Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47526 * 2 1 4 4 C 1.53002 * 109.47052 * 120.00023 * 2 1 3 5 5 N 1.46901 * 109.47310 * 61.86423 * 4 2 1 6 6 C 1.46838 * 111.00166 * 176.48246 * 5 4 2 7 7 C 1.53041 * 109.52507 * 174.15879 * 6 5 4 8 8 C 1.53122 * 109.27851 * 59.17523 * 7 6 5 9 9 H 1.08999 * 109.52050 * 62.31533 * 8 7 6 10 10 N 1.46496 * 109.52017 * 182.44362 * 8 7 6 11 11 C 1.34774 * 119.99945 * 274.87182 * 10 8 7 12 12 O 1.21281 * 120.00204 * 359.97438 * 11 10 8 13 13 C 1.50703 * 120.00057 * 180.02562 * 11 10 8 14 14 S 1.81006 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99740 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00500 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99927 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00105 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00192 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47267 * 59.99477 * 19 17 15 21 21 H 1.48502 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46949 * 299.99678 * 19 17 15 23 23 C 1.53123 * 109.20968 * 302.37790 * 8 7 6 24 24 H 1.08992 * 109.50179 * 297.68263 * 23 8 7 25 25 O 1.42903 * 109.49853 * 177.56502 * 23 8 7 26 26 C 1.46849 * 111.00193 * 52.26395 * 5 4 2 27 27 H 1.09002 * 109.47411 * 55.70272 * 1 2 3 28 28 H 1.08998 * 109.47255 * 175.70309 * 1 2 3 29 29 H 1.08996 * 109.47417 * 295.70350 * 1 2 3 30 30 H 1.09009 * 109.47189 * 239.99566 * 2 1 3 31 31 H 1.09000 * 109.47289 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46521 * 299.99554 * 3 2 1 33 33 H 1.08996 * 109.46940 * 59.99507 * 3 2 1 34 34 H 1.08999 * 109.46790 * 301.85980 * 4 2 1 35 35 H 1.09001 * 109.47363 * 181.85938 * 4 2 1 36 36 H 1.09000 * 109.47026 * 54.13465 * 6 5 4 37 37 H 1.09006 * 109.45947 * 294.16969 * 6 5 4 38 38 H 1.09002 * 109.50080 * 299.23428 * 7 6 5 39 39 H 1.09001 * 109.53177 * 179.13701 * 7 6 5 40 40 H 0.97003 * 120.00143 * 94.86884 * 10 8 7 41 41 H 1.09000 * 109.47209 * 60.00308 * 13 11 10 42 42 H 1.08997 * 109.47169 * 300.00159 * 13 11 10 43 43 H 0.97003 * 120.00175 * 179.97438 * 18 17 15 44 44 H 0.96696 * 113.99674 * 179.97438 * 25 23 8 45 45 H 1.09001 * 109.46393 * 305.85850 * 26 5 4 46 46 H 1.08997 * 109.45879 * 65.82671 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5874 -2.1187 1.2270 6 6 2.1280 -2.8652 2.3701 7 6 1.5223 -4.2704 2.3958 8 6 1.8591 -4.9901 1.0869 9 1 2.9401 -5.0979 0.9982 10 7 1.2329 -6.3145 1.0813 11 6 1.8580 -7.3579 1.6617 12 8 2.9391 -7.2006 2.1883 13 6 1.2140 -8.7204 1.6555 14 16 2.2915 -9.9009 2.5051 15 6 1.3224 -11.3644 2.3524 16 1 0.3691 -11.3305 1.8459 17 6 1.7835 -12.5608 2.8840 18 7 2.9452 -12.6021 3.5017 19 14 0.7564 -14.1126 2.7215 20 1 0.5437 -14.4172 1.2838 21 1 1.4662 -15.2459 3.3674 22 1 -0.5569 -13.9084 3.3838 23 6 1.3284 -4.1681 -0.0910 24 1 0.2431 -4.0944 -0.0236 25 8 1.6888 -4.8055 -1.3182 26 6 1.9386 -2.7654 -0.0438 27 1 -0.3634 0.5791 -0.8490 28 1 -0.3634 -1.0247 -0.0770 29 1 -0.3634 0.4457 0.9259 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6496 -0.2270 2.1389 35 1 3.1294 -0.6925 1.2661 36 1 1.8780 -2.3450 3.2947 37 1 3.2115 -2.9384 2.2763 38 1 0.4400 -4.1983 2.5034 39 1 1.9351 -4.8298 3.2353 40 1 0.3683 -6.4404 0.6598 41 1 1.0603 -9.0449 0.6263 42 1 0.2534 -8.6706 2.1680 43 1 3.2673 -13.4381 3.8736 44 1 1.3840 -4.3385 -2.1082 45 1 1.5509 -2.1727 -0.8723 46 1 3.0230 -2.8390 -0.1262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099686644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = -123.285611 kcal Electronic energy + Delta-G solvation = -24539.767482 eV Core-core repulsion = 20974.831215 eV Total energy + Delta-G solvation = -3564.936266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29723 -39.98520 -37.90962 -36.36264 -35.16524 -34.58348 -32.44066 -30.90448 -30.18903 -27.90437 -27.69673 -26.76330 -24.54285 -23.55961 -21.75002 -21.28928 -20.52520 -19.79349 -18.38814 -17.88854 -17.82006 -16.87978 -16.61571 -16.47165 -16.27867 -16.01143 -15.83637 -15.31527 -14.90428 -14.72942 -14.47793 -14.30977 -14.13412 -13.95134 -13.58484 -13.36288 -13.24286 -13.16891 -13.06870 -12.86462 -12.71496 -12.64590 -12.41845 -12.21854 -11.85935 -11.76419 -11.66014 -11.61110 -11.23937 -11.12914 -11.10289 -10.81557 -10.28671 -10.11914 -9.36552 -8.67226 -8.34397 -6.12907 1.26248 1.44200 1.46315 1.56434 1.61213 2.23674 2.28497 2.71293 2.99353 3.17296 3.32168 3.61422 3.86720 3.87453 3.96953 4.00350 4.06909 4.12524 4.23308 4.26969 4.29885 4.41913 4.50063 4.54784 4.61124 4.66858 4.74098 4.83202 4.85628 4.87626 4.91887 4.98487 5.09669 5.15414 5.18835 5.30642 5.41364 5.46590 5.46847 5.56785 5.98372 6.02997 6.19631 6.49970 6.87448 7.06350 7.24523 8.74623 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.039746 B = 0.002248 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.305259 B =12455.076324 C =12712.705462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.146 4.146 4 C 0.060 3.940 5 N -0.528 5.528 6 C 0.061 3.939 7 C -0.118 4.118 8 C 0.151 3.849 9 H 0.053 0.947 10 N -0.702 5.702 11 C 0.535 3.465 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.151 6.151 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.261 1.261 23 C 0.113 3.887 24 H 0.089 0.911 25 O -0.577 6.577 26 C 0.028 3.972 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.398 0.602 45 H 0.111 0.889 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 28.723 -10.029 31.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.068 4.068 5 N -0.253 5.253 6 C -0.068 4.068 7 C -0.157 4.157 8 C 0.046 3.954 9 H 0.072 0.928 10 N -0.355 5.355 11 C 0.321 3.679 12 O -0.445 6.445 13 C -0.279 4.279 14 S 0.076 5.924 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.185 1.185 23 C 0.053 3.947 24 H 0.107 0.893 25 O -0.385 6.385 26 C -0.101 4.101 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.249 0.751 45 H 0.129 0.871 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.090 28.465 -8.644 30.582 hybrid contribution -0.843 -0.994 -0.947 1.611 sum -7.933 27.471 -9.592 30.160 Atomic orbital electron populations 1.21691 0.94039 1.02063 1.01395 1.21237 0.97085 0.96162 0.97053 1.21800 1.00809 0.95311 1.02424 1.22263 0.97344 0.87286 0.99885 1.61971 1.59528 1.02365 1.01477 1.22029 0.96318 0.93278 0.95132 1.21865 1.02896 0.94932 0.95977 1.21043 0.97486 0.81655 0.95211 0.92823 1.45664 1.23909 1.07598 1.58291 1.20073 0.84678 0.85890 0.77243 1.90676 1.22737 1.85148 1.45960 1.23358 1.03821 0.94962 1.05756 1.85566 1.29841 1.03118 1.73874 1.23176 1.07935 0.95070 1.43321 0.89904 1.26161 0.96649 1.02675 0.93787 1.70184 1.20343 1.28461 1.35800 0.84982 0.78020 0.75773 0.79079 1.18687 1.20348 1.18549 1.21907 0.99319 0.90073 0.83374 0.89311 1.86611 1.82002 1.53666 1.16192 1.22858 0.98446 0.94667 0.94147 0.92721 0.92282 0.93049 0.90961 0.92942 0.91846 0.92330 0.89889 0.95312 0.88695 0.95635 0.89171 0.92518 0.74847 0.87563 0.87083 0.91987 0.75115 0.87140 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.93 71.98 0.64 -0.60 16 2 C -0.10 -0.91 2.44 -10.80 -0.03 -0.94 16 3 C -0.15 -1.18 9.19 71.98 0.66 -0.52 16 4 C 0.06 0.72 4.54 86.30 0.39 1.11 16 5 N -0.53 -7.67 4.16 -896.35 -3.73 -11.40 16 6 C 0.06 1.10 5.46 86.33 0.47 1.58 16 7 C -0.12 -2.63 5.67 30.65 0.17 -2.45 16 8 C 0.15 3.82 2.20 45.07 0.10 3.92 16 9 H 0.05 1.77 7.58 -2.39 -0.02 1.76 16 10 N -0.70 -19.67 4.99 -442.15 -2.21 -21.88 16 11 C 0.54 21.03 7.82 87.66 0.69 21.72 16 12 O -0.57 -27.59 15.53 -3.03 -0.05 -27.64 16 13 C -0.13 -5.30 6.16 71.24 0.44 -4.87 16 14 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 15 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 16 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.86 13.22 21.65 0.29 -56.58 16 19 Si 1.00 44.17 29.55 68.60 2.03 46.19 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 C 0.11 1.93 3.14 30.65 0.10 2.03 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 25 O -0.58 -10.53 13.23 -148.98 -1.97 -12.50 16 26 C 0.03 0.40 4.61 86.33 0.40 0.80 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.62 7.62 -2.39 -0.02 0.60 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.67 6.08 -2.38 -0.01 0.66 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 1.47 8.12 -2.39 -0.02 1.46 16 37 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.41 8.89 8.60 -92.71 -0.80 8.10 16 41 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 42 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.40 3.17 9.08 -74.06 -0.67 2.50 16 45 H 0.11 1.09 5.65 -2.39 -0.01 1.08 16 46 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -78.83 380.57 -2.16 -80.99 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.50 Total: 20.91 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.14 Total: -8.30 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -5.65 Total: -89.85 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -2.02 Total: -40.14 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -78.83 -2.16 -80.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.295 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds