Wall clock time and date at job start Tue Mar 31 2020 11:05:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47047 * 2 1
4 4 C 1.52993 * 109.47321 * 120.00687 * 2 1 3
5 5 C 1.52999 * 109.47187 * 175.00371 * 4 2 1
6 6 N 1.46898 * 109.47338 * 182.94959 * 5 4 2
7 7 C 1.48816 * 111.18371 * 58.37029 * 6 5 4
8 8 C 1.54934 * 103.34571 * 159.50791 * 7 6 5
9 9 H 1.09004 * 110.72767 * 81.05258 * 8 7 6
10 10 N 1.46510 * 110.72203 * 204.32928 * 8 7 6
11 11 C 1.34770 * 119.99823 * 268.50363 * 10 8 7
12 12 O 1.21281 * 120.00586 * 359.97438 * 11 10 8
13 13 C 1.50703 * 119.99562 * 180.02562 * 11 10 8
14 14 S 1.81007 * 109.46913 * 180.02562 * 13 11 10
15 15 C 1.76205 * 99.99802 * 179.97438 * 14 13 11
16 16 H 1.08001 * 119.99668 * 359.97438 * 15 14 13
17 17 C 1.38799 * 119.99689 * 179.97438 * 15 14 13
18 18 N 1.31633 * 119.99552 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 120.00079 * 0.02562 * 17 15 14
20 20 H 1.48498 * 109.47045 * 89.99826 * 19 17 15
21 21 H 1.48501 * 109.46725 * 209.99593 * 19 17 15
22 22 H 1.48492 * 109.47414 * 329.99659 * 19 17 15
23 23 C 1.54590 * 102.92379 * 322.69101 * 8 7 6
24 24 H 1.08995 * 110.39384 * 140.92081 * 23 8 7
25 25 O 1.42905 * 110.30823 * 263.04230 * 23 8 7
26 26 C 1.47897 * 111.00096 * 175.70621 * 6 5 4
27 27 H 1.09000 * 109.47423 * 299.99551 * 1 2 3
28 28 H 1.09001 * 109.47435 * 59.99691 * 1 2 3
29 29 H 1.08999 * 109.47281 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.46708 * 240.00665 * 2 1 3
31 31 H 1.09004 * 109.47009 * 60.00273 * 3 2 1
32 32 H 1.08997 * 109.47096 * 180.02562 * 3 2 1
33 33 H 1.09001 * 109.47255 * 300.00418 * 3 2 1
34 34 H 1.08996 * 109.47184 * 54.99653 * 4 2 1
35 35 H 1.09008 * 109.46682 * 294.99856 * 4 2 1
36 36 H 1.09000 * 109.47451 * 62.94694 * 5 4 2
37 37 H 1.09004 * 109.46418 * 302.94521 * 5 4 2
38 38 H 1.09001 * 110.52118 * 41.07462 * 7 6 5
39 39 H 1.09008 * 110.69560 * 278.02379 * 7 6 5
40 40 H 0.96997 * 119.99662 * 88.50601 * 10 8 7
41 41 H 1.09001 * 109.46774 * 299.99516 * 13 11 10
42 42 H 1.08998 * 109.47610 * 59.99831 * 13 11 10
43 43 H 0.96999 * 119.99734 * 180.02562 * 18 17 15
44 44 H 0.96693 * 114.00045 * 177.16820 * 25 23 8
45 45 H 1.09000 * 109.91722 * 94.80749 * 26 6 5
46 46 H 1.09003 * 109.91750 * 333.70476 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.8310 1.1878
6 7 4.0487 -1.5853 2.3518
7 6 3.4444 -2.9443 2.4010
8 6 4.4202 -3.7371 3.3065
9 1 4.2182 -3.5377 4.3589
10 7 4.3389 -5.1725 3.0245
11 6 3.4856 -5.9488 3.7213
12 8 2.7853 -5.4593 4.5820
13 6 3.4024 -7.4253 3.4316
14 16 2.1753 -8.1861 4.5232
15 6 2.2816 -9.8601 3.9834
16 1 2.9678 -10.1304 3.1944
17 6 1.4836 -10.8311 4.5722
18 7 1.5634 -12.0817 4.1693
19 14 0.2964 -10.3632 5.9364
20 1 -1.0160 -9.9963 5.3462
21 1 0.1206 -11.5157 6.8563
22 1 0.8407 -9.2060 6.6911
23 6 5.8023 -3.1769 2.8991
24 1 6.4408 -3.0666 3.7755
25 8 6.4223 -4.0356 1.9397
26 6 5.5099 -1.8002 2.2740
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8932 -0.5137 -0.8901
31 1 1.6766 1.9563 0.8900
32 1 3.1299 1.4425 -0.0005
33 1 1.6766 1.9564 -0.8899
34 1 1.6054 -1.7199 1.2949
35 1 1.7516 -0.1584 2.1369
36 1 4.0016 0.1676 1.1948
37 1 3.8553 -1.3483 0.2733
38 1 3.4046 -3.3812 1.4032
39 1 2.4500 -2.9079 2.8462
40 1 4.8993 -5.5640 2.3364
41 1 3.1072 -7.5757 2.3931
42 1 4.3760 -7.8847 3.6027
43 1 1.0055 -12.7603 4.5805
44 1 7.2736 -3.7122 1.6146
45 1 6.0300 -1.0213 2.8316
46 1 5.8320 -1.7892 1.2327
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001219219917.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:57
Heat of formation + Delta-G solvation = -121.983983 kcal
Electronic energy + Delta-G solvation = -24323.146305 eV
Core-core repulsion = 20758.266482 eV
Total energy + Delta-G solvation = -3564.879824 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.161 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.28252 -39.89335 -37.98853 -36.38070 -35.31251 -34.67424 -32.23223 -30.86061
-29.00935 -28.30717 -27.94371 -27.82500 -24.40015 -22.25864 -22.02855 -21.58451
-20.79200 -19.91786 -18.58697 -17.96511 -17.46327 -17.10926 -16.66885 -16.54134
-16.15821 -15.97741 -15.55626 -15.46160 -15.07027 -14.90370 -14.82736 -14.46122
-14.20389 -13.96713 -13.78002 -13.34902 -13.31212 -13.19189 -13.02187 -12.99786
-12.68321 -12.53589 -12.42825 -12.30626 -12.03844 -11.85830 -11.65088 -11.53102
-11.38470 -11.17467 -11.05233 -11.02741 -10.54863 -10.14784 -9.49240 -9.00239
-8.51878 -6.22827 0.97164 1.31359 1.46103 1.52059 1.54485 2.10077
2.25092 2.68052 2.86179 2.97886 3.13647 3.45751 3.61692 3.85663
3.89832 3.94456 4.04482 4.08014 4.18548 4.21456 4.31521 4.41999
4.45171 4.50149 4.59274 4.62610 4.76610 4.78576 4.83079 4.84802
4.94501 4.98872 5.04007 5.10880 5.12504 5.28483 5.34854 5.44781
5.49593 5.70497 5.75994 5.97961 6.11090 6.47056 6.82031 6.93070
7.19204 8.60599
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.015617 B = 0.002729 C = 0.002439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.465797 B =10259.359481 C =11475.422273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.094 4.094
3 C -0.145 4.145
4 C -0.113 4.113
5 C 0.052 3.948
6 N -0.521 5.521
7 C 0.033 3.967
8 C 0.142 3.858
9 H 0.094 0.906
10 N -0.696 5.696
11 C 0.535 3.465
12 O -0.560 6.560
13 C -0.111 4.111
14 S -0.171 6.171
15 C -0.530 4.530
16 H 0.061 0.939
17 C 0.045 3.955
18 N -0.917 5.917
19 Si 0.915 3.085
20 H -0.262 1.262
21 H -0.258 1.258
22 H -0.236 1.236
23 C 0.099 3.901
24 H 0.091 0.909
25 O -0.573 6.573
26 C 0.009 3.991
27 H 0.054 0.946
28 H 0.062 0.938
29 H 0.046 0.954
30 H 0.068 0.932
31 H 0.054 0.946
32 H 0.061 0.939
33 H 0.059 0.941
34 H 0.046 0.954
35 H 0.064 0.936
36 H 0.093 0.907
37 H 0.036 0.964
38 H 0.048 0.952
39 H 0.068 0.932
40 H 0.420 0.580
41 H 0.110 0.890
42 H 0.112 0.888
43 H 0.277 0.723
44 H 0.404 0.596
45 H 0.105 0.895
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.683 28.583 -9.649 31.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.113 4.113
3 C -0.202 4.202
4 C -0.151 4.151
5 C -0.075 4.075
6 N -0.245 5.245
7 C -0.096 4.096
8 C 0.036 3.964
9 H 0.112 0.888
10 N -0.350 5.350
11 C 0.321 3.679
12 O -0.438 6.438
13 C -0.261 4.261
14 S 0.055 5.945
15 C -0.677 4.677
16 H 0.080 0.920
17 C -0.161 4.161
18 N -0.555 5.555
19 Si 0.737 3.263
20 H -0.187 1.187
21 H -0.183 1.183
22 H -0.160 1.160
23 C 0.039 3.961
24 H 0.108 0.892
25 O -0.383 6.383
26 C -0.119 4.119
27 H 0.073 0.927
28 H 0.081 0.919
29 H 0.065 0.935
30 H 0.086 0.914
31 H 0.073 0.927
32 H 0.080 0.920
33 H 0.078 0.922
34 H 0.065 0.935
35 H 0.083 0.917
36 H 0.111 0.889
37 H 0.054 0.946
38 H 0.066 0.934
39 H 0.086 0.914
40 H 0.258 0.742
41 H 0.129 0.871
42 H 0.131 0.869
43 H 0.087 0.913
44 H 0.257 0.743
45 H 0.123 0.877
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 7.847 29.178 -7.680 31.176
hybrid contribution 0.992 -1.491 -1.702 2.470
sum 8.839 27.687 -9.382 30.541
Atomic orbital electron populations
1.21845 0.95215 1.01465 1.02114 1.21076 0.95822 0.96973 0.97387
1.21864 1.01341 0.95025 1.01991 1.21648 0.94631 1.00185 0.98587
1.22393 0.95800 0.99041 0.90299 1.64849 1.05072 1.13708 1.40918
1.23508 0.98530 0.89095 0.98470 1.21975 0.94762 0.79488 1.00159
0.88828 1.45488 1.41676 1.07830 1.40041 1.20002 0.79373 0.87770
0.80747 1.90688 1.43932 1.75357 1.33792 1.23250 1.03965 0.94541
1.04390 1.84672 1.53456 1.05306 1.51041 1.22466 1.28016 0.92644
1.24596 0.92028 1.25580 0.97780 0.94000 0.98702 1.70019 1.40558
1.01727 1.43177 0.85854 0.80111 0.80143 0.80189 1.18686 1.18250
1.16021 1.22790 0.92580 0.88575 0.92201 0.89163 1.86319 1.40867
1.50105 1.60996 1.23728 0.89237 0.97374 1.01597 0.92710 0.91853
0.93530 0.91372 0.92719 0.91958 0.92233 0.93482 0.91719 0.88868
0.94554 0.93365 0.91363 0.74196 0.87133 0.86942 0.91346 0.74327
0.87684 0.91185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 9.19 71.98 0.66 -1.42 16
2 C -0.09 -1.25 2.92 -10.80 -0.03 -1.28 16
3 C -0.15 -1.54 8.95 71.98 0.64 -0.89 16
4 C -0.11 -1.84 4.58 30.59 0.14 -1.70 16
5 C 0.05 0.76 4.53 86.30 0.39 1.15 16
6 N -0.52 -9.05 5.36 -882.23 -4.73 -13.78 16
7 C 0.03 0.75 5.04 86.59 0.44 1.18 16
8 C 0.14 3.29 3.38 46.19 0.16 3.44 16
9 H 0.09 2.56 7.55 -2.38 -0.02 2.54 16
10 N -0.70 -18.44 5.10 -436.83 -2.23 -20.67 16
11 C 0.54 19.29 7.85 87.66 0.69 19.98 16
12 O -0.56 -24.43 15.51 -3.03 -0.05 -24.48 16
13 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16
14 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16
15 C -0.53 -31.31 10.04 67.95 0.68 -30.63 16
16 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16
17 C 0.04 2.66 5.50 84.86 0.47 3.13 16
18 N -0.92 -56.38 13.97 21.65 0.30 -56.08 16
19 Si 0.92 45.52 27.74 68.60 1.90 47.42 16
20 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16
21 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16
22 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16
23 C 0.10 1.42 4.30 31.47 0.14 1.55 16
24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
25 O -0.57 -7.25 11.64 -148.98 -1.73 -8.98 16
26 C 0.01 0.11 6.50 86.45 0.56 0.67 16
27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16
32 H 0.06 0.57 6.63 -2.39 -0.02 0.55 16
33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.05 0.94 6.76 -2.39 -0.02 0.92 16
35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16
36 H 0.09 1.10 6.71 -2.39 -0.02 1.08 16
37 H 0.04 0.53 7.97 -2.38 -0.02 0.51 16
38 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16
39 H 0.07 1.86 7.61 -2.38 -0.02 1.84 16
40 H 0.42 9.55 7.24 -92.71 -0.67 8.88 16
41 H 0.11 4.03 8.14 -2.40 -0.02 4.02 16
42 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16
43 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16
44 H 0.40 1.36 9.11 -74.06 -0.67 0.69 16
45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
46 H 0.07 0.68 7.48 -2.39 -0.02 0.67 16
Total: -1.00 -73.98 378.74 -2.62 -76.60
By element:
Atomic # 1 Polarization: 18.97 SS G_CDS: -0.41 Total: 18.56 kcal
Atomic # 6 Polarization: -14.09 SS G_CDS: 5.37 Total: -8.72 kcal
Atomic # 7 Polarization: -83.87 SS G_CDS: -6.66 Total: -90.53 kcal
Atomic # 8 Polarization: -31.68 SS G_CDS: -1.78 Total: -33.46 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal
Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal
Total: -73.98 -2.62 -76.60 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001219219917.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.388 kcal
(2) G-P(sol) polarization free energy of solvation -73.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.364 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.984 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds