Wall clock time and date at job start Tue Mar 31 2020 11:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52993 * 109.47321 * 120.00687 * 2 1 3 5 5 C 1.52999 * 109.47187 * 175.00371 * 4 2 1 6 6 N 1.46898 * 109.47338 * 182.94959 * 5 4 2 7 7 C 1.48816 * 111.18371 * 58.37029 * 6 5 4 8 8 C 1.54934 * 103.34571 * 159.50791 * 7 6 5 9 9 H 1.09004 * 110.72767 * 81.05258 * 8 7 6 10 10 N 1.46510 * 110.72203 * 204.32928 * 8 7 6 11 11 C 1.34770 * 119.99823 * 268.50363 * 10 8 7 12 12 O 1.21281 * 120.00586 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99562 * 180.02562 * 11 10 8 14 14 S 1.81007 * 109.46913 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99802 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99668 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99689 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99552 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00079 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47045 * 89.99826 * 19 17 15 21 21 H 1.48501 * 109.46725 * 209.99593 * 19 17 15 22 22 H 1.48492 * 109.47414 * 329.99659 * 19 17 15 23 23 C 1.54590 * 102.92379 * 322.69101 * 8 7 6 24 24 H 1.08995 * 110.39384 * 140.92081 * 23 8 7 25 25 O 1.42905 * 110.30823 * 263.04230 * 23 8 7 26 26 C 1.47897 * 111.00096 * 175.70621 * 6 5 4 27 27 H 1.09000 * 109.47423 * 299.99551 * 1 2 3 28 28 H 1.09001 * 109.47435 * 59.99691 * 1 2 3 29 29 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46708 * 240.00665 * 2 1 3 31 31 H 1.09004 * 109.47009 * 60.00273 * 3 2 1 32 32 H 1.08997 * 109.47096 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47255 * 300.00418 * 3 2 1 34 34 H 1.08996 * 109.47184 * 54.99653 * 4 2 1 35 35 H 1.09008 * 109.46682 * 294.99856 * 4 2 1 36 36 H 1.09000 * 109.47451 * 62.94694 * 5 4 2 37 37 H 1.09004 * 109.46418 * 302.94521 * 5 4 2 38 38 H 1.09001 * 110.52118 * 41.07462 * 7 6 5 39 39 H 1.09008 * 110.69560 * 278.02379 * 7 6 5 40 40 H 0.96997 * 119.99662 * 88.50601 * 10 8 7 41 41 H 1.09001 * 109.46774 * 299.99516 * 13 11 10 42 42 H 1.08998 * 109.47610 * 59.99831 * 13 11 10 43 43 H 0.96999 * 119.99734 * 180.02562 * 18 17 15 44 44 H 0.96693 * 114.00045 * 177.16820 * 25 23 8 45 45 H 1.09000 * 109.91722 * 94.80749 * 26 6 5 46 46 H 1.09003 * 109.91750 * 333.70476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.8310 1.1878 6 7 4.0487 -1.5853 2.3518 7 6 3.4444 -2.9443 2.4010 8 6 4.4202 -3.7371 3.3065 9 1 4.2182 -3.5377 4.3589 10 7 4.3389 -5.1725 3.0245 11 6 3.4856 -5.9488 3.7213 12 8 2.7853 -5.4593 4.5820 13 6 3.4024 -7.4253 3.4316 14 16 2.1753 -8.1861 4.5232 15 6 2.2816 -9.8601 3.9834 16 1 2.9678 -10.1304 3.1944 17 6 1.4836 -10.8311 4.5722 18 7 1.5634 -12.0817 4.1693 19 14 0.2964 -10.3632 5.9364 20 1 -1.0160 -9.9963 5.3462 21 1 0.1206 -11.5157 6.8563 22 1 0.8407 -9.2060 6.6911 23 6 5.8023 -3.1769 2.8991 24 1 6.4408 -3.0666 3.7755 25 8 6.4223 -4.0356 1.9397 26 6 5.5099 -1.8002 2.2740 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6054 -1.7199 1.2949 35 1 1.7516 -0.1584 2.1369 36 1 4.0016 0.1676 1.1948 37 1 3.8553 -1.3483 0.2733 38 1 3.4046 -3.3812 1.4032 39 1 2.4500 -2.9079 2.8462 40 1 4.8993 -5.5640 2.3364 41 1 3.1072 -7.5757 2.3931 42 1 4.3760 -7.8847 3.6027 43 1 1.0055 -12.7603 4.5805 44 1 7.2736 -3.7122 1.6146 45 1 6.0300 -1.0213 2.8316 46 1 5.8320 -1.7892 1.2327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219219917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:58 Heat of formation + Delta-G solvation = -95.211139 kcal Electronic energy + Delta-G solvation = -24321.985348 eV Core-core repulsion = 20758.266482 eV Total energy + Delta-G solvation = -3563.718866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29234 -38.68608 -37.33151 -35.74136 -34.11572 -32.41428 -31.25675 -29.68834 -28.06727 -27.50150 -27.36246 -25.58220 -23.62349 -21.31361 -21.28702 -20.36175 -20.15392 -17.99134 -17.67006 -16.79932 -16.22206 -15.92184 -15.52870 -15.09364 -14.96953 -14.88105 -14.77792 -14.18664 -14.11283 -13.73895 -13.53806 -13.43938 -13.13425 -12.77166 -12.66220 -12.52140 -12.43070 -12.12168 -11.79038 -11.72994 -11.50808 -11.33591 -11.23421 -11.05241 -10.98703 -10.94078 -10.73504 -10.56440 -10.41398 -9.83567 -9.50940 -8.99357 -8.93510 -8.74539 -8.47068 -6.88769 -6.26591 -3.97933 2.74882 2.98574 3.19123 3.35065 3.52520 3.55453 3.77436 3.89447 4.19173 4.35504 4.39631 4.53910 4.56943 4.65864 4.70146 4.79152 4.94376 5.02127 5.10264 5.12388 5.13142 5.24898 5.28639 5.32342 5.37428 5.40048 5.45340 5.52601 5.60148 5.69505 5.71525 5.79650 5.82420 5.85219 5.90282 6.01565 6.06743 6.09453 6.40815 6.61000 6.67127 7.22491 7.74031 7.96653 8.44428 8.54652 9.19646 10.82682 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.002729 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.465797 B =10259.359481 C =11475.422273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.049 3.951 6 N -0.512 5.512 7 C 0.024 3.976 8 C 0.154 3.846 9 H 0.112 0.888 10 N -0.719 5.719 11 C 0.531 3.469 12 O -0.521 6.521 13 C -0.123 4.123 14 S -0.141 6.141 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.235 1.235 23 C 0.086 3.914 24 H 0.076 0.924 25 O -0.561 6.561 26 C 0.005 3.995 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.409 0.591 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.383 0.617 45 H 0.086 0.914 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 26.458 -9.109 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.079 4.079 6 N -0.237 5.237 7 C -0.104 4.104 8 C 0.047 3.953 9 H 0.130 0.870 10 N -0.374 5.374 11 C 0.317 3.683 12 O -0.395 6.395 13 C -0.273 4.273 14 S 0.085 5.915 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.518 5.518 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C 0.026 3.974 24 H 0.094 0.906 25 O -0.367 6.367 26 C -0.124 4.124 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.246 0.754 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.231 0.769 45 H 0.104 0.896 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.477 27.032 -7.096 28.689 hybrid contribution 1.284 -0.903 -1.745 2.347 sum 7.761 26.129 -8.841 28.655 Atomic orbital electron populations 1.21834 0.94974 1.01994 1.01731 1.21097 0.95997 0.96298 0.98125 1.21891 1.00918 0.95998 1.01732 1.21695 0.94143 1.01271 0.98246 1.22373 0.96220 0.98519 0.90784 1.64843 1.03718 1.15111 1.39991 1.23744 0.99635 0.87777 0.99293 1.21809 0.91710 0.80943 1.00841 0.86990 1.45715 1.43372 1.07144 1.41177 1.20340 0.78945 0.88338 0.80700 1.90696 1.42039 1.74959 1.31838 1.23266 1.05317 0.93513 1.05235 1.84764 1.50664 1.07153 1.48943 1.22329 1.28663 0.90549 1.25276 0.89393 1.24721 0.96162 0.94017 0.96473 1.69943 1.39380 1.00706 1.41737 0.86726 0.82281 0.80064 0.82735 1.19228 1.19981 1.15886 1.22945 0.94553 0.88608 0.91282 0.90612 1.86383 1.39311 1.49852 1.61166 1.23659 0.90671 0.97556 1.00506 0.92556 0.92775 0.92528 0.91455 0.92538 0.92682 0.92913 0.91553 0.90901 0.90444 0.94751 0.92902 0.88929 0.75417 0.88545 0.88434 0.91974 0.76871 0.89564 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.69 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -0.92 8.95 37.16 0.33 -0.59 16 4 C -0.12 -0.97 4.58 -26.74 -0.12 -1.09 16 5 C 0.05 0.40 4.53 -3.83 -0.02 0.38 16 6 N -0.51 -4.88 5.36 -230.20 -1.23 -6.11 16 7 C 0.02 0.28 5.04 -1.74 -0.01 0.27 16 8 C 0.15 1.86 3.38 -66.07 -0.22 1.63 16 9 H 0.11 1.54 7.55 -51.93 -0.39 1.15 16 10 N -0.72 -9.96 5.10 -52.00 -0.27 -10.22 16 11 C 0.53 9.69 7.85 -10.99 -0.09 9.61 16 12 O -0.52 -11.29 15.51 5.56 0.09 -11.20 16 13 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 14 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 15 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 16 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 17 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 19 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 23 C 0.09 0.74 4.30 -25.38 -0.11 0.63 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 O -0.56 -4.46 11.64 -35.23 -0.41 -4.87 16 26 C 0.00 0.04 6.50 -2.76 -0.02 0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.32 6.63 -51.93 -0.34 -0.03 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.64 6.76 -51.93 -0.35 0.29 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.08 0.56 6.71 -51.93 -0.35 0.22 16 37 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 38 H 0.05 0.63 8.02 -51.93 -0.42 0.21 16 39 H 0.09 1.21 7.61 -51.92 -0.40 0.81 16 40 H 0.41 5.08 7.24 -40.82 -0.30 4.78 16 41 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 42 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.38 1.38 9.11 45.56 0.41 1.79 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.39 7.48 -51.93 -0.39 0.00 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -33.97 378.74 -8.95 -42.92 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.16 Total: 3.37 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 0.26 Total: -5.20 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.72 Total: -42.37 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.32 Total: -16.07 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.97 -8.95 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219219917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.295 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds