Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33024 * 1 3 3 C 1.50694 * 120.00004 * 2 1 4 4 C 1.47061 * 119.99710 * 180.02562 * 2 1 3 5 5 O 1.21638 * 120.00561 * 0.27674 * 4 2 1 6 6 N 1.34782 * 119.99861 * 179.97438 * 4 2 1 7 7 C 1.40013 * 120.00204 * 175.05896 * 6 4 2 8 8 C 1.38870 * 120.01578 * 325.56382 * 7 6 4 9 9 C 1.38087 * 119.97983 * 179.72103 * 8 7 6 10 10 C 1.38722 * 120.01927 * 0.55238 * 9 8 7 11 11 O 1.35970 * 119.98647 * 179.69942 * 10 9 8 12 12 C 1.42902 * 117.00354 * 185.73471 * 11 10 9 13 13 H 1.08997 * 110.88502 * 32.41927 * 12 11 10 14 14 C 1.55159 * 111.00425 * 156.30632 * 12 11 10 15 15 C 1.54316 * 102.93994 * 153.57514 * 14 12 11 16 16 N 1.47026 * 107.27507 * 337.80302 * 15 14 12 17 17 C 1.36930 * 125.65049 * 178.95629 * 16 15 14 18 18 H 1.08000 * 120.00195 * 186.71210 * 17 16 15 19 19 C 1.38819 * 120.00042 * 6.72304 * 17 16 15 20 20 N 1.31619 * 119.99877 * 7.53714 * 19 17 16 21 21 Si 1.86801 * 119.99841 * 187.53420 * 19 17 16 22 22 H 1.48501 * 109.46721 * 94.98447 * 21 19 17 23 23 H 1.48500 * 109.47081 * 214.97716 * 21 19 17 24 24 H 1.48496 * 109.47530 * 334.98310 * 21 19 17 25 25 C 1.47429 * 108.69802 * 358.94390 * 16 15 14 26 26 C 1.38727 * 120.03279 * 359.72283 * 10 9 8 27 27 C 1.38082 * 120.01397 * 0.02562 * 26 10 9 28 28 H 1.07990 * 119.99889 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99838 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47542 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47309 * 300.00302 * 3 2 1 32 32 H 1.09005 * 109.47230 * 59.99592 * 3 2 1 33 33 H 0.97006 * 119.99791 * 355.06416 * 6 4 2 34 34 H 1.08002 * 120.00893 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.99161 * 180.29829 * 9 8 7 36 36 H 1.08996 * 110.71554 * 271.93572 * 14 12 11 37 37 H 1.09000 * 110.72184 * 35.03185 * 14 12 11 38 38 H 1.09004 * 109.88696 * 97.22159 * 15 14 12 39 39 H 1.09001 * 109.88574 * 218.38641 * 15 14 12 40 40 H 0.96996 * 120.00051 * 179.97438 * 20 19 17 41 41 H 1.09000 * 110.36298 * 265.28721 * 25 16 15 42 42 H 1.09005 * 110.36381 * 142.96685 * 25 16 15 43 43 H 1.07997 * 119.99350 * 179.97438 * 26 10 9 44 44 H 1.08002 * 120.00484 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3050 0.0000 4 6 2.0655 -1.2736 -0.0006 5 8 1.4573 -2.3271 -0.0061 6 7 3.4133 -1.2737 -0.0011 7 6 4.1134 -2.4817 0.1028 8 6 3.6022 -3.5167 0.8747 9 6 4.2904 -4.7099 0.9721 10 6 5.4978 -4.8708 0.3082 11 8 6.1780 -6.0438 0.4094 12 6 7.4718 -6.0978 -0.1948 13 1 7.9629 -5.1258 -0.1492 14 6 8.3482 -7.1954 0.4646 15 6 9.3315 -7.5757 -0.6622 16 7 8.7087 -7.1853 -1.9355 17 6 9.2682 -7.3341 -3.1764 18 1 8.7774 -6.9175 -4.0436 19 6 10.4662 -8.0205 -3.3198 20 7 10.9886 -8.6545 -2.2914 21 14 11.3369 -8.0445 -4.9723 22 1 12.3584 -6.9673 -5.0092 23 1 11.9979 -9.3603 -5.1645 24 1 10.3466 -7.8249 -6.0569 25 6 7.3817 -6.6073 -1.6549 26 6 6.0120 -3.8353 -0.4585 27 6 5.3224 -2.6434 -0.5610 28 1 -0.5399 0.9352 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1553 1.1060 -0.0005 31 1 1.8204 1.8767 -0.8899 32 1 1.8203 1.8767 0.8900 33 1 3.8983 -0.4367 -0.0734 34 1 2.6646 -3.3899 1.3955 35 1 3.8906 -5.5167 1.5685 36 1 8.8840 -6.7954 1.3254 37 1 7.7399 -8.0520 0.7547 38 1 10.2719 -7.0404 -0.5301 39 1 9.5101 -8.6509 -0.6513 40 1 11.8255 -9.1344 -2.3917 41 1 6.6090 -7.3710 -1.7433 42 1 7.1774 -5.7793 -2.3337 43 1 6.9522 -3.9611 -0.9747 44 1 5.7230 -1.8372 -1.1576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231318367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = 8.250178 kcal Electronic energy + Delta-G solvation = -25358.817504 eV Core-core repulsion = 21664.141106 eV Total energy + Delta-G solvation = -3694.676398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81780 -39.73039 -37.83005 -36.24813 -35.05244 -34.33528 -32.29747 -31.01877 -29.48752 -28.68894 -27.67261 -27.33113 -24.71297 -24.00266 -23.06505 -21.70327 -20.31565 -20.16721 -19.41669 -18.19167 -17.59140 -17.17358 -16.88284 -15.73146 -15.33490 -15.05225 -14.88970 -14.66198 -14.36848 -14.07868 -13.85358 -13.74432 -13.62625 -13.34841 -12.97095 -12.73843 -12.58792 -12.49360 -12.35104 -12.06581 -11.99724 -11.57513 -11.09178 -10.93599 -10.84477 -10.47558 -10.38510 -10.19649 -10.10007 -9.87606 -9.82601 -9.76968 -9.59577 -8.95986 -8.66222 -7.64337 -6.88439 -5.74640 -3.11506 0.86589 1.37545 1.50097 2.79972 2.91646 3.38319 3.42693 3.45539 3.51218 3.83455 4.29573 4.40636 4.47673 4.75041 4.84087 4.96566 5.07421 5.17588 5.21963 5.27527 5.34385 5.38061 5.42149 5.48803 5.55606 5.62791 5.68250 5.83337 5.87246 5.93554 6.03409 6.20341 6.29672 6.35563 6.38703 6.42902 6.44969 6.59463 6.68968 6.91006 7.16212 7.40471 7.60471 7.70646 7.78845 7.87125 8.20914 9.15720 9.76237 10.41210 11.35576 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.002353 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.579400 B =11896.389379 C =12592.523679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.184 4.184 3 C -0.118 4.118 4 C 0.548 3.452 5 O -0.524 6.524 6 N -0.665 5.665 7 C 0.092 3.908 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.133 3.867 11 O -0.304 6.304 12 C 0.064 3.936 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.173 3.827 16 N -0.601 5.601 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.119 3.881 26 C -0.189 4.189 27 C -0.100 4.100 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.408 0.592 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.139 0.861 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 19.742 8.258 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.187 4.187 3 C -0.175 4.175 4 C 0.337 3.663 5 O -0.401 6.401 6 N -0.311 5.311 7 C -0.001 4.001 8 C -0.099 4.099 9 C -0.159 4.159 10 C 0.086 3.914 11 O -0.217 6.217 12 C 0.008 3.992 13 H 0.099 0.901 14 C -0.173 4.173 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.008 4.008 26 C -0.208 4.208 27 C -0.120 4.120 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.245 0.755 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.156 0.844 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.587 18.728 8.265 26.348 hybrid contribution 0.923 0.547 -1.084 1.526 sum -15.664 19.275 7.181 25.854 Atomic orbital electron populations 1.24633 0.94559 1.03556 0.90870 1.21586 0.95876 0.93986 1.07290 1.20841 0.99521 0.93965 1.03151 1.18558 0.81819 0.89751 0.76147 1.90831 1.68013 1.32805 1.48413 1.43401 1.06373 1.08450 1.72909 1.17523 0.94178 0.87671 1.00749 1.20831 0.99806 0.92072 0.97173 1.20315 0.94136 0.98420 1.03062 1.19103 0.92188 0.85616 0.94478 1.86130 1.31110 1.31106 1.73319 1.23862 0.80383 0.99969 0.95030 0.90132 1.23011 0.97561 0.97222 0.99512 1.21255 0.91940 1.00654 0.81329 1.44347 1.13395 1.72082 1.03061 1.19064 1.03547 1.29428 0.83829 0.90328 1.24837 0.98571 0.99178 0.97805 1.69938 1.20767 1.36846 1.29104 0.86071 0.79606 0.77052 0.82872 1.21595 1.21679 1.20549 1.21927 0.90125 0.96518 0.92194 1.21233 1.02562 0.93665 1.03363 1.20647 0.94731 0.97860 0.98774 0.86541 0.86473 0.91975 0.90638 0.90630 0.75457 0.84701 0.84927 0.91459 0.90974 0.94703 0.91501 0.93639 0.95156 0.93937 0.84358 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 13.96 28.92 0.40 -0.21 16 2 C -0.18 -1.34 6.00 -102.86 -0.62 -1.96 16 3 C -0.12 -0.48 10.01 36.00 0.36 -0.12 16 4 C 0.55 5.97 7.48 -12.68 -0.09 5.87 16 5 O -0.52 -7.68 13.98 5.24 0.07 -7.61 16 6 N -0.66 -6.48 5.30 -10.91 -0.06 -6.54 16 7 C 0.09 1.15 6.26 -83.66 -0.52 0.62 16 8 C -0.08 -1.08 8.65 -39.40 -0.34 -1.42 16 9 C -0.14 -2.01 9.98 -39.46 -0.39 -2.40 16 10 C 0.13 2.09 6.68 -39.22 -0.26 1.83 16 11 O -0.30 -5.35 9.95 -19.65 -0.20 -5.55 16 12 C 0.06 1.19 2.81 -24.58 -0.07 1.12 16 13 H 0.08 1.40 6.24 -51.93 -0.32 1.08 16 14 C -0.13 -2.58 6.69 -24.90 -0.17 -2.75 16 15 C 0.17 4.18 5.43 -3.07 -0.02 4.16 16 16 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 17 C -0.23 -6.45 10.26 -15.06 -0.15 -6.60 16 18 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 19 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 20 N -0.92 -26.89 10.49 55.49 0.58 -26.31 16 21 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.12 2.57 6.85 -2.53 -0.02 2.55 16 26 C -0.19 -2.73 8.93 -39.46 -0.35 -3.08 16 27 C -0.10 -1.23 9.96 -39.41 -0.39 -1.62 16 28 H 0.12 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.12 0.88 7.49 -52.49 -0.39 0.48 16 30 H 0.06 0.21 5.85 -51.93 -0.30 -0.10 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.41 2.61 6.56 -40.82 -0.27 2.35 16 34 H 0.14 1.82 6.49 -52.49 -0.34 1.48 16 35 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.03 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.07 1.80 6.97 -51.93 -0.36 1.44 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.88 7.79 -51.93 -0.40 0.48 16 43 H 0.14 2.02 5.63 -52.49 -0.30 1.72 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -33.23 361.36 -8.52 -41.75 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.03 Total: 2.17 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.73 Total: -4.31 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.05 Total: -48.93 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.12 Total: -13.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.23 -8.52 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231318367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.998 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds