Wall clock time and date at job start Tue Mar 31 2020 11:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52993 * 109.47321 * 120.00687 * 2 1 3 5 5 C 1.52999 * 109.47187 * 175.00371 * 4 2 1 6 6 N 1.46898 * 109.47338 * 182.94959 * 5 4 2 7 7 C 1.48816 * 111.18371 * 58.37029 * 6 5 4 8 8 C 1.54934 * 103.34571 * 159.50791 * 7 6 5 9 9 H 1.09004 * 110.72767 * 81.05258 * 8 7 6 10 10 N 1.46510 * 110.72203 * 204.32928 * 8 7 6 11 11 C 1.34770 * 119.99823 * 268.50363 * 10 8 7 12 12 O 1.21281 * 120.00586 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99562 * 180.02562 * 11 10 8 14 14 S 1.81007 * 109.46913 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99802 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99668 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99689 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99552 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00079 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47045 * 89.99826 * 19 17 15 21 21 H 1.48501 * 109.46725 * 209.99593 * 19 17 15 22 22 H 1.48492 * 109.47414 * 329.99659 * 19 17 15 23 23 C 1.54590 * 102.92379 * 322.69101 * 8 7 6 24 24 H 1.08995 * 110.39384 * 140.92081 * 23 8 7 25 25 O 1.42905 * 110.30823 * 263.04230 * 23 8 7 26 26 C 1.47897 * 111.00096 * 175.70621 * 6 5 4 27 27 H 1.09000 * 109.47423 * 299.99551 * 1 2 3 28 28 H 1.09001 * 109.47435 * 59.99691 * 1 2 3 29 29 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46708 * 240.00665 * 2 1 3 31 31 H 1.09004 * 109.47009 * 60.00273 * 3 2 1 32 32 H 1.08997 * 109.47096 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47255 * 300.00418 * 3 2 1 34 34 H 1.08996 * 109.47184 * 54.99653 * 4 2 1 35 35 H 1.09008 * 109.46682 * 294.99856 * 4 2 1 36 36 H 1.09000 * 109.47451 * 62.94694 * 5 4 2 37 37 H 1.09004 * 109.46418 * 302.94521 * 5 4 2 38 38 H 1.09001 * 110.52118 * 41.07462 * 7 6 5 39 39 H 1.09008 * 110.69560 * 278.02379 * 7 6 5 40 40 H 0.96997 * 119.99662 * 88.50601 * 10 8 7 41 41 H 1.09001 * 109.46774 * 299.99516 * 13 11 10 42 42 H 1.08998 * 109.47610 * 59.99831 * 13 11 10 43 43 H 0.96999 * 119.99734 * 180.02562 * 18 17 15 44 44 H 0.96693 * 114.00045 * 177.16820 * 25 23 8 45 45 H 1.09000 * 109.91722 * 94.80749 * 26 6 5 46 46 H 1.09003 * 109.91750 * 333.70476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.8310 1.1878 6 7 4.0487 -1.5853 2.3518 7 6 3.4444 -2.9443 2.4010 8 6 4.4202 -3.7371 3.3065 9 1 4.2182 -3.5377 4.3589 10 7 4.3389 -5.1725 3.0245 11 6 3.4856 -5.9488 3.7213 12 8 2.7853 -5.4593 4.5820 13 6 3.4024 -7.4253 3.4316 14 16 2.1753 -8.1861 4.5232 15 6 2.2816 -9.8601 3.9834 16 1 2.9678 -10.1304 3.1944 17 6 1.4836 -10.8311 4.5722 18 7 1.5634 -12.0817 4.1693 19 14 0.2964 -10.3632 5.9364 20 1 -1.0160 -9.9963 5.3462 21 1 0.1206 -11.5157 6.8563 22 1 0.8407 -9.2060 6.6911 23 6 5.8023 -3.1769 2.8991 24 1 6.4408 -3.0666 3.7755 25 8 6.4223 -4.0356 1.9397 26 6 5.5099 -1.8002 2.2740 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6054 -1.7199 1.2949 35 1 1.7516 -0.1584 2.1369 36 1 4.0016 0.1676 1.1948 37 1 3.8553 -1.3483 0.2733 38 1 3.4046 -3.3812 1.4032 39 1 2.4500 -2.9079 2.8462 40 1 4.8993 -5.5640 2.3364 41 1 3.1072 -7.5757 2.3931 42 1 4.3760 -7.8847 3.6027 43 1 1.0055 -12.7603 4.5805 44 1 7.2736 -3.7122 1.6146 45 1 6.0300 -1.0213 2.8316 46 1 5.8320 -1.7892 1.2327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219219917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:57 Heat of formation + Delta-G solvation = -121.983983 kcal Electronic energy + Delta-G solvation = -24323.146305 eV Core-core repulsion = 20758.266482 eV Total energy + Delta-G solvation = -3564.879824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28252 -39.89335 -37.98853 -36.38070 -35.31251 -34.67424 -32.23223 -30.86061 -29.00935 -28.30717 -27.94371 -27.82500 -24.40015 -22.25864 -22.02855 -21.58451 -20.79200 -19.91786 -18.58697 -17.96511 -17.46327 -17.10926 -16.66885 -16.54134 -16.15821 -15.97741 -15.55626 -15.46160 -15.07027 -14.90370 -14.82736 -14.46122 -14.20389 -13.96713 -13.78002 -13.34902 -13.31212 -13.19189 -13.02187 -12.99786 -12.68321 -12.53589 -12.42825 -12.30626 -12.03844 -11.85830 -11.65088 -11.53102 -11.38470 -11.17467 -11.05233 -11.02741 -10.54863 -10.14784 -9.49240 -9.00239 -8.51878 -6.22827 0.97164 1.31359 1.46103 1.52059 1.54485 2.10077 2.25092 2.68052 2.86179 2.97886 3.13647 3.45751 3.61692 3.85663 3.89832 3.94456 4.04482 4.08014 4.18548 4.21456 4.31521 4.41999 4.45171 4.50149 4.59274 4.62610 4.76610 4.78576 4.83079 4.84802 4.94501 4.98872 5.04007 5.10880 5.12504 5.28483 5.34854 5.44781 5.49593 5.70497 5.75994 5.97961 6.11090 6.47056 6.82031 6.93070 7.19204 8.60599 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.002729 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.465797 B =10259.359481 C =11475.422273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.113 4.113 5 C 0.052 3.948 6 N -0.521 5.521 7 C 0.033 3.967 8 C 0.142 3.858 9 H 0.094 0.906 10 N -0.696 5.696 11 C 0.535 3.465 12 O -0.560 6.560 13 C -0.111 4.111 14 S -0.171 6.171 15 C -0.530 4.530 16 H 0.061 0.939 17 C 0.045 3.955 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.258 1.258 22 H -0.236 1.236 23 C 0.099 3.901 24 H 0.091 0.909 25 O -0.573 6.573 26 C 0.009 3.991 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.420 0.580 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.404 0.596 45 H 0.105 0.895 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 28.583 -9.649 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.151 4.151 5 C -0.075 4.075 6 N -0.245 5.245 7 C -0.096 4.096 8 C 0.036 3.964 9 H 0.112 0.888 10 N -0.350 5.350 11 C 0.321 3.679 12 O -0.438 6.438 13 C -0.261 4.261 14 S 0.055 5.945 15 C -0.677 4.677 16 H 0.080 0.920 17 C -0.161 4.161 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.160 1.160 23 C 0.039 3.961 24 H 0.108 0.892 25 O -0.383 6.383 26 C -0.119 4.119 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.258 0.742 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.257 0.743 45 H 0.123 0.877 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.847 29.178 -7.680 31.176 hybrid contribution 0.992 -1.491 -1.702 2.470 sum 8.839 27.687 -9.382 30.541 Atomic orbital electron populations 1.21845 0.95215 1.01465 1.02114 1.21076 0.95822 0.96973 0.97387 1.21864 1.01341 0.95025 1.01991 1.21648 0.94631 1.00185 0.98587 1.22393 0.95800 0.99041 0.90299 1.64849 1.05072 1.13708 1.40918 1.23508 0.98530 0.89095 0.98470 1.21975 0.94762 0.79488 1.00159 0.88828 1.45488 1.41676 1.07830 1.40041 1.20002 0.79373 0.87770 0.80747 1.90688 1.43932 1.75357 1.33792 1.23250 1.03965 0.94541 1.04390 1.84672 1.53456 1.05306 1.51041 1.22466 1.28016 0.92644 1.24596 0.92028 1.25580 0.97780 0.94000 0.98702 1.70019 1.40558 1.01727 1.43177 0.85854 0.80111 0.80143 0.80189 1.18686 1.18250 1.16021 1.22790 0.92580 0.88575 0.92201 0.89163 1.86319 1.40867 1.50105 1.60996 1.23728 0.89237 0.97374 1.01597 0.92710 0.91853 0.93530 0.91372 0.92719 0.91958 0.92233 0.93482 0.91719 0.88868 0.94554 0.93365 0.91363 0.74196 0.87133 0.86942 0.91346 0.74327 0.87684 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 71.98 0.66 -1.42 16 2 C -0.09 -1.25 2.92 -10.80 -0.03 -1.28 16 3 C -0.15 -1.54 8.95 71.98 0.64 -0.89 16 4 C -0.11 -1.84 4.58 30.59 0.14 -1.70 16 5 C 0.05 0.76 4.53 86.30 0.39 1.15 16 6 N -0.52 -9.05 5.36 -882.23 -4.73 -13.78 16 7 C 0.03 0.75 5.04 86.59 0.44 1.18 16 8 C 0.14 3.29 3.38 46.19 0.16 3.44 16 9 H 0.09 2.56 7.55 -2.38 -0.02 2.54 16 10 N -0.70 -18.44 5.10 -436.83 -2.23 -20.67 16 11 C 0.54 19.29 7.85 87.66 0.69 19.98 16 12 O -0.56 -24.43 15.51 -3.03 -0.05 -24.48 16 13 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 14 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 15 C -0.53 -31.31 10.04 67.95 0.68 -30.63 16 16 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 17 C 0.04 2.66 5.50 84.86 0.47 3.13 16 18 N -0.92 -56.38 13.97 21.65 0.30 -56.08 16 19 Si 0.92 45.52 27.74 68.60 1.90 47.42 16 20 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 23 C 0.10 1.42 4.30 31.47 0.14 1.55 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 O -0.57 -7.25 11.64 -148.98 -1.73 -8.98 16 26 C 0.01 0.11 6.50 86.45 0.56 0.67 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.57 6.63 -2.39 -0.02 0.55 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.94 6.76 -2.39 -0.02 0.92 16 35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 1.10 6.71 -2.39 -0.02 1.08 16 37 H 0.04 0.53 7.97 -2.38 -0.02 0.51 16 38 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 39 H 0.07 1.86 7.61 -2.38 -0.02 1.84 16 40 H 0.42 9.55 7.24 -92.71 -0.67 8.88 16 41 H 0.11 4.03 8.14 -2.40 -0.02 4.02 16 42 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 43 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.40 1.36 9.11 -74.06 -0.67 0.69 16 45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.68 7.48 -2.39 -0.02 0.67 16 Total: -1.00 -73.98 378.74 -2.62 -76.60 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.41 Total: 18.56 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.37 Total: -8.72 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -6.66 Total: -90.53 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.78 Total: -33.46 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -73.98 -2.62 -76.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219219917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.388 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds