45 45 H 1.09001 * 109.46393 * 305.85850 * 26 5 4 46 46 H 1.08997 * 109.45879 * 65.82671 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5874 -2.1187 1.2270 6 6 2.1280 -2.8652 2.3701 7 6 1.5223 -4.2704 2.3958 8 6 1.8591 -4.9901 1.0869 9 1 2.9401 -5.0979 0.9982 10 7 1.2329 -6.3145 1.0813 11 6 1.8580 -7.3579 1.6617 12 8 2.9391 -7.2006 2.1883 13 6 1.2140 -8.7204 1.6555 14 16 2.2915 -9.9009 2.5051 15 6 1.3224 -11.3644 2.3524 16 1 0.3691 -11.3305 1.8459 17 6 1.7835 -12.5608 2.8840 18 7 2.9452 -12.6021 3.5017 19 14 0.7564 -14.1126 2.7215 20 1 0.5437 -14.4172 1.2838 21 1 1.4662 -15.2459 3.3674 22 1 -0.5569 -13.9084 3.3838 23 6 1.3284 -4.1681 -0.0910 24 1 0.2431 -4.0944 -0.0236 25 8 1.6888 -4.8055 -1.3182 26 6 1.9386 -2.7654 -0.0438 27 1 -0.3634 0.5791 -0.8490 28 1 -0.3634 -1.0247 -0.0770 29 1 -0.3634 0.4457 0.9259 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6496 -0.2270 2.1389 35 1 3.1294 -0.6925 1.2661 36 1 1.8780 -2.3450 3.2947 37 1 3.2115 -2.9384 2.2763 38 1 0.4400 -4.1983 2.5034 39 1 1.9351 -4.8298 3.2353 40 1 0.3683 -6.4404 0.6598 41 1 1.0603 -9.0449 0.6263 42 1 0.2534 -8.6706 2.1680 43 1 3.2673 -13.4381 3.8736 44 1 1.3840 -4.3385 -2.1082 45 1 1.5509 -2.1727 -0.8723 46 1 3.0230 -2.8390 -0.1262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099686644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = -95.746787 kcal Electronic energy + Delta-G solvation = -24538.573309 eV Core-core repulsion = 20974.831215 eV Total energy + Delta-G solvation = -3563.742093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28594 -38.75762 -37.14365 -35.55388 -34.09032 -32.39275 -31.31994 -30.04688 -28.83037 -27.48191 -26.05724 -25.40472 -23.74537 -22.73408 -20.46102 -20.35966 -19.82975 -17.82816 -17.59344 -16.84439 -16.30289 -15.79123 -15.49944 -15.40186 -14.87804 -14.77242 -14.52294 -14.17394 -13.94347 -13.59393 -13.41014 -13.23474 -12.96385 -12.87564 -12.65486 -12.51714 -12.48998 -12.12884 -11.95359 -11.60303 -11.36545 -11.32178 -11.10023 -11.01355 -11.00962 -10.94924 -10.75015 -10.49606 -10.31146 -9.78146 -9.30255 -9.02821 -8.81383 -8.66215 -8.19342 -6.45512 -6.17993 -3.88085 3.07084 3.17534 3.26070 3.29819 3.33669 3.39800 3.74541 3.95329 4.24144 4.28336 4.50520 4.56130 4.67469 4.72194 4.85204 4.90233 5.01340 5.10911 5.15922 5.16873 5.21489 5.27255 5.33436 5.35910 5.43219 5.46369 5.52701 5.59531 5.60678 5.65012 5.71164 5.73439 5.89283 5.95808 5.98096 6.01899 6.15208 6.20837 6.66005 6.68866 6.73344 7.39251 7.62798 7.80506 8.38661 8.70055 9.27066 10.89362 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.039746 B = 0.002248 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.305259 B =12455.076324 C =12712.705462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C -0.147 4.147 4 C 0.060 3.940 5 N -0.532 5.532 6 C 0.056 3.944 7 C -0.125 4.125 8 C 0.156 3.844 9 H 0.090 0.910 10 N -0.726 5.726 11 C 0.535 3.465 12 O -0.520 6.520 13 C -0.152 4.152 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.102 3.898 24 H 0.068 0.932 25 O -0.556 6.556 26 C 0.022 3.978 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.376 0.624 45 H 0.086 0.914 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 27.558 -8.503 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.068 4.068 5 N -0.258 5.258 6 C -0.072 4.072 7 C -0.164 4.164 8 C 0.051 3.949 9 H 0.108 0.892 10 N -0.379 5.379 11 C 0.321 3.679 12 O -0.395 6.395 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C 0.042 3.958 24 H 0.086 0.914 25 O -0.360 6.360 26 C -0.107 4.107 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.223 0.777 45 H 0.104 0.896 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.387 27.244 -7.071 28.486 hybrid contribution -1.669 -0.773 -1.364 2.290 sum -6.056 26.470 -8.435 28.434 Atomic orbital electron populations 1.21725 0.94277 1.02337 1.01194 1.21262 0.97018 0.95859 0.97783 1.21817 1.00879 0.95801 1.02007 1.22202 0.97565 0.88094 0.98905 1.61941 1.59929 1.01905 1.02022 1.22106 0.97238 0.94095 0.93767 1.21983 1.02185 0.94329 0.97947 1.20861 0.99397 0.82192 0.92483 0.89240 1.45887 1.23793 1.08012 1.60236 1.20281 0.85178 0.85390 0.77062 1.90687 1.20674 1.84542 1.43558 1.23524 1.04831 0.96156 1.05793 1.85371 1.26025 1.00091 1.71884 1.22836 1.07642 0.94790 1.43073 0.90996 1.24993 0.95369 0.98700 0.94559 1.70013 1.18254 1.27363 1.34717 0.86225 0.79777 0.80983 0.78513 1.19954 1.20838 1.19956 1.22032 0.98499 0.90509 0.84755 0.91378 1.86665 1.81471 1.52682 1.15148 1.22873 0.99401 0.95099 0.93318 0.93430 0.91745 0.92781 0.91088 0.92807 0.92463 0.92519 0.90367 0.94795 0.90052 0.94277 0.90625 0.89699 0.76822 0.89240 0.89299 0.92172 0.77692 0.89611 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.93 37.15 0.33 -0.49 16 2 C -0.10 -0.59 2.44 -90.62 -0.22 -0.81 16 3 C -0.15 -0.75 9.19 37.16 0.34 -0.41 16 4 C 0.06 0.42 4.54 -3.82 -0.02 0.40 16 5 N -0.53 -4.34 4.16 -234.67 -0.98 -5.32 16 6 C 0.06 0.53 5.46 -3.84 -0.02 0.51 16 7 C -0.13 -1.42 5.67 -26.65 -0.15 -1.57 16 8 C 0.16 2.00 2.20 -67.81 -0.15 1.85 16 9 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 10 N -0.73 -10.50 4.99 -53.69 -0.27 -10.77 16 11 C 0.53 10.41 7.82 -10.98 -0.09 10.33 16 12 O -0.52 -12.12 15.53 5.56 0.09 -12.04 16 13 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 15 C -0.54 -15.51 9.50 30.94 0.29 -15.21 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.52 13.22 55.49 0.73 -25.78 16 19 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.10 0.97 3.14 -26.65 -0.08 0.89 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 O -0.56 -5.64 13.23 -35.23 -0.47 -6.11 16 26 C 0.02 0.18 4.61 -3.83 -0.02 0.16 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.44 7.62 -51.93 -0.40 0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.43 6.08 -51.92 -0.32 0.11 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.40 4.74 8.60 -40.82 -0.35 4.39 16 41 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.38 2.03 9.08 45.56 0.41 2.45 16 45 H 0.09 0.56 5.65 -51.93 -0.29 0.26 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -35.07 380.57 -9.26 -44.33 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.22 Total: 2.48 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.35 Total: -5.31 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.51 Total: -41.87 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.38 Total: -18.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.07 -9.26 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.416 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds